diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle index 77a02e231..37bc6e940 100644 Binary files a/.doctrees/environment.pickle and b/.doctrees/environment.pickle differ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb index c091adbad..adf3a1faf 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-kinetic-schemes.ipynb @@ -152,10 +152,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:29.987603Z", - "iopub.status.busy": "2024-09-19T15:20:29.987422Z", - "iopub.status.idle": "2024-09-19T15:20:30.777328Z", - "shell.execute_reply": "2024-09-19T15:20:30.776518Z" + "iopub.execute_input": "2024-09-20T08:04:50.228513Z", + "iopub.status.busy": "2024-09-20T08:04:50.228319Z", + "iopub.status.idle": "2024-09-20T08:04:51.032068Z", + "shell.execute_reply": "2024-09-20T08:04:51.031238Z" } }, "outputs": [], @@ -169,10 +169,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.780091Z", - "iopub.status.busy": "2024-09-19T15:20:30.779554Z", - "iopub.status.idle": "2024-09-19T15:20:30.810370Z", - "shell.execute_reply": "2024-09-19T15:20:30.809723Z" + "iopub.execute_input": "2024-09-20T08:04:51.034649Z", + "iopub.status.busy": "2024-09-20T08:04:51.034225Z", + "iopub.status.idle": "2024-09-20T08:04:51.064085Z", + "shell.execute_reply": "2024-09-20T08:04:51.063451Z" } }, "outputs": [], @@ -277,10 +277,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.812603Z", - "iopub.status.busy": "2024-09-19T15:20:30.812203Z", - "iopub.status.idle": "2024-09-19T15:20:30.817199Z", - "shell.execute_reply": "2024-09-19T15:20:30.816528Z" + "iopub.execute_input": "2024-09-20T08:04:51.066221Z", + "iopub.status.busy": "2024-09-20T08:04:51.066015Z", + "iopub.status.idle": "2024-09-20T08:04:51.071080Z", + "shell.execute_reply": "2024-09-20T08:04:51.070411Z" } }, "outputs": [ @@ -323,10 +323,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.847099Z", - "iopub.status.busy": "2024-09-19T15:20:30.846662Z", - "iopub.status.idle": "2024-09-19T15:20:30.850681Z", - "shell.execute_reply": "2024-09-19T15:20:30.850079Z" + "iopub.execute_input": "2024-09-20T08:04:51.100578Z", + "iopub.status.busy": "2024-09-20T08:04:51.100310Z", + "iopub.status.idle": "2024-09-20T08:04:51.104566Z", + "shell.execute_reply": "2024-09-20T08:04:51.103971Z" } }, "outputs": [ @@ -367,10 +367,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.852610Z", - "iopub.status.busy": "2024-09-19T15:20:30.852323Z", - "iopub.status.idle": "2024-09-19T15:20:30.855815Z", - "shell.execute_reply": "2024-09-19T15:20:30.855254Z" + "iopub.execute_input": "2024-09-20T08:04:51.106679Z", + "iopub.status.busy": "2024-09-20T08:04:51.106190Z", + "iopub.status.idle": "2024-09-20T08:04:51.110055Z", + "shell.execute_reply": "2024-09-20T08:04:51.109408Z" }, "scrolled": true }, @@ -412,10 +412,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.857837Z", - "iopub.status.busy": "2024-09-19T15:20:30.857474Z", - "iopub.status.idle": "2024-09-19T15:20:30.860971Z", - "shell.execute_reply": "2024-09-19T15:20:30.860429Z" + "iopub.execute_input": "2024-09-20T08:04:51.112066Z", + "iopub.status.busy": "2024-09-20T08:04:51.111690Z", + "iopub.status.idle": "2024-09-20T08:04:51.115253Z", + "shell.execute_reply": "2024-09-20T08:04:51.114698Z" }, "scrolled": true }, @@ -459,10 +459,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:30.863029Z", - "iopub.status.busy": "2024-09-19T15:20:30.862650Z", - "iopub.status.idle": "2024-09-19T15:20:30.867030Z", - "shell.execute_reply": "2024-09-19T15:20:30.866459Z" + "iopub.execute_input": "2024-09-20T08:04:51.117235Z", + "iopub.status.busy": "2024-09-20T08:04:51.116858Z", + "iopub.status.idle": "2024-09-20T08:04:51.120953Z", + "shell.execute_reply": "2024-09-20T08:04:51.120417Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb index 5c8a7f221..d121c22d6 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-python-tutorial.ipynb @@ -30,10 +30,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:36.253571Z", - "iopub.status.busy": "2024-09-19T15:20:36.253378Z", - "iopub.status.idle": "2024-09-19T15:20:37.052431Z", - "shell.execute_reply": "2024-09-19T15:20:37.051680Z" + "iopub.execute_input": "2024-09-20T08:04:56.285577Z", + "iopub.status.busy": "2024-09-20T08:04:56.285390Z", + "iopub.status.idle": "2024-09-20T08:04:57.074991Z", + "shell.execute_reply": "2024-09-20T08:04:57.074135Z" } }, "outputs": [], @@ -63,10 +63,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.055101Z", - "iopub.status.busy": "2024-09-19T15:20:37.054673Z", - "iopub.status.idle": "2024-09-19T15:20:37.083561Z", - "shell.execute_reply": "2024-09-19T15:20:37.082954Z" + "iopub.execute_input": "2024-09-20T08:04:57.077701Z", + "iopub.status.busy": "2024-09-20T08:04:57.077477Z", + "iopub.status.idle": "2024-09-20T08:04:57.106824Z", + "shell.execute_reply": "2024-09-20T08:04:57.106134Z" } }, "outputs": [], @@ -86,10 +86,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.085886Z", - "iopub.status.busy": "2024-09-19T15:20:37.085466Z", - "iopub.status.idle": "2024-09-19T15:20:37.088921Z", - "shell.execute_reply": "2024-09-19T15:20:37.088399Z" + "iopub.execute_input": "2024-09-20T08:04:57.109191Z", + "iopub.status.busy": "2024-09-20T08:04:57.108977Z", + "iopub.status.idle": "2024-09-20T08:04:57.112793Z", + "shell.execute_reply": "2024-09-20T08:04:57.112113Z" } }, "outputs": [], @@ -152,10 +152,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.091164Z", - "iopub.status.busy": "2024-09-19T15:20:37.090671Z", - "iopub.status.idle": "2024-09-19T15:20:37.094487Z", - "shell.execute_reply": "2024-09-19T15:20:37.093913Z" + "iopub.execute_input": "2024-09-20T08:04:57.114844Z", + "iopub.status.busy": "2024-09-20T08:04:57.114385Z", + "iopub.status.idle": "2024-09-20T08:04:57.118302Z", + "shell.execute_reply": "2024-09-20T08:04:57.117665Z" } }, "outputs": [], @@ -183,10 +183,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.096505Z", - "iopub.status.busy": "2024-09-19T15:20:37.096195Z", - "iopub.status.idle": "2024-09-19T15:20:37.100125Z", - "shell.execute_reply": "2024-09-19T15:20:37.099470Z" + "iopub.execute_input": "2024-09-20T08:04:57.120321Z", + "iopub.status.busy": "2024-09-20T08:04:57.119964Z", + "iopub.status.idle": "2024-09-20T08:04:57.123634Z", + "shell.execute_reply": "2024-09-20T08:04:57.122977Z" } }, "outputs": [ @@ -235,10 +235,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.102430Z", - "iopub.status.busy": "2024-09-19T15:20:37.101998Z", - "iopub.status.idle": "2024-09-19T15:20:37.106269Z", - "shell.execute_reply": "2024-09-19T15:20:37.105733Z" + "iopub.execute_input": "2024-09-20T08:04:57.125686Z", + "iopub.status.busy": "2024-09-20T08:04:57.125348Z", + "iopub.status.idle": "2024-09-20T08:04:57.129363Z", + "shell.execute_reply": "2024-09-20T08:04:57.128721Z" } }, "outputs": [], @@ -260,10 +260,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.108376Z", - "iopub.status.busy": "2024-09-19T15:20:37.107986Z", - "iopub.status.idle": "2024-09-19T15:20:37.111492Z", - "shell.execute_reply": "2024-09-19T15:20:37.110947Z" + "iopub.execute_input": "2024-09-20T08:04:57.131241Z", + "iopub.status.busy": "2024-09-20T08:04:57.131047Z", + "iopub.status.idle": "2024-09-20T08:04:57.134546Z", + "shell.execute_reply": "2024-09-20T08:04:57.134014Z" } }, "outputs": [ @@ -297,10 +297,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.113627Z", - "iopub.status.busy": "2024-09-19T15:20:37.113247Z", - "iopub.status.idle": "2024-09-19T15:20:37.120230Z", - "shell.execute_reply": "2024-09-19T15:20:37.119691Z" + "iopub.execute_input": "2024-09-20T08:04:57.136514Z", + "iopub.status.busy": "2024-09-20T08:04:57.136104Z", + "iopub.status.idle": "2024-09-20T08:04:57.143225Z", + "shell.execute_reply": "2024-09-20T08:04:57.142676Z" } }, "outputs": [ @@ -365,10 +365,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.122232Z", - "iopub.status.busy": "2024-09-19T15:20:37.121840Z", - "iopub.status.idle": "2024-09-19T15:20:37.125924Z", - "shell.execute_reply": "2024-09-19T15:20:37.125402Z" + "iopub.execute_input": "2024-09-20T08:04:57.145391Z", + "iopub.status.busy": "2024-09-20T08:04:57.145016Z", + "iopub.status.idle": "2024-09-20T08:04:57.149019Z", + "shell.execute_reply": "2024-09-20T08:04:57.148408Z" } }, "outputs": [ @@ -416,10 +416,10 @@ "execution_count": 10, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.127943Z", - "iopub.status.busy": "2024-09-19T15:20:37.127562Z", - "iopub.status.idle": "2024-09-19T15:20:37.130866Z", - "shell.execute_reply": "2024-09-19T15:20:37.130249Z" + "iopub.execute_input": "2024-09-20T08:04:57.151091Z", + "iopub.status.busy": "2024-09-20T08:04:57.150712Z", + "iopub.status.idle": "2024-09-20T08:04:57.153911Z", + "shell.execute_reply": "2024-09-20T08:04:57.153388Z" } }, "outputs": [], @@ -441,10 +441,10 @@ "execution_count": 11, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.132981Z", - "iopub.status.busy": "2024-09-19T15:20:37.132616Z", - "iopub.status.idle": "2024-09-19T15:20:37.136577Z", - "shell.execute_reply": "2024-09-19T15:20:37.136020Z" + "iopub.execute_input": "2024-09-20T08:04:57.155752Z", + "iopub.status.busy": "2024-09-20T08:04:57.155555Z", + "iopub.status.idle": "2024-09-20T08:04:57.159550Z", + "shell.execute_reply": "2024-09-20T08:04:57.159001Z" } }, "outputs": [ @@ -510,10 +510,10 @@ "execution_count": 12, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.138521Z", - "iopub.status.busy": "2024-09-19T15:20:37.138137Z", - "iopub.status.idle": "2024-09-19T15:20:37.141618Z", - "shell.execute_reply": "2024-09-19T15:20:37.141066Z" + "iopub.execute_input": "2024-09-20T08:04:57.161481Z", + "iopub.status.busy": "2024-09-20T08:04:57.161287Z", + "iopub.status.idle": "2024-09-20T08:04:57.164451Z", + "shell.execute_reply": "2024-09-20T08:04:57.163872Z" } }, "outputs": [ @@ -548,10 +548,10 @@ "execution_count": 13, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.143514Z", - "iopub.status.busy": "2024-09-19T15:20:37.143321Z", - "iopub.status.idle": "2024-09-19T15:20:37.146923Z", - "shell.execute_reply": "2024-09-19T15:20:37.146371Z" + "iopub.execute_input": "2024-09-20T08:04:57.166197Z", + "iopub.status.busy": "2024-09-20T08:04:57.166003Z", + "iopub.status.idle": "2024-09-20T08:04:57.169700Z", + "shell.execute_reply": "2024-09-20T08:04:57.169153Z" } }, "outputs": [ @@ -584,10 +584,10 @@ "execution_count": 14, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.148809Z", - "iopub.status.busy": "2024-09-19T15:20:37.148615Z", - "iopub.status.idle": "2024-09-19T15:20:37.152291Z", - "shell.execute_reply": "2024-09-19T15:20:37.151633Z" + "iopub.execute_input": "2024-09-20T08:04:57.171415Z", + "iopub.status.busy": "2024-09-20T08:04:57.171224Z", + "iopub.status.idle": "2024-09-20T08:04:57.175042Z", + "shell.execute_reply": "2024-09-20T08:04:57.174479Z" } }, "outputs": [ @@ -622,10 +622,10 @@ "execution_count": 15, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.154451Z", - "iopub.status.busy": "2024-09-19T15:20:37.154076Z", - "iopub.status.idle": "2024-09-19T15:20:37.158194Z", - "shell.execute_reply": "2024-09-19T15:20:37.157535Z" + "iopub.execute_input": "2024-09-20T08:04:57.176949Z", + "iopub.status.busy": "2024-09-20T08:04:57.176756Z", + "iopub.status.idle": "2024-09-20T08:04:57.180667Z", + "shell.execute_reply": "2024-09-20T08:04:57.180126Z" } }, "outputs": [ @@ -669,10 +669,10 @@ "execution_count": 16, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.160178Z", - "iopub.status.busy": "2024-09-19T15:20:37.159830Z", - "iopub.status.idle": "2024-09-19T15:20:37.165053Z", - "shell.execute_reply": "2024-09-19T15:20:37.164417Z" + "iopub.execute_input": "2024-09-20T08:04:57.182652Z", + "iopub.status.busy": "2024-09-20T08:04:57.182445Z", + "iopub.status.idle": "2024-09-20T08:04:57.187573Z", + "shell.execute_reply": "2024-09-20T08:04:57.187026Z" } }, "outputs": [ @@ -733,10 +733,10 @@ "execution_count": 17, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.167020Z", - "iopub.status.busy": "2024-09-19T15:20:37.166636Z", - "iopub.status.idle": "2024-09-19T15:20:37.170507Z", - "shell.execute_reply": "2024-09-19T15:20:37.169947Z" + "iopub.execute_input": "2024-09-20T08:04:57.189550Z", + "iopub.status.busy": "2024-09-20T08:04:57.189328Z", + "iopub.status.idle": "2024-09-20T08:04:57.193091Z", + "shell.execute_reply": "2024-09-20T08:04:57.192550Z" } }, "outputs": [], @@ -761,10 +761,10 @@ "execution_count": 18, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.172528Z", - "iopub.status.busy": "2024-09-19T15:20:37.172148Z", - "iopub.status.idle": "2024-09-19T15:20:37.182098Z", - "shell.execute_reply": "2024-09-19T15:20:37.181543Z" + "iopub.execute_input": "2024-09-20T08:04:57.195051Z", + "iopub.status.busy": "2024-09-20T08:04:57.194839Z", + "iopub.status.idle": "2024-09-20T08:04:57.204775Z", + "shell.execute_reply": "2024-09-20T08:04:57.204252Z" } }, "outputs": [], @@ -857,10 +857,10 @@ "execution_count": 19, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.183982Z", - "iopub.status.busy": "2024-09-19T15:20:37.183781Z", - "iopub.status.idle": "2024-09-19T15:20:37.187184Z", - "shell.execute_reply": "2024-09-19T15:20:37.186636Z" + "iopub.execute_input": "2024-09-20T08:04:57.206910Z", + "iopub.status.busy": "2024-09-20T08:04:57.206425Z", + "iopub.status.idle": "2024-09-20T08:04:57.210024Z", + "shell.execute_reply": "2024-09-20T08:04:57.209481Z" } }, "outputs": [ @@ -897,10 +897,10 @@ "execution_count": 20, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:37.189284Z", - "iopub.status.busy": "2024-09-19T15:20:37.188784Z", - "iopub.status.idle": "2024-09-19T15:20:37.194382Z", - "shell.execute_reply": "2024-09-19T15:20:37.193713Z" + "iopub.execute_input": "2024-09-20T08:04:57.211891Z", + "iopub.status.busy": "2024-09-20T08:04:57.211695Z", + "iopub.status.idle": "2024-09-20T08:04:57.217102Z", + "shell.execute_reply": "2024-09-20T08:04:57.216547Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb index 8cc43dd18..d6fbb4d98 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-conductance.ipynb @@ -86,10 +86,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:39.593177Z", - "iopub.status.busy": "2024-09-19T15:20:39.592978Z", - "iopub.status.idle": "2024-09-19T15:20:40.409183Z", - "shell.execute_reply": "2024-09-19T15:20:40.408344Z" + "iopub.execute_input": "2024-09-20T08:04:59.639701Z", + "iopub.status.busy": "2024-09-20T08:04:59.639505Z", + "iopub.status.idle": "2024-09-20T08:05:00.439353Z", + "shell.execute_reply": "2024-09-20T08:05:00.438477Z" } }, "outputs": [], @@ -103,10 +103,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.411812Z", - "iopub.status.busy": "2024-09-19T15:20:40.411380Z", - "iopub.status.idle": "2024-09-19T15:20:40.442028Z", - "shell.execute_reply": "2024-09-19T15:20:40.441274Z" + "iopub.execute_input": "2024-09-20T08:05:00.441997Z", + "iopub.status.busy": "2024-09-20T08:05:00.441763Z", + "iopub.status.idle": "2024-09-20T08:05:00.473119Z", + "shell.execute_reply": "2024-09-20T08:05:00.472282Z" } }, "outputs": [], @@ -149,10 +149,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.444494Z", - "iopub.status.busy": "2024-09-19T15:20:40.444121Z", - "iopub.status.idle": "2024-09-19T15:20:40.713352Z", - "shell.execute_reply": "2024-09-19T15:20:40.712668Z" + "iopub.execute_input": "2024-09-20T08:05:00.475907Z", + "iopub.status.busy": "2024-09-20T08:05:00.475474Z", + "iopub.status.idle": "2024-09-20T08:05:00.746564Z", + "shell.execute_reply": "2024-09-20T08:05:00.745931Z" } }, "outputs": [ @@ -196,10 +196,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.715720Z", - "iopub.status.busy": "2024-09-19T15:20:40.715277Z", - "iopub.status.idle": "2024-09-19T15:20:40.847967Z", - "shell.execute_reply": "2024-09-19T15:20:40.847249Z" + "iopub.execute_input": "2024-09-20T08:05:00.749055Z", + "iopub.status.busy": "2024-09-20T08:05:00.748633Z", + "iopub.status.idle": "2024-09-20T08:05:00.879456Z", + "shell.execute_reply": "2024-09-20T08:05:00.878825Z" } }, "outputs": [ @@ -243,10 +243,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.849960Z", - "iopub.status.busy": "2024-09-19T15:20:40.849762Z", - "iopub.status.idle": "2024-09-19T15:20:40.858402Z", - "shell.execute_reply": "2024-09-19T15:20:40.857853Z" + "iopub.execute_input": "2024-09-20T08:05:00.881813Z", + "iopub.status.busy": "2024-09-20T08:05:00.881408Z", + "iopub.status.idle": "2024-09-20T08:05:00.889648Z", + "shell.execute_reply": "2024-09-20T08:05:00.889101Z" } }, "outputs": [ @@ -290,10 +290,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.860358Z", - "iopub.status.busy": "2024-09-19T15:20:40.859999Z", - "iopub.status.idle": "2024-09-19T15:20:40.876626Z", - "shell.execute_reply": "2024-09-19T15:20:40.876002Z" + "iopub.execute_input": "2024-09-20T08:05:00.891683Z", + "iopub.status.busy": "2024-09-20T08:05:00.891292Z", + "iopub.status.idle": "2024-09-20T08:05:00.908914Z", + "shell.execute_reply": "2024-09-20T08:05:00.908356Z" } }, "outputs": [ @@ -337,10 +337,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.878828Z", - "iopub.status.busy": "2024-09-19T15:20:40.878438Z", - "iopub.status.idle": "2024-09-19T15:20:40.997466Z", - "shell.execute_reply": "2024-09-19T15:20:40.996851Z" + "iopub.execute_input": "2024-09-20T08:05:00.910978Z", + "iopub.status.busy": "2024-09-20T08:05:00.910595Z", + "iopub.status.idle": "2024-09-20T08:05:01.027842Z", + "shell.execute_reply": "2024-09-20T08:05:01.027154Z" } }, "outputs": [ @@ -400,10 +400,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:40.999607Z", - "iopub.status.busy": "2024-09-19T15:20:40.999214Z", - "iopub.status.idle": "2024-09-19T15:20:41.094711Z", - "shell.execute_reply": "2024-09-19T15:20:41.094084Z" + "iopub.execute_input": "2024-09-20T08:05:01.030175Z", + "iopub.status.busy": "2024-09-20T08:05:01.029844Z", + "iopub.status.idle": "2024-09-20T08:05:01.123242Z", + "shell.execute_reply": "2024-09-20T08:05:01.122551Z" } }, "outputs": [ @@ -456,10 +456,10 @@ "execution_count": 9, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:41.096875Z", - "iopub.status.busy": "2024-09-19T15:20:41.096470Z", - "iopub.status.idle": "2024-09-19T15:20:41.172249Z", - "shell.execute_reply": "2024-09-19T15:20:41.171630Z" + "iopub.execute_input": "2024-09-20T08:05:01.125241Z", + "iopub.status.busy": "2024-09-20T08:05:01.125031Z", + "iopub.status.idle": "2024-09-20T08:05:01.197456Z", + "shell.execute_reply": "2024-09-20T08:05:01.196788Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb index a83e33a18..5799be094 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-cnexp.ipynb @@ -62,10 +62,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:42.871598Z", - "iopub.status.busy": "2024-09-19T15:20:42.871402Z", - "iopub.status.idle": "2024-09-19T15:20:43.657563Z", - "shell.execute_reply": "2024-09-19T15:20:43.656793Z" + "iopub.execute_input": "2024-09-20T08:05:03.153942Z", + "iopub.status.busy": "2024-09-20T08:05:03.153753Z", + "iopub.status.idle": "2024-09-20T08:05:03.952837Z", + "shell.execute_reply": "2024-09-20T08:05:03.951972Z" } }, "outputs": [], @@ -79,10 +79,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:43.660188Z", - "iopub.status.busy": "2024-09-19T15:20:43.659790Z", - "iopub.status.idle": "2024-09-19T15:20:43.690356Z", - "shell.execute_reply": "2024-09-19T15:20:43.689591Z" + "iopub.execute_input": "2024-09-20T08:05:03.955468Z", + "iopub.status.busy": "2024-09-20T08:05:03.955044Z", + "iopub.status.idle": "2024-09-20T08:05:03.985397Z", + "shell.execute_reply": "2024-09-20T08:05:03.984633Z" } }, "outputs": [], @@ -123,10 +123,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:43.692621Z", - "iopub.status.busy": "2024-09-19T15:20:43.692370Z", - "iopub.status.idle": "2024-09-19T15:20:44.111892Z", - "shell.execute_reply": "2024-09-19T15:20:44.111164Z" + "iopub.execute_input": "2024-09-20T08:05:03.988147Z", + "iopub.status.busy": "2024-09-20T08:05:03.987626Z", + "iopub.status.idle": "2024-09-20T08:05:04.413773Z", + "shell.execute_reply": "2024-09-20T08:05:04.413128Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:44.114178Z", - "iopub.status.busy": "2024-09-19T15:20:44.113946Z", - "iopub.status.idle": "2024-09-19T15:20:44.225009Z", - "shell.execute_reply": "2024-09-19T15:20:44.224412Z" + "iopub.execute_input": "2024-09-20T08:05:04.415827Z", + "iopub.status.busy": "2024-09-20T08:05:04.415595Z", + "iopub.status.idle": "2024-09-20T08:05:04.526662Z", + "shell.execute_reply": "2024-09-20T08:05:04.526032Z" } }, "outputs": [ @@ -207,10 +207,10 @@ "execution_count": 5, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:44.227124Z", - "iopub.status.busy": "2024-09-19T15:20:44.226730Z", - "iopub.status.idle": "2024-09-19T15:20:44.423291Z", - "shell.execute_reply": "2024-09-19T15:20:44.422711Z" + "iopub.execute_input": "2024-09-20T08:05:04.528727Z", + "iopub.status.busy": "2024-09-20T08:05:04.528516Z", + "iopub.status.idle": "2024-09-20T08:05:04.727451Z", + "shell.execute_reply": "2024-09-20T08:05:04.726875Z" } }, "outputs": [ @@ -255,10 +255,10 @@ "execution_count": 6, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:44.425501Z", - "iopub.status.busy": "2024-09-19T15:20:44.425131Z", - "iopub.status.idle": "2024-09-19T15:20:44.582612Z", - "shell.execute_reply": "2024-09-19T15:20:44.582026Z" + "iopub.execute_input": "2024-09-20T08:05:04.729814Z", + "iopub.status.busy": "2024-09-20T08:05:04.729411Z", + "iopub.status.idle": "2024-09-20T08:05:04.890560Z", + "shell.execute_reply": "2024-09-20T08:05:04.889928Z" } }, "outputs": [ @@ -303,10 +303,10 @@ "execution_count": 7, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:44.584730Z", - "iopub.status.busy": "2024-09-19T15:20:44.584340Z", - "iopub.status.idle": "2024-09-19T15:20:46.362845Z", - "shell.execute_reply": "2024-09-19T15:20:46.362153Z" + "iopub.execute_input": "2024-09-20T08:05:04.892840Z", + "iopub.status.busy": "2024-09-20T08:05:04.892428Z", + "iopub.status.idle": "2024-09-20T08:05:06.636356Z", + "shell.execute_reply": "2024-09-20T08:05:06.635630Z" } }, "outputs": [ @@ -351,10 +351,10 @@ "execution_count": 8, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:46.365084Z", - "iopub.status.busy": "2024-09-19T15:20:46.364676Z", - "iopub.status.idle": "2024-09-19T15:20:48.574129Z", - "shell.execute_reply": "2024-09-19T15:20:48.573497Z" + "iopub.execute_input": "2024-09-20T08:05:06.638615Z", + "iopub.status.busy": "2024-09-20T08:05:06.638210Z", + "iopub.status.idle": "2024-09-20T08:05:08.884932Z", + "shell.execute_reply": "2024-09-20T08:05:08.884249Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb index 9acc38cf7..269cbc3aa 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-derivimplicit.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:50.098867Z", - "iopub.status.busy": "2024-09-19T15:20:50.098481Z", - "iopub.status.idle": "2024-09-19T15:20:50.943570Z", - "shell.execute_reply": "2024-09-19T15:20:50.942761Z" + "iopub.execute_input": "2024-09-20T08:05:10.408385Z", + "iopub.status.busy": "2024-09-20T08:05:10.408166Z", + "iopub.status.idle": "2024-09-20T08:05:11.204022Z", + "shell.execute_reply": "2024-09-20T08:05:11.203125Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:50.945966Z", - "iopub.status.busy": "2024-09-19T15:20:50.945738Z", - "iopub.status.idle": "2024-09-19T15:20:50.975950Z", - "shell.execute_reply": "2024-09-19T15:20:50.975364Z" + "iopub.execute_input": "2024-09-20T08:05:11.206626Z", + "iopub.status.busy": "2024-09-20T08:05:11.206401Z", + "iopub.status.idle": "2024-09-20T08:05:11.236922Z", + "shell.execute_reply": "2024-09-20T08:05:11.236144Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:50.978138Z", - "iopub.status.busy": "2024-09-19T15:20:50.977744Z", - "iopub.status.idle": "2024-09-19T15:20:51.463391Z", - "shell.execute_reply": "2024-09-19T15:20:51.462681Z" + "iopub.execute_input": "2024-09-20T08:05:11.239226Z", + "iopub.status.busy": "2024-09-20T08:05:11.238821Z", + "iopub.status.idle": "2024-09-20T08:05:11.725976Z", + "shell.execute_reply": "2024-09-20T08:05:11.725241Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:51.465637Z", - "iopub.status.busy": "2024-09-19T15:20:51.465197Z", - "iopub.status.idle": "2024-09-19T15:20:51.751357Z", - "shell.execute_reply": "2024-09-19T15:20:51.750669Z" + "iopub.execute_input": "2024-09-20T08:05:11.728359Z", + "iopub.status.busy": "2024-09-20T08:05:11.728073Z", + "iopub.status.idle": "2024-09-20T08:05:12.019651Z", + "shell.execute_reply": "2024-09-20T08:05:12.018917Z" } }, "outputs": [ diff --git a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb index a069356c4..b545be7bd 100644 --- a/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb +++ b/.doctrees/nbsphinx/notebooks/nmodl-sympy-solver-sparse.ipynb @@ -39,10 +39,10 @@ "execution_count": 1, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:53.069547Z", - "iopub.status.busy": "2024-09-19T15:20:53.069348Z", - "iopub.status.idle": "2024-09-19T15:20:53.857770Z", - "shell.execute_reply": "2024-09-19T15:20:53.856910Z" + "iopub.execute_input": "2024-09-20T08:05:13.337080Z", + "iopub.status.busy": "2024-09-20T08:05:13.336884Z", + "iopub.status.idle": "2024-09-20T08:05:14.137728Z", + "shell.execute_reply": "2024-09-20T08:05:14.136914Z" } }, "outputs": [], @@ -56,10 +56,10 @@ "execution_count": 2, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:53.860230Z", - "iopub.status.busy": "2024-09-19T15:20:53.860013Z", - "iopub.status.idle": "2024-09-19T15:20:53.890598Z", - "shell.execute_reply": "2024-09-19T15:20:53.889939Z" + "iopub.execute_input": "2024-09-20T08:05:14.140347Z", + "iopub.status.busy": "2024-09-20T08:05:14.140115Z", + "iopub.status.idle": "2024-09-20T08:05:14.170164Z", + "shell.execute_reply": "2024-09-20T08:05:14.169543Z" } }, "outputs": [], @@ -100,10 +100,10 @@ "execution_count": 3, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:53.892985Z", - "iopub.status.busy": "2024-09-19T15:20:53.892575Z", - "iopub.status.idle": "2024-09-19T15:20:54.384497Z", - "shell.execute_reply": "2024-09-19T15:20:54.383774Z" + "iopub.execute_input": "2024-09-20T08:05:14.172337Z", + "iopub.status.busy": "2024-09-20T08:05:14.172105Z", + "iopub.status.idle": "2024-09-20T08:05:14.658522Z", + "shell.execute_reply": "2024-09-20T08:05:14.657823Z" } }, "outputs": [ @@ -165,10 +165,10 @@ "execution_count": 4, "metadata": { "execution": { - "iopub.execute_input": "2024-09-19T15:20:54.386809Z", - "iopub.status.busy": "2024-09-19T15:20:54.386566Z", - "iopub.status.idle": "2024-09-19T15:20:54.677242Z", - "shell.execute_reply": "2024-09-19T15:20:54.676578Z" + "iopub.execute_input": "2024-09-20T08:05:14.660601Z", + "iopub.status.busy": "2024-09-20T08:05:14.660372Z", + "iopub.status.idle": "2024-09-20T08:05:14.947744Z", + "shell.execute_reply": "2024-09-20T08:05:14.947037Z" } }, "outputs": [ diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html index f42518365..f287ce600 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_coreneuron_cpp_visitor.html @@ -1676,7 +1676,7 @@

