tests.yml

name: Python package

on: [push, pull_request, workflow_dispatch]

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"]
        os: [ubuntu-latest]

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install flake8 pytest pep8 pyyaml
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
      - name: Install
        run: |
          python setup.py install
      - name: Test with PyTest
        run: |
          pytest -v tests/test_umi_tools.py