From f58e43d2d06a465b833511169c47b810bebf6514 Mon Sep 17 00:00:00 2001
From: Alexander Sandercock <39815775+alex-sandercock@users.noreply.github.com>
Date: Wed, 28 Aug 2024 16:29:17 -0400
Subject: [PATCH] fixed chrom order bug

---
 R/mod_diversity.R | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/R/mod_diversity.R b/R/mod_diversity.R
index 821e686..1f5493f 100644
--- a/R/mod_diversity.R
+++ b/R/mod_diversity.R
@@ -300,7 +300,12 @@ mod_diversity_server <- function(id){
       )
       #Order the Chr column
       diversity_items$pos_df$POS <- as.numeric(diversity_items$pos_df$POS)
-      # Sort the dataframe
+      # Sort the dataframe and pad with a 0 if only a single digit is provided
+      diversity_items$pos_df$CHROM <- ifelse(
+        nchar(diversity_items$pos_df$CHROM) == 1, 
+        paste0("0", diversity_items$pos_df$CHROM), 
+        diversity_items$pos_df$CHROM
+      )
       diversity_items$pos_df <- diversity_items$pos_df[order(diversity_items$pos_df$CHROM), ]
 
       #Plot