-

Definition at line 1639 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1635 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -1998,7 +1998,7 @@

Returns
The target code string
-

Definition at line 2376 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2372 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2375,7 +2375,7 @@

Definition at line 1940 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1936 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2491,7 +2491,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 3009 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 3005 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2520,7 +2520,7 @@

Definition at line 2939 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2935 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2551,7 +2551,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2978 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2974 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2618,7 +2618,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2950 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2946 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2687,7 +2687,7 @@

Todo:
Data is not derived.

Need to add instance into instance struct? data used here is wrong in AoS because as in original implementation, data is not incremented every iteration for AoS. May be better to derive actual variable names? [resolved now?] slist needs to added as local variable

-

Definition at line 2587 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2583 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -2811,7 +2811,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2866 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2862 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3061,7 +3061,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2969 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2965 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3090,7 +3090,7 @@

Definition at line 2381 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2377 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3139,7 +3139,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1814 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1810 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3201,7 +3201,7 @@

nmodl::codegen::CodegenAccVisitor.

-

Definition at line 1613 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1609 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3264,7 +3264,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2932 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2928 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3301,7 +3301,7 @@

Definition at line 1778 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1774 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3457,7 +3457,7 @@

Definition at line 1655 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1651 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3493,7 +3493,7 @@

Definition at line 1591 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1587 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3522,7 +3522,7 @@

Definition at line 1561 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1557 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3553,7 +3553,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1608 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1604 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3731,7 +3731,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1519 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1515 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3869,7 +3869,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2271 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2267 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3898,7 +3898,7 @@

Definition at line 2323 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2319 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -3998,7 +3998,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2244 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2240 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4027,7 +4027,7 @@

Definition at line 2546 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2542 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4092,7 +4092,7 @@

Definition at line 2402 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2398 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4139,7 +4139,7 @@

Definition at line 2161 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2157 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4168,7 +4168,7 @@

Definition at line 2487 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2483 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4197,7 +4197,7 @@

Definition at line 2390 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2386 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4226,7 +4226,7 @@

Definition at line 2397 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2393 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4349,7 +4349,7 @@

Definition at line 2460 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2456 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4381,7 +4381,7 @@

nmodl::codegen::CodegenAccVisitor.

-

Definition at line 2448 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2444 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4413,7 +4413,7 @@

nmodl::codegen::CodegenAccVisitor.

-

Definition at line 2453 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2449 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4451,7 +4451,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2212 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2208 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4482,7 +4482,7 @@

nmodl::codegen::CodegenAccVisitor.

-

Definition at line 2676 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2672 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4513,7 +4513,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2018 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2014 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4544,7 +4544,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 1994 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1990 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4575,7 +4575,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2895 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2891 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4614,7 +4614,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2759 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2755 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4652,7 +4652,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2830 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2826 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4746,7 +4746,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2796 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2792 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4785,7 +4785,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2741 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2737 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4816,7 +4816,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2006 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2002 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4852,7 +4852,7 @@

Definition at line 1865 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1861 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -4884,7 +4884,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2686 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2682 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5003,7 +5003,7 @@

Definition at line 2355 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2351 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5032,7 +5032,7 @@

Definition at line 1618 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1614 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5127,7 +5127,7 @@

Definition at line 1456 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 1452 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5187,7 +5187,7 @@

nmodl::codegen::CodegenCppVisitor.

-

Definition at line 2957 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2953 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5219,7 +5219,7 @@

Todo:
Similar to neuron/coreneuron we are using first watch and ignoring rest.
-

Definition at line 2031 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2027 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5250,7 +5250,7 @@

Todo:
Similar to print_watch_activate, we are using only first watch.

need to verify with neuron/coreneuron about rest.

-

Definition at line 2079 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2075 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5462,7 +5462,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 3040 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 3036 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5494,7 +5494,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 3048 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 3044 of file codegen_coreneuron_cpp_visitor.cpp.

@@ -5526,7 +5526,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 3083 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 3076 of file codegen_coreneuron_cpp_visitor.cpp.

diff --git a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html index 34ddaba27..4c3a73437 100644 --- a/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html +++ b/doxygen/classnmodl_1_1codegen_1_1_codegen_cpp_visitor.html @@ -1521,7 +1521,7 @@

Returns
return a tuple <true, array_length> if variable is an array otherwise <false, 0>
-

Definition at line 1644 of file codegen_cpp_visitor.cpp.

+

Definition at line 1648 of file codegen_cpp_visitor.cpp.

@@ -1549,7 +1549,7 @@

-

Definition at line 1386 of file codegen_cpp_visitor.cpp.

+

Definition at line 1390 of file codegen_cpp_visitor.cpp.

@@ -2113,7 +2113,7 @@

-

Definition at line 1619 of file codegen_cpp_visitor.cpp.

+

Definition at line 1623 of file codegen_cpp_visitor.cpp.

@@ -2171,7 +2171,7 @@

-

Definition at line 1631 of file codegen_cpp_visitor.cpp.

+

Definition at line 1635 of file codegen_cpp_visitor.cpp.

@@ -4874,7 +4874,7 @@

-

Definition at line 1657 of file codegen_cpp_visitor.cpp.

+

Definition at line 1661 of file codegen_cpp_visitor.cpp.

@@ -5015,7 +5015,7 @@

Definition at line 1524 of file codegen_cpp_visitor.cpp.

+

Definition at line 1528 of file codegen_cpp_visitor.cpp.

@@ -5043,7 +5043,7 @@

Definition at line 1415 of file codegen_cpp_visitor.cpp.

+

Definition at line 1419 of file codegen_cpp_visitor.cpp.

@@ -5310,7 +5310,7 @@

Definition at line 1361 of file codegen_cpp_visitor.cpp.

+

Definition at line 1365 of file codegen_cpp_visitor.cpp.

@@ -6186,7 +6186,7 @@

nmodl::visitor::ConstVisitor.

-

Definition at line 1409 of file codegen_cpp_visitor.cpp.

+

Definition at line 1413 of file codegen_cpp_visitor.cpp.

diff --git a/doxygen/classnmodl_1_1visitor_1_1_sympy_solver_visitor.html b/doxygen/classnmodl_1_1visitor_1_1_sympy_solver_visitor.html index 49b60472a..319571651 100644 --- a/doxygen/classnmodl_1_1visitor_1_1_sympy_solver_visitor.html +++ b/doxygen/classnmodl_1_1visitor_1_1_sympy_solver_visitor.html @@ -1032,7 +1032,7 @@

-

Definition at line 305 of file sympy_solver_visitor.cpp.

+

Definition at line 306 of file sympy_solver_visitor.cpp.

@@ -1072,7 +1072,7 @@

-

Definition at line 358 of file sympy_solver_visitor.cpp.

+

Definition at line 359 of file sympy_solver_visitor.cpp.

@@ -1134,7 +1134,7 @@

nmodl::visitor::Visitor.

-

Definition at line 469 of file sympy_solver_visitor.cpp.

+

Definition at line 470 of file sympy_solver_visitor.cpp.

@@ -1167,7 +1167,7 @@

nmodl::visitor::Visitor.

-

Definition at line 493 of file sympy_solver_visitor.cpp.

+

Definition at line 494 of file sympy_solver_visitor.cpp.

@@ -1199,7 +1199,7 @@

nmodl::visitor::Visitor.

-

Definition at line 398 of file sympy_solver_visitor.cpp.

+

Definition at line 399 of file sympy_solver_visitor.cpp.

@@ -1231,7 +1231,7 @@

nmodl::visitor::Visitor.

-

Definition at line 630 of file sympy_solver_visitor.cpp.

+

Definition at line 631 of file sympy_solver_visitor.cpp.

@@ -1263,7 +1263,7 @@

nmodl::visitor::Visitor.

-

Definition at line 574 of file sympy_solver_visitor.cpp.

+

Definition at line 575 of file sympy_solver_visitor.cpp.

@@ -1296,7 +1296,7 @@

nmodl::visitor::Visitor.

-

Definition at line 588 of file sympy_solver_visitor.cpp.

+

Definition at line 589 of file sympy_solver_visitor.cpp.

@@ -1328,7 +1328,7 @@

nmodl::visitor::Visitor.

-

Definition at line 602 of file sympy_solver_visitor.cpp.

+

Definition at line 603 of file sympy_solver_visitor.cpp.

@@ -1361,7 +1361,7 @@

nmodl::visitor::Visitor.

-

Definition at line 616 of file sympy_solver_visitor.cpp.

+

Definition at line 617 of file sympy_solver_visitor.cpp.

@@ -1393,7 +1393,7 @@

nmodl::visitor::Visitor.

-

Definition at line 644 of file sympy_solver_visitor.cpp.

+

Definition at line 645 of file sympy_solver_visitor.cpp.

@@ -1425,7 +1425,7 @@

nmodl::visitor::Visitor.

-

Definition at line 637 of file sympy_solver_visitor.cpp.

+

Definition at line 638 of file sympy_solver_visitor.cpp.

@@ -1457,7 +1457,7 @@

nmodl::visitor::Visitor.

-

Definition at line 378 of file sympy_solver_visitor.cpp.

+

Definition at line 379 of file sympy_solver_visitor.cpp.

diff --git a/doxygen/codegen__coreneuron__cpp__visitor_8hpp_source.html b/doxygen/codegen__coreneuron__cpp__visitor_8hpp_source.html index 0f4158f56..f11b851d3 100644 --- a/doxygen/codegen__coreneuron__cpp__visitor_8hpp_source.html +++ b/doxygen/codegen__coreneuron__cpp__visitor_8hpp_source.html @@ -1093,57 +1093,57 @@
nmodl::codegen::CodegenCoreneuronCppVisitor::print_coreneuron_includes
void print_coreneuron_includes()
Print includes from coreneuron.
Definition: codegen_coreneuron_cpp_visitor.cpp:948
-
nmodl::codegen::CodegenCoreneuronCppVisitor::net_receive_buffering_declaration
virtual std::string net_receive_buffering_declaration()
Generate the target backend code for the net_receive_buffering function delcaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:2376
+
nmodl::codegen::CodegenCoreneuronCppVisitor::net_receive_buffering_declaration
virtual std::string net_receive_buffering_declaration()
Generate the target backend code for the net_receive_buffering function delcaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:2372
nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_cur_reduction_loop_required
virtual bool nrn_cur_reduction_loop_required()
Check if reduction block in nrn_cur required.
Definition: codegen_coreneuron_cpp_visitor.cpp:253
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_coreneuron_cpp_visitor.cpp:2244
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1519
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_coreneuron_cpp_visitor.cpp:2240
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1515
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_count_update_to_host
virtual void print_net_send_buf_count_update_to_host() const
Print the code to update NetSendBuffer_t count from device to host.
Definition: codegen_coreneuron_cpp_visitor.cpp:159
nmodl::codegen::CodegenCoreneuronCppVisitor
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Definition: codegen_coreneuron_cpp_visitor.hpp:62
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_prototypes
void print_function_prototypes() override
Print function and procedures prototype declaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:368
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2957
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_derivimplicit_kernel
void print_derivimplicit_kernel(const ast::Block &block)
Print derivative kernel when derivimplicit method is used.
Definition: codegen_coreneuron_cpp_visitor.cpp:2587
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2953
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_derivimplicit_kernel
void print_derivimplicit_kernel(const ast::Block &block)
Print derivative kernel when derivimplicit method is used.
Definition: codegen_coreneuron_cpp_visitor.cpp:2583
nmodl::codegen::CodegenCoreneuronCppVisitor::print_device_stream_wait
virtual void print_device_stream_wait() const
Print the code to synchronise/wait on stream specific to NrnThread.
Definition: codegen_coreneuron_cpp_visitor.cpp:179
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_struct_delete_from_device
virtual void print_instance_struct_delete_from_device()
Delete the instance struct from the device.
Definition: codegen_coreneuron_cpp_visitor.hpp:319
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_count_update_to_device
virtual void print_net_send_buf_count_update_to_device() const
Print the code to update NetSendBuffer_t count from host to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:169
nmodl::codegen::CodegenCppVisitor::info
codegen::CodegenInfo info
All ast information for code generation.
Definition: codegen_cpp_visitor.hpp:341
nmodl::codegen::CodegenCoreneuronCppVisitor::global_variable_name
std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
Determine the variable name for a global variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:854
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device
virtual void print_newtonspace_transfer_to_device() const
Print code block to transfer newtonspace structure to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:2676
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device
virtual void print_newtonspace_transfer_to_device() const
Print code block to transfer newtonspace structure to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:2672
nmodl::codegen::CodegenCppVisitor::CodegenCppVisitor
CodegenCppVisitor(std::string mod_filename, const std::string &output_dir, std::string float_type, const bool optimize_ionvar_copies, std::unique_ptr< nmodl::utils::Blame > blame)
Constructs the C++ code generator visitor.
Definition: codegen_cpp_visitor.hpp:255
nmodl::codegen::CodegenInfo::thread_data_index
int thread_data_index
thread_data_index indicates number of threads being allocated.
Definition: codegen_info.hpp:362
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_coreneuron_cpp_visitor.cpp:2212
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_begin
virtual void print_net_receive_loop_begin()
Print the code for the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2390
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_coreneuron_cpp_visitor.cpp:2208
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_begin
virtual void print_net_receive_loop_begin()
Print the code for the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2386
nmodl::codegen::CodegenCoreneuronCppVisitor::print_kernel_data_present_annotation_block_begin
virtual void print_kernel_data_present_annotation_block_begin()
Print accelerator annotations indicating data presence on device.
Definition: codegen_coreneuron_cpp_visitor.cpp:198
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2969
- +
nmodl::codegen::CodegenCoreneuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2965
+
nmodl::codegen::CodegenCoreneuronCppVisitor::int_variable_name
std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
Determine the name of an int variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:828
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print initial block statements.
Definition: codegen_coreneuron_cpp_visitor.cpp:1778
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_kernel
void print_net_receive_kernel()
Print net_receive kernel function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2487
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print initial block statements.
Definition: codegen_coreneuron_cpp_visitor.cpp:1774
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_kernel
void print_net_receive_kernel()
Print net_receive kernel function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2483
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_getters
void print_thread_getters()
Print the getter method for thread variables and ids.
Definition: codegen_coreneuron_cpp_visitor.cpp:761
nmodl::codegen::CodegenCoreneuronCppVisitor::simulator_name
std::string simulator_name() override
Name of the simulator the code was generated for.
Definition: codegen_coreneuron_cpp_visitor.cpp:58
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering
void print_net_send_buffering()
Print kernel for buffering net_send events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2460
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering
void print_net_send_buffering()
Print kernel for buffering net_send events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2456
nmodl::codegen::CodegenCoreneuronCppVisitor::namespace_name
virtual std::string namespace_name() override
Name of "our" namespace.
Definition: codegen_coreneuron_cpp_visitor.cpp:746
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
nmodl::codegen::CodegenCoreneuronCppVisitor::num_thread_objects
int num_thread_objects() const noexcept
Determine the number of threads to allocate.
Definition: codegen_coreneuron_cpp_visitor.hpp:92
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_coreneuron_cpp_visitor.cpp:2866
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_coreneuron_cpp_visitor.cpp:2862
nmodl::codegen::CodegenCoreneuronCppVisitor::print_dt_update_to_device
virtual void print_dt_update_to_device() const
Print the code to update dt from host to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:174
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init_acc_serial_annotation_block_end
virtual void print_net_init_acc_serial_annotation_block_end()
Print accelerator kernels end annotation for net_init kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:213
nmodl::codegen::CodegenCoreneuronCppVisitor::external_method_parameters
const ParamVector external_method_parameters(bool table=false) noexcept override
Parameters for functions in generated code that are called back from external code.
Definition: codegen_coreneuron_cpp_visitor.cpp:534
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nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init
void print_net_init()
Print initial block in the net receive block.
Definition: codegen_coreneuron_cpp_visitor.cpp:2323
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_coreneuron_cpp_visitor.cpp:2271
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2006
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init
void print_net_init()
Print initial block in the net receive block.
Definition: codegen_coreneuron_cpp_visitor.cpp:2319
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_coreneuron_cpp_visitor.cpp:2267
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2002
nmodl::codegen::CodegenCoreneuronCppVisitor::print_sdlists_init
void print_sdlists_init(bool print_initializers) override
Definition: codegen_coreneuron_cpp_visitor.cpp:981
symbol_table.hpp
Implement classes for representing symbol table at block and file scope.
- -
nmodl::codegen::CodegenCoreneuronCppVisitor::print_send_event_move
void print_send_event_move()
Print send event move block used in net receive as well as watch.
Definition: codegen_coreneuron_cpp_visitor.cpp:2355
+ +
nmodl::codegen::CodegenCoreneuronCppVisitor::print_send_event_move
void print_send_event_move()
Print send event move block used in net receive as well as watch.
Definition: codegen_coreneuron_cpp_visitor.cpp:2351
nmodl::codegen::CodegenCoreneuronCppVisitor::append_conc_write_statements
void append_conc_write_statements(std::vector< ShadowUseStatement > &statements, const Ion &ion, const std::string &concentration) override
Generate Function call statement for nrn_wrote_conc.
Definition: codegen_coreneuron_cpp_visitor.cpp:640
nmodl::codegen::CodegenCoreneuronCppVisitor::print_atomic_reduction_pragma
void print_atomic_reduction_pragma() override
Print atomic update pragma for reduction statements.
Definition: codegen_coreneuron_cpp_visitor.cpp:295
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_struct_copy_to_device
virtual void print_instance_struct_copy_to_device()
Transfer the instance struct to the device.
Definition: codegen_coreneuron_cpp_visitor.hpp:312
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variables_for_hoc
void print_global_variables_for_hoc() override
Print byte arrays that register scalar and vector variables for hoc interface.
Definition: codegen_coreneuron_cpp_visitor.cpp:1207
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_common_code
void print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)
Print the common code section for net receive related methods.
Definition: codegen_coreneuron_cpp_visitor.cpp:2161
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:2741
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_common_code
void print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)
Print the common code section for net receive related methods.
Definition: codegen_coreneuron_cpp_visitor.cpp:2157
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:2737
nmodl::codegen::CodegenCoreneuronCppVisitor::print_first_pointer_var_index_getter
void print_first_pointer_var_index_getter()
Print the getter method for index position of first pointer variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:686
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_setup_range_variable
void print_setup_range_variable()
Print the function that initialize range variable with different data type.
Definition: codegen_coreneuron_cpp_visitor.cpp:1618
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_setup_range_variable
void print_setup_range_variable()
Print the function that initialize range variable with different data type.
Definition: codegen_coreneuron_cpp_visitor.cpp:1614
nmodl::codegen::CodegenCoreneuronCppVisitor::internal_method_arguments
std::string internal_method_arguments() override
Arguments for functions that are defined and used internally.
Definition: codegen_coreneuron_cpp_visitor.cpp:504
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_struct_transfer_routine_declarations
virtual void print_instance_struct_transfer_routine_declarations()
Print declarations of the functions used by print_instance_struct_copy_to_device and print_instance_s...
Definition: codegen_coreneuron_cpp_visitor.hpp:290
nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_thread_arguments
std::string nrn_thread_arguments() const override
Arguments for "_threadargs_" macro in neuron implementation.
Definition: codegen_coreneuron_cpp_visitor.cpp:552
@@ -1159,85 +1159,85 @@
nmodl::codegen::CodegenCoreneuronCppVisitor::print_deriv_advance_flag_transfer_to_device
virtual void print_deriv_advance_flag_transfer_to_device() const
Print the code to copy derivative advance flag to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:149
nmodl::codegen::CodegenCoreneuronCppVisitor::print_first_random_var_index_getter
void print_first_random_var_index_getter()
