From b41e2ff47d4335abd1c3e765b713159a18472cff Mon Sep 17 00:00:00 2001 From: Fernando Meyer Date: Mon, 3 Dec 2018 11:46:52 +0100 Subject: [PATCH] update version to 1.0.0 --- EXAMPLES.md | 7 ++++++- version.py | 2 +- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/EXAMPLES.md b/EXAMPLES.md index fab5d4a..22651b1 100644 --- a/EXAMPLES.md +++ b/EXAMPLES.md @@ -40,7 +40,12 @@ docker pull stefanjanssen/docker_profiling_tools:tipp docker pull stefanjanssen/docker_profiling_tools:motu ~~~ -- CommonKmers uses a database that is not stored inside its Biobox. Download it from and extract the files. Make sure to set the path to the files with option `--volume` for `opal_workflow.py`, as shown below. +- CommonKmers uses a database that is not stored inside its Biobox. Download it from (DOI: ) and extract the files. Make sure to set the path to the files with option `--volume` for `opal_workflow.py`, as shown below. + +~~~BASH +wget --content-disposition https://zenodo.org/record/1749272/files/CommonKmersData.tar.gz?download=1 +tar -xzf CommonKmersData.tar.gz +~~~ - OPAL's tool to run Bioboxes of profilers, measure their run time and maximum memory usage, and automatically assess their results is `opal_workflow.py`. To run it, you also need the gold standard file [gs_cami_i_hc.profile](data/gs_cami_i_hc.profile) and the Biobox YAML file [biobox_cami_i_hc.yaml](data/biobox_cami_i_hc.yaml). diff --git a/version.py b/version.py index 02f8497..1f356cc 100644 --- a/version.py +++ b/version.py @@ -1 +1 @@ -__version__ = '0.6.4' +__version__ = '1.0.0'