diff --git a/R/intSiteRetriever.R b/R/intSiteRetriever.R index 72053bc..b232ef9 100644 --- a/R/intSiteRetriever.R +++ b/R/intSiteRetriever.R @@ -162,12 +162,6 @@ getMRCs <- function(sample_ref, conn, numberOfMRCs=3) { ref_genome <- sites.metadata$refGenome[1] # all the same mrcs <- get_N_MRCs(sites_meta, get_reference_genome(ref_genome), numberOfMRCs) - - #keep output consistant across functions - mrcs$siteID <- as.numeric(mrcs$siteID) - mrcs$position <- as.numeric(mrcs$position) - mrcs$strand <- as.character(mrcs$strand) - mrcs$chr <- as.character(mrcs$chr) merge(mrcs, sites.metadata[c("siteID", "sampleName", "refGenome")]) } diff --git a/R/random_site.R b/R/random_site.R index 0b31751..5058af4 100644 --- a/R/random_site.R +++ b/R/random_site.R @@ -62,8 +62,8 @@ get_random_positions <- function(siteIDs, reference_genome, gender, data_frame( "siteID" = rep(x,number_of_positions), "chr" = as.character(cuts), - "strand"=as.character(cut(sign(rands), breaks=c(-1,0,1), labels=c("-", "+"), include.lowest=T)), - "position"=abs(rands) - cs[match(cuts, names(chr_len))]) + "strand" = as.character(cut(sign(rands), breaks=c(-1,0,1), labels=c("-", "+"), include.lowest=T)), + "position" = abs(rands) - cs[match(cuts, names(chr_len))]) }) .Random.seed <- seed #resetting the seed