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.gitlab-ci.yml
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.gitlab-ci.yml
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include:
- project: hpc/gitlab-pipelines
file:
- github-project-pipelines.gitlab-ci.yml
- spack-build-ctest.gitlab-ci.yml
- project: hpc/gitlab-upload-logs
file: enable-upload.yml
default:
tags: [bb5_map]
# setup phase
spack_setup:
extends: .spack_setup_ccache
# build phase
spack_build:
extends: .spack_build
variables:
SPACK_PACKAGE_SPEC: +codechecks build_type=RelWithDebInfoAndAssert
spack variants 1/4:
extends: "spack_build"
variables:
SPACK_PACKAGE_SPEC: +distmesh~petsc
spack variants 2/4:
extends: "spack_build"
variables:
SPACK_PACKAGE_SPEC: ~distmesh~petsc
spack variants 3/4:
extends: "spack_build"
variables:
SPACK_PACKAGE_SPEC: ^petsc+complex~hypre
spack variants 4/4:
extends: "spack_build"
variables:
SPACK_PACKAGE_SPEC: ^petsc+complex~hypre
SPACK_PACKAGE_DEPENDENCIES: ^sundials@:2
perf_mon_spack_build:
extends: .spack_build
variables:
SPACK_PACKAGE_SPEC: +caliper build_type=RelWithDebInfoAndAssert
# test phase
steps4_simple_model:
needs: ["spack_build"]
extends: .spack_test
ctest:
needs: ["spack_build"]
variables:
GIT_SUBMODULE_STRATEGY: normal
SPACK_EXTRA_MODULES: llvm
SPACK_PACKAGE: steps
arm64_macOS_brew:
tags: [macos-arm64]
stage: build
script:
- python3 -m virtualenv venv
- venv/bin/pip install --upgrade pip -r requirements.txt
- source venv/bin/activate
- mkdir build && cd build
- >
cmake_args=(-DCMAKE_BUILD_TYPE=RelWithDebInfoAndAssert
-DCMAKE_INSTALL_PREFIX=$PWD/../install
-DBUILD_TESTING:BOOL=False
-DPython_EXECUTABLE=$PWD/../venv/bin/python3
-DSTEPS_USE_DIST_MESH:BOOL=TRUE
-DUSE_MPI=True
-DUSE_PETSC=True)
- cmake .. ${cmake_args[@]}
- cmake --build . --parallel
- ctest --output-on-failure
- cmake --build . --target install
arm64_macOS_miniconda:
tags: [macos-arm64]
stage: build
script:
- export PATH=$HOME/miniconda3/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
- export CMAKE_PREFIX_PATH=$HOME/miniconda3
- export MPICH_FC=$HOME/miniconda3/bin/gfortran
- export MPICH_CC=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
- export MPICH_CXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
- export CC=mpicc
- export CXX=mpicxx
- mkdir build && cd build
- >
cmake_args=(-DCMAKE_BUILD_TYPE=RelWithDebInfoAndAssert
-DBUILD_TESTING:BOOL=False
-DSTEPS_INSTALL_PYTHON_DEPS:BOOL=False
-DCMAKE_INSTALL_PREFIX=$PWD/../install
-DSTEPS_USE_STEPSBLENDER:BOOL=False
-DSTEPS_USE_DIST_MESH:BOOL=TRUE
-DPython_EXECUTABLE=$HOME/miniconda3/bin/python
-DUSE_MPI=True
-DUSE_PETSC=True)
- cmake .. ${cmake_args[@]}
- cmake --build . --parallel
- ctest --output-on-failure
- cmake --build . --target install
# deactivated Docker container builds
.basic_ci:
variables:
GIT_STRATEGY: fetch
KUBERNETES_CPU_LIMIT: 4500m # Add a bit more for 4 build process + management overhead
KUBERNETES_CPU_REQUEST: 4
KUBERNETES_MEMORY_LIMIT: 8Gi
KUBERNETES_MEMORY_REQUEST: 8Gi
BUILD_DIR: _build_ubuntu
tags: [kubernetes]
stage: build
before_script:
- free -m | grep -v "Swap" # RAM
- df -h| grep -E "Filesystem|overlay" # storage
- lscpu | grep -E "^CPU\(s\)" # CPUs
- rm -rf _build_ubuntu
.ubuntu/20.04:
extends: [.basic_ci]
only:
- external_pull_requests
except:
- schedules
image:
name: cnsoist/steps:gitlab-20211022
script:
- cmake -B $BUILD_DIR -S . -DUSE_BUNDLE_SUNDIALS:BOOL=FALSE
- cmake --build $BUILD_DIR -v -j$KUBERNETES_CPU_REQUEST
- cd $BUILD_DIR
- ctest --verbose
.ubuntu/18.04:
extends: [.basic_ci]
only:
- external_pull_requests
except:
- schedules
image:
name: cnsoist/steps:gitlab-1804-20210705
script:
- cmake -B $BUILD_DIR -S . -DUSE_BUNDLE_SUNDIALS:BOOL=FALSE
- cmake --build $BUILD_DIR -v -j$KUBERNETES_CPU_REQUEST
.bundle-ubuntu/20.04:
