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Add new genomes #1

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3 of 7 tasks
standage opened this issue Jan 29, 2015 · 1 comment
Open
3 of 7 tasks

Add new genomes #1

standage opened this issue Jan 29, 2015 · 1 comment

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@standage
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  • Acromyrmex echinatior
  • Acyrthosiphon pisum
  • Atta cephalotes
  • Linepithema humile
  • Pogonomyrmex barbatus
  • Apis mellifera (HymenopteraBase)
  • Drosophila melanogaster (FlyBase)
@standage
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standage commented May 7, 2015

There are currently 2 genomes in HymHub from HymenopteraBase: Camponotus floridanus and Solenopsis invicta. The quality margin between these annotations and those at NCBI is substantial. Part of it is the fact that the assemblies are so fragmented, and it doesn't look like NCBI has done any re-assembly.

Most, if not all, of the genomes listed above were not available from NCBI when this issue was created, but now are. We should definitely integrate OGS 3.2 simply due to its wide usage, but for the others the HymenopteraBase annotations will definitely be a secondary priority.

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