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Feature requests #1

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DongzeHE opened this issue Mar 5, 2025 · 0 comments
Open

Feature requests #1

DongzeHE opened this issue Mar 5, 2025 · 0 comments

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@DongzeHE
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DongzeHE commented Mar 5, 2025 •
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Hi @rob-p - Based on my experience working with nf-core scrnaseq, it will be great if we can implement the following features:

  1. using barcodes as obs.index
  2. using gene_id as var.index
  3. adding flag for exporting the anndata object sorted by the index of obs and var. To help CI tests, I suggest to always set this flag in simpleaf.

Thank you very much.
Best,
Dongze
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@DongzeHE