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Two files metadata data/phylogenetic/metadata.csv and acknowledgement data/phylogenetic/GISAID_acknowledgements.csv lack a common column to be linked. But the more serious problem is that the sequence_name of the samples change in GISAID. For example sequence for sample with name Chile/Talca-2/2020 could not easily be found in GISAID anymore. If the linking information was available, we could use Accession ID to find the right sequence.
The text was updated successfully, but these errors were encountered:
Two files metadata
data/phylogenetic/metadata.csv
and acknowledgementdata/phylogenetic/GISAID_acknowledgements.csv
lack a common column to be linked. But the more serious problem is that the sequence_name of the samples change in GISAID. For example sequence for sample with nameChile/Talca-2/2020
could not easily be found in GISAID anymore. If the linking information was available, we could use Accession ID to find the right sequence.The text was updated successfully, but these errors were encountered: