NaN fix (Bar, Box, Dotplot)

CHKim5 · Jul 29, 2021 · 71de983 · 71de983
1 parent 051b537
commit 71de983
Show file tree

Hide file tree

Showing 4 changed files with 52 additions and 4 deletions.
diff --git a/R/AS_barplot.R b/R/AS_barplot.R
@@ -54,7 +54,22 @@ AS_barplot<-function(data,
     else if (asterisk =="Dunn"){
       p_val_data<-data[["Dunn"]]}
     else {
-      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}}
+      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}
+    if(length(unique(data[["Data"]]$Group)) !=2){
+      for(a in 1:nrow(p_val_data)){
+        for(b in 1:ncol(p_val_data)){
+          if(is.nan(p_val_data[a,b])==T){
+            p_val_data[a,b]<-1
+          }
+        }
+      }}
+    else if (length(unique(data[["Data"]]$Group))==2){
+      for(b in 1:length(p_val_data)){
+        if(is.nan(p_val_data[b])==T){
+          p_val_data[b]<-1
+        }
+      }
+    }}
   ###Plots###
   suppressWarnings(
     if (length(unique(data[["Data_renamed"]][["ZZZZ"]]))!=2){

diff --git a/R/AS_boxplot.R b/R/AS_boxplot.R
@@ -54,7 +54,23 @@ AS_boxplot<-function(data,
     else if (asterisk =="Dunn"){
       p_val_data<-data[["Dunn"]]}
     else {
-      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}}
+      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}
+    if(length(unique(data[["Data"]]$Group)) !=2){
+      for(a in 1:nrow(p_val_data)){
+        for(b in 1:ncol(p_val_data)){
+          if(is.nan(p_val_data[a,b])==T){
+            p_val_data[a,b]<-1
+          }
+        }
+      }}
+    else if (length(unique(data[["Data"]]$Group))==2){
+      for(b in 1:length(p_val_data)){
+        if(is.nan(p_val_data[b])==T){
+          p_val_data[b]<-1
+        }
+      }
+    }
+    }
   ###Plots###
   suppressWarnings(
     if (length(unique(data[["Data_renamed"]][["Group"]]))!=2) {

diff --git a/R/AS_dotplot.R b/R/AS_dotplot.R
@@ -54,7 +54,23 @@ AS_dotplot<-function(data,
     else if (asterisk =="Dunn"){
       p_val_data<-data[["Dunn"]]}
     else {
-      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}}
+      print("Wrong asterisk input must be one of (Dunn,Scheffe,u_test,t_test)")}
+    if(length(unique(data[["Data"]]$Group)) !=2){
+    for(a in 1:nrow(p_val_data)){
+      for(b in 1:ncol(p_val_data)){
+        if(is.nan(p_val_data[a,b])==T){
+          p_val_data[a,b]<-1
+        }
+      }
+    }}
+    else if (length(unique(data[["Data"]]$Group))==2){
+      for(b in 1:length(p_val_data)){
+        if(is.nan(p_val_data[b])==T){
+          p_val_data[b]<-1
+        }
+      }
+    }
+    }
   ###Plots###
   suppressWarnings(
     if (length(unique(data[["Data_renamed"]][["Group"]]))!=2) {

diff --git a/man/NEWS.Rd b/man/NEWS.Rd
@@ -1,5 +1,6 @@
 \name{NEWS}
-\title{News for Package \pkg{LMSstat}}
+\alias{NEWS}
+\title{News for Package
 
 \section{Changes in version 1.0.1,(February 2021)}{
   \itemize{