extends: [.basic_ci]
image:
name: cnsoist/steps:gitlab
only:
- master
- schedules
script:
- apt-get update
- apt-get install -y libboost-dev libboost-chrono-dev libboost-system-dev libboost-timer-dev
- cmake -B $BUILD_DIR -S . -DUSE_BUNDLE_SUNDIALS=ON -DUSE_BUNDLE_OMEGA_H=ON
- cmake --build $BUILD_DIR -v -j$KUBERNETES_CPU_REQUEST
- cd $BUILD_DIR
- ctest --verbose
.bundle-ubuntu/18.04:
extends: [.basic_ci]
image:
name: cnsoist/steps:gitlab-18.04
only:
- master
- schedules
script:
- apt-get update
- apt-get install -y libboost-dev libboost-chrono-dev libboost-system-dev libboost-timer-dev
- cmake -B $BUILD_DIR -S . -DUSE_BUNDLE_SUNDIALS=ON -DUSE_BUNDLE_OMEGA_H=ON
- cmake --build $BUILD_DIR -v -j$KUBERNETES_CPU_REQUEST
- cd $BUILD_DIR
- ctest --verbose -E parallel-python # 18.04 docker image has issues with mpi
# Automated Performance Monitoring (perf_mon)
.perf_mon_kernel:
stage: test
needs: ["perf_mon_spack_build"]
when: manual
timeout: 72 hours
variables:
bb5_memory: 1G
bb5_ntasks: 1
bb5_cpus_per_task: 1
bb5_constraint: cpu
bb5_qos: longjob
bb5_duration: "72:00:00"
script:
- . ${SPACK_ROOT}/share/spack/setup-env.sh
- spack load /${SPACK_INSTALLED_HASH}
- .ci/automated_performance_monitoring.sh
perf_mon 1/3:
extends: .perf_mon_kernel
variables:
PERF_MON_MODEL_NAME: SimpleModel
compare_with: perfRes_STEPS4.0Paper
# nc stands for number of cores
# spawned jobs use this amount of cores (evenly distributed across used nodes)
nc: 32 512 2048
perf_mon 2/3:
extends: .perf_mon_kernel
variables:
PERF_MON_MODEL_NAME: CaBurstBackground
mesh: CaBurstUnifiedMesh
compare_with: perfRes_STEPS4.0Paper
nc: 32 512 4096
perf_mon 3/3:
extends: .perf_mon_kernel
variables:
PERF_MON_MODEL_NAME: CaBurstFullModel
mesh: CaBurstUnifiedMesh
compare_with: perfRes_STEPS4.0Paper
nc: 32 512 4096
# Automated Validation Monitoring (val_mon)
.val_mon_kernel:
stage: test
needs: ["spack_build"]
timeout: 24 hours
tags: [bb5_map]
variables:
bb5_memory: 1G
bb5_ntasks: 1
bb5_cpus_per_task: 1
bb5_constraint: cpu
bb5_qos: longjob
bb5_duration: "24:00:00"
script:
# Load the Spack installation that knows about the package to be tested.
- . ${SPACK_ROOT}/share/spack/setup-env.sh
- spack load /${SPACK_INSTALLED_HASH}
- .ci/automated_validation_monitoring.sh
val_mon_rallpack1:
extends: .val_mon_kernel
when: manual
variables:
model_name: rallpack1
slurm_job_name: rallpack1_val_mon_CI
simulation_dir: rallpack1
compare_with: ref_PR_1000_2971c406/raw_traces/STEPS3
steps_version: 4
val_mon_rallpack3:
extends: .val_mon_kernel
when: manual
variables:
bb5_memory: 2G
model_name: rallpack3
slurm_job_name: rallpack3_val_mon_CI
simulation_dir: rallpack3
compare_with: ref_PR_1000_2971c406/raw_traces/STEPS3
steps_version: 4
val_mon_caburst:
extends: .val_mon_kernel
when: manual
variables:
model_name: caburst
slurm_job_name: caburst_val_mon_CI
simulation_dir: caBurst/full/validations
compare_with: ref_PR_1000_2971c406/raw_traces/STEPS3
steps_version: 4
# kill the spawned slurm jobs
# This job kills all the submitted jobs with the names below (only the ones submitted by the CI).
# Therefore, it could potentially kill the perf_mon from other PRs/MRs.
# It is a hard RESET of perf_mon in case of troubles in BB5.
scancel_perf_mon:
stage: test
when: manual
script:
- for nc in 2 4 8 16 32 64 128 256 512 1024 2048 4096 8192; do scancel --jobname=CI_perf_mon_strong_scaling_$nc; done
- for nc in 2 4 8 16 32 64 128 256 512 1024 2048 4096 8192; do scancel --jobname=CI_perf_mon_caliper_$nc; done
scancel_val_mon_rallpack1:
stage: test
when: manual
script:
- scancel --jobname=rallpack1_val_mon_CI
scancel_val_mon_rallpack3:
stage: test
when: manual
script:
- scancel --jobname=rallpack3_val_mon_CI
scancel_val_mon_caburst:
stage: test
when: manual
script:
- scancel --jobname=caburst_val_mon_CI