From 8690fdbd162b65abb6bed6c70a9174a774c1025a Mon Sep 17 00:00:00 2001
From: Dakota Howard <58985143+dthoward96@users.noreply.github.com>
Date: Thu, 18 Apr 2024 11:56:29 -0400
Subject: [PATCH] bug fix fasta file creation

Fix issue where it requires fasta file for non-fasta submission
---
 seqsender.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/seqsender.py b/seqsender.py
index 4de2c43..081b872 100755
--- a/seqsender.py
+++ b/seqsender.py
@@ -82,7 +82,8 @@ def start(command, database, organism, submission_dir, submission_name, config_f
 	config_dict = process.get_config(config_file=config_file, database=database)
 	# Check metadata file
 	metadata = process.get_metadata(database=database, organism=organism, metadata_file=metadata_file)
-	metadata = process.process_fasta_samples(metadata = metadata, fasta_file = fasta_file)
+	if fasta_file is not None:
+		metadata = process.process_fasta_samples(metadata = metadata, fasta_file = fasta_file)
 	# Create identifier for each database to store submitting samples in submission status worksheet
 	identifier_columns = dict()
 	# Prepping submission files for each given database