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Replace actual quality trimming. #73

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cnobles opened this issue Feb 26, 2018 · 0 comments

cnobles commented Feb 26, 2018

Code should be changed back to looking at the quality scores rather than successive 'N' calls.

Quality trimming occurs around line 326 of intSiteLogic.R. Previous code which looked at quality scores was commented out.

This can cause problems if the low quality bases are not called as 'N'.

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