03-d-mvit.md

3d. Manacus vitellinus

Data retrieval

# Manacus is not currently part of the default fidibus references. 
# We include the configuration file in yamldir/
fidibus --workdir=data/ \
        --refr=Mvit \
        -c=yamldir/
        download prep iloci breakdown stats

Summary

genhub-ilocus-summary.py --workdir=data/ --outfmt=tex Mvit
genhub-pilocus-summary.py --workdir=data/ --outfmt=tex Mvit
genhub-milocus-summary.py --workdir=data/ --outfmt=tex Mvit

Compactness

genhub-compact.py --workdir=data/ --length=1000000 \
                  --iqnt=0.95 --gqnt=0.05 Mvit Hsap Mmus \
    > phisigma-mvit.tsv

Figures

See 03-d-mvit.ipynb for visualizations of these data.