thesis.tex

\documentclass{uscthesis}

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%%% Options include: [forbinding], which produces 
%%% an alternative title page and an appropriate
%%% binding margin,  [honors] for Honors College theses,
%%% and [durt] for undergraduate thesis submitted as part
%%% part of the distinction in mathematics program.
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%%  LaTeX Preamble
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\usepackage{graphicx}
\usepackage[left=1.25in, right=1.25in, top=1in, bottom=1in]{geometry}
\usepackage{amsmath,amsfonts,amssymb}
\usepackage[version=3]{mhchem} % Formula subscripts using \ce{}
\usepackage{tikz}
\usepackage{upgreek}
\usepackage{lscape}
\usepackage{lineno}
% \usepackage{caption}
\usepackage[position=t,singlelinecheck=off]{subfig}
\usepackage{cleveref}
\usepackage
[disable]
{todonotes}
\usepackage{siunitx}
\usepackage{pdflscape}


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%% You should include above
%% any LaTeX packages that you need.  Most packages should work 
%% with this documentclass.
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\bibliographystyle{amsplain}

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%% The lines above specify a BibTeX style which controls 
%% the appearance of the bibliography and how citations to
%% the bibliography within the text will work.  It is based on the biblatex.sty
%% package and provides a Chicago style, as preferred by the Graduate School.
%% There are other acceptable styles.  Indeed, different academic disciplines
%% have different styles.
%% 
%% The line  \bibliography{references} will cause LaTeX is search for a file
%% called thesis.bib.  This file could be named differently.  For example
%% \bibliography{henry} would provoke a search for henry.bib.  The
%% file reference.bib (or henry.bib) is one you will have to produce.  It is
%% a BibTeX database of references you use.
%% 
%% There are a number of alternate ways to address your bibliographic needs.
%% See the documentation uscthesisdoc.pdf  for a discussion of the different options.
%%	
%%
%% 
%%In any case, this  is a good spot to ask LaTeX to load what it needs to handle
%% literature citations and to layout the bibliography. 
%%
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\newtheorem{thm}{Theorem}[chapter]
\newtheorem*{thmun}{Theorem}
\newtheorem{cor}[thm]{Corollary}
\newtheorem{lem}[thm]{Lemma}
\theoremstyle{definition}
\newtheorem{defn}[thm]{Definition}
\newtheorem{ex}[thm]{Example}
\theoremstyle{plain}

\tikzset{>=stealth}
\usetikzlibrary{positioning}

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%%  These are just a few sample lines. Put here any 
%%  commands of your own devising that you want to use.
%%  If these examples are no use to you, omit them.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\newcommand{\grad}[1]{\vec{\nabla} #1} % for gradient
\newcommand{\iA}{\AA$^{-1}$}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%             The Front Matter
%%  The section below deals with the material that comes 
%%  before the actual content of the document: The title 
%%  page, abstract, acknowledgments,etc.
%%
%%  Some of it is required.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\title{Solving Atomic Structures using Statistical Mechanical Searches on X-ray Scattering Derived Potential Energy Surfaces}

\author{Christopher James}{Wright}    %% First Name then 
                                 %% Last Name

\date{2016}                      %% The year of graduation

\otherdegrees{
Bachelor of Science\\
Brown University 2014\\ [\baselineskip]
%% The \\ on this line is 
}                                %% ESSENTIAL!

\degree{Master of Science}     %% The Graduate School provides 
                                 %% a list of official degrees.
\field{Chemical Engineering}              %% Fields also provided by the 
                                 %% Graduate School.
\college{College of Engineering and Computing}  %%As listed by Grad School

\advisor {Dr.}{Xiao-Dong Zhou}{Director of Thesis}  %%% Be sure the 
\readera{Dr.}{Mark Uline}{Reader}          %%% the one used in 
\readerb{Dr.}{Jochen Lauterbach}{Reader} %%% your department.
\readerc{Dr.}{John Weidner}{Reader}     %%% third field is %%% If you have just two readers, for example, leave out \readerc and
%%% \readerd
%%%
%%% For Honors College theses use \reader{}{}   NO third field.
%%% The commands \otherdegrees, \degree, \field, \college, \readera, etc.
%%% are not used under the honors option.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\dean{Lacy Ford}   %% The Dean of the Graduate School
                   %% BE SURE TO CHECK THE NAME OF THE
                   %%PERSON CURRENTLY HOLDING THIS POSITION
                     %% For Honors College theses use
                     %% \schcsigner{}{}.  For example,
                     %% \schcsigner{Dr.}{Davis Baird}

\copyrightpage       %% This is optional. It makes a 
                     %% copyright page that will appear 
                     %% immediately after the title page.

\abstract{misc/abstract}  %% This calls the file herkimer.tex but
                     %% but you might replace herkimer by 
                     %% anything you like, for example by 
                     %% abstract. Note, the Graduate School
                     %% REQUIRES that PhD dissertations have 
                     %% abstracts.
                     %%
                     %% For Honors College theses use
                     %% \honorsabstract{}


\acknowledgments{misc/thanks} %% This calls the file thanks.tex 
%% This is optional       %% where you have put your 
                          %%acknowledgments.

\dedication{misc/dedication}   %% Calls dedication.tex
%%% Also optional

% \preface{forward}    %% Calls forward.tex.  Optional.

% \makeLoT              %% Issue this command if your work has 
                       %% four or more tables.  A list of tables 
                       %% will be produced automatically.

\makeLoF               %% works the same way but for figures.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%  Finally, here is the meat.  The idea is to compose a 
%%  .tex file for each section of your thesis or dissertation.  
%%  Then use LaTeX's \include command to put them all together.  
%%  Doing it this way makes it easier to change the order of 
%%  exposition as your writing is in progress.  Also it
%%  makes it easy to print out just one section. The \include
%%  command always starts a new page. So every section would 
%%  start on a new page.  If you would like for sections just
%%  to continue, after the appropriate vertical space, on the
%%  current page, then use the \input command instead of the 
%%  \include command.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{document}
% \linenumbers
% \todototoc
% \listoftodos
\include{intro/introduction}    %% Calls Introduction.tex
                          %% Honors theses are required to 
                          %% have an Introduction.  For
                          %% Honors theses, the file 
                          %% Introduction.tex should begin
                          %%
                          %% \chapter*{Introduction}
                          %% followed by the text of the 
                          %% introduction.


\include{pes_e/pes_e}

\include{pdf/pdf}

\include{bmk/bmk}

\include{dp/dp}

% \include{au_2nm/au_2nm}

\include{pno/pno}

\include{conc/conc}     %% Honors theses are required to 
                          %% have an unnumbered chapter
                          %% for conclusions.  The file
                          %% Conclusion.tex should begin
                          %%   
                          %% \chapter*{Conclusion}
                          %% followed by the appropriate
                          %% text.
\include{biblio}
% \printbibliography         %%  This is the command to use to
              			       %%  insert the bibliography if you are using
                           %% the biblatex.sty package.  See the 
                           %% uscthesisdoc.pdf documentation for
                           %% for alternative bibliographic systems.     

% \Appendix                 %% Use this command if you have one 
\Appendices                          %% appendix. Use \Appendices if you 
                          %% have more than one.
	
% \input{toolong}         %% Calls toolong.tex which contains
\input{pno/pno_appendix}  %% an appendix. After issuing the 
                        %% command \Appendix or \Appendices
                        %% you must use \input not \include
                        %% to load the first appendix.

\end{document}
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