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biobox_cami_ii_mg.yaml
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version: 1.0.0
arguments:
reads:
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_0/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_1/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_2/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_3/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_4/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_5/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_6/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_7/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_8/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_9/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_10/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_11/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_12/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_13/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_14/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_15/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_16/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_17/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_18/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_19/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_20/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_21/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_22/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_23/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_24/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_25/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_26/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_27/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_28/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_29/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_30/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_31/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_32/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_33/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_34/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_35/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_36/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_37/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_38/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_39/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_40/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_41/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_42/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_43/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_44/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_45/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_46/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_47/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_48/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_49/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_50/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_51/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_52/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_53/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_54/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_55/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_56/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_57/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_58/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_59/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_60/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_61/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_62/reads/anonymous_reads.fq.gz
- format: bioboxes.org:/fastq
path: /bbx/mnt/input/2017.12.29_11.37.26_sample_63/reads/anonymous_reads.fq.gz
databases:
taxonomy:
path: ${PREFIX}/share/taxonomy/
format: bioboxes.org:/taxonomy_ncbi_dumps
commonkmers:
path: /exchange/db/
format: unknown
#download from https://zenodo.org/record/1749272/files/CommonKmersData.tar.gz?download=1
#Contents should look like
# Bcalms
# CommonKmerMatrix-30mers.h5
# CommonKmerMatrix-50mers.h5
# FileNames.txt
# Info.txt
# Taxonomy.txt
cache: /cache