Print the getter method for index position of first RANDOM variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:694
nmodl::ast::WatchStatement
Represent WATCH statement in NMODL.
Definition: watch_statement.hpp:39
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_before_after_block
virtual void print_before_after_block(const ast::Block *node, size_t block_id)
Print NMODL before / after block in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:1940
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_before_after_block
virtual void print_before_after_block(const ast::Block *node, size_t block_id)
Print NMODL before / after block in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:1936
nmodl::ast::BreakpointBlock
Represents a BREAKPOINT block in NMODL.
Definition: breakpoint_block.hpp:53
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_variable
void print_ion_variable() override
Print the ion variable struct.
Definition: codegen_coreneuron_cpp_visitor.cpp:1608
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_variable
void print_ion_variable() override
Print the ion variable struct.
Definition: codegen_coreneuron_cpp_visitor.cpp:1604
code_printer.hpp
Helper class for printing C/C++ code.
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_structure
void print_ion_var_structure()
Print structure of ion variables used for local copies.
Definition: codegen_coreneuron_cpp_visitor.cpp:1561
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_structure
void print_ion_var_structure()
Print structure of ion variables used for local copies.
Definition: codegen_coreneuron_cpp_visitor.cpp:1557
nmodl::codegen::CodegenCoreneuronCppVisitor::internal_method_parameters
ParamVector internal_method_parameters() override
Parameters for internally defined functions.
Definition: codegen_coreneuron_cpp_visitor.cpp:512
nmodl::codegen::CodegenCoreneuronCppVisitor::position_of_int_var
int position_of_int_var(const std::string &name) const override
Determine the position in the data array for a given int variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:73
nmodl::codegen::CodegenCoreneuronCppVisitor::print_channel_iteration_block_parallel_hint
virtual void print_channel_iteration_block_parallel_hint(BlockType type, const ast::Block *block)
Print pragma annotations for channel iterations.
Definition: codegen_coreneuron_cpp_visitor.cpp:230
nmodl::codegen::CodegenCoreneuronCppVisitor::is_constant_variable
virtual bool is_constant_variable(const std::string &name) const
Check if variable is qualified as constant.
Definition: codegen_coreneuron_cpp_visitor.cpp:124
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_procedure_helper
void print_function_procedure_helper(const ast::Block &node) override
Common helper function to help printing function or procedure blocks.
Definition: codegen_coreneuron_cpp_visitor.cpp:434
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_for_netcon
void visit_for_netcon(const ast::ForNetcon &node) override
visit node of type ast::ForNetcon
Definition: codegen_coreneuron_cpp_visitor.cpp:3048
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:2978
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2759
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_for_netcon
void visit_for_netcon(const ast::ForNetcon &node) override
visit node of type ast::ForNetcon
Definition: codegen_coreneuron_cpp_visitor.cpp:3044
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:2974
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2755
nmodl::codegen::CodegenCoreneuronCppVisitor::print_memory_allocation_routine
virtual void print_memory_allocation_routine() const
Print memory allocation routine.
Definition: codegen_coreneuron_cpp_visitor.cpp:315
nmodl::codegen::CodegenCoreneuronCppVisitor::print_check_table_thread_function
void print_check_table_thread_function()
Print check_table functions.
Definition: codegen_coreneuron_cpp_visitor.cpp:387
nmodl::codegen::CodegenCoreneuronCppVisitor::backend_name
std::string backend_name() const override
Name of the code generation backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:53
nmodl::codegen::CodegenCoreneuronCppVisitor::print_rhs_d_shadow_variables
virtual void print_rhs_d_shadow_variables()
Print the setup method for setting matrix shadow vectors.
Definition: codegen_coreneuron_cpp_visitor.cpp:258
nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_text
std::string process_verbatim_text(std::string const &text) override
Process a verbatim block for possible variable renaming.
Definition: codegen_coreneuron_cpp_visitor.cpp:602
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2546
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2542
nmodl::codegen::CodegenInfo::vectorize
bool vectorize
true if mod file is vectorizable (which should be always true for coreneuron) But there are some bloc...
Definition: codegen_info.hpp:312
nmodl::codegen::CodegenCoreneuronCppVisitor::optimize_ion_variable_copies
bool optimize_ion_variable_copies() const override
Check if ion variable copies should be avoided.
Definition: codegen_coreneuron_cpp_visitor.cpp:310
nmodl::codegen::CodegenCoreneuronCppVisitor::print_top_verbatim_blocks
void print_top_verbatim_blocks()
Print top level (global scope) verbatim blocks.
Definition: codegen_coreneuron_cpp_visitor.cpp:346
codegen_info.hpp
Various types to store code generation specific information.
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_global_var_structure
void print_mechanism_global_var_structure(bool print_initializers) override
Print the structure that wraps all global variables used in the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1060
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1994
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1990
nmodl::codegen::CodegenCoreneuronCppVisitor::print_kernel_data_present_annotation_block_end
virtual void print_kernel_data_present_annotation_block_end()
Print matching block end of accelerator annotations for data presence on device.
Definition: codegen_coreneuron_cpp_visitor.cpp:203
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_struct_transfer_routines
virtual void print_instance_struct_transfer_routines(std::vector< std::string > const &)
Print the definitions of the functions used by print_instance_struct_copy_to_device and print_instanc...
Definition: codegen_coreneuron_cpp_visitor.hpp:304
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2018
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2014
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_matrix_shadow_reduction
virtual void print_nrn_cur_matrix_shadow_reduction()
Print the reduction to matrix elements from shadow vectors.
Definition: codegen_coreneuron_cpp_visitor.cpp:279
nmodl::codegen::CodegenCoreneuronCppVisitor::print_memb_list_getter
void print_memb_list_getter()
Print the getter method for returning membrane list from NrnThread.
Definition: codegen_coreneuron_cpp_visitor.cpp:735
nmodl::codegen::CppObjectSpecifier::Inline
@ Inline
- -
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_variable_setup
void print_instance_variable_setup()
Print the function that initialize instance structure.
Definition: codegen_coreneuron_cpp_visitor.cpp:1655
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1865
+ +
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_variable_setup
void print_instance_variable_setup()
Print the function that initialize instance structure.
Definition: codegen_coreneuron_cpp_visitor.cpp:1651
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1861
nmodl::codegen::CodegenCoreneuronCppVisitor::get_variable_name
std::string get_variable_name(const std::string &name, bool use_instance=true) const override
Determine variable name in the structure of mechanism properties.
Definition: codegen_coreneuron_cpp_visitor.cpp:864
nmodl::codegen::CodegenCoreneuronCppVisitor::print_abort_routine
virtual void print_abort_routine() const
Print backend specific abort routine.
Definition: codegen_coreneuron_cpp_visitor.cpp:333
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2895
-
nmodl::codegen::CodegenCoreneuronCppVisitor::get_range_var_float_type
std::string get_range_var_float_type(const SymbolType &symbol)
Returns floating point type for given range variable symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:1639
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update
virtual void print_net_send_buffering_cnt_update() const
Print the code related to the update of NetSendBuffer_t cnt.
Definition: codegen_coreneuron_cpp_visitor.cpp:2448
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread related memory allocation and deallocation callbacks.
Definition: codegen_coreneuron_cpp_visitor.cpp:1456
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2891
+
nmodl::codegen::CodegenCoreneuronCppVisitor::get_range_var_float_type
std::string get_range_var_float_type(const SymbolType &symbol)
Returns floating point type for given range variable symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:1635
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update
virtual void print_net_send_buffering_cnt_update() const
Print the code related to the update of NetSendBuffer_t cnt.
Definition: codegen_coreneuron_cpp_visitor.cpp:2444
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread related memory allocation and deallocation callbacks.
Definition: codegen_coreneuron_cpp_visitor.cpp:1452
nmodl::ast::DerivimplicitCallback
Represent a callback to NEURON's derivimplicit solver.
Definition: derivimplicit_callback.hpp:38
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_buffering
void print_net_receive_buffering(bool need_mech_inst=true)
Print kernel for buffering net_receive events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2402
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_function_common_code
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_coreneuron_cpp_visitor.cpp:1814
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_buffering
void print_net_receive_buffering(bool need_mech_inst=true)
Print kernel for buffering net_receive events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2398
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_function_common_code
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_coreneuron_cpp_visitor.cpp:1810
nmodl::codegen::CodegenCoreneuronCppVisitor::functor_params
ParamVector functor_params() override
The parameters of the Newton solver "functor".
Definition: codegen_coreneuron_cpp_visitor.cpp:1032
logger.hpp
Implement logger based on spdlog library.
nmodl::SymbolType
parser::NmodlParser::symbol_type SymbolType
Definition: main_nmodl.cpp:33
nmodl::codegen::BlockType
BlockType
Helper to represent various block types.
Definition: codegen_cpp_visitor.hpp:56
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_register
void print_mechanism_register() override
Print the mechanism registration function.
Definition: codegen_coreneuron_cpp_visitor.cpp:1314
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_method_annotation
virtual void print_global_method_annotation()
Print backend specific global method annotation.
Definition: codegen_coreneuron_cpp_visitor.cpp:300
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_coreneuron_cpp_visitor.cpp:2830
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_coreneuron_cpp_visitor.cpp:2826
nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_thread_internal_arguments
std::string nrn_thread_internal_arguments() override
Arguments for "_threadargs_" macro in neuron implementation.
Definition: codegen_coreneuron_cpp_visitor.cpp:564
nmodl::codegen::CodegenCoreneuronCppVisitor::print_device_atomic_capture_annotation
virtual void print_device_atomic_capture_annotation() const
Print pragma annotation for increase and capture of variable in automatic way.
Definition: codegen_coreneuron_cpp_visitor.cpp:154
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_derivimplicit_callback
void visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) override
visit node of type ast::DerivimplicitCallback
Definition: codegen_coreneuron_cpp_visitor.cpp:3040
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_derivimplicit_callback
void visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) override
visit node of type ast::DerivimplicitCallback
Definition: codegen_coreneuron_cpp_visitor.cpp:3036
nmodl::codegen::CodegenCppVisitor
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Definition: codegen_cpp_visitor.hpp:237
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_get_memb_list
virtual void print_get_memb_list()
Print the target backend code for defining and checking a local Memb_list variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2381
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_get_memb_list
virtual void print_get_memb_list()
Print the target backend code for defining and checking a local Memb_list variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2377
nmodl::codegen::CodegenCoreneuronCppVisitor::print_num_variable_getter
void print_num_variable_getter()
Print the getter methods for float and integer variables count.
Definition: codegen_coreneuron_cpp_visitor.cpp:702
nmodl::codegen::CodegenCoreneuronCppVisitor::print_standard_includes
void print_standard_includes() override
Print standard C/C++ includes.
Definition: codegen_coreneuron_cpp_visitor.cpp:937
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_end
virtual void print_net_receive_loop_end()
Print the code for closing the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2397
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_end
virtual void print_net_receive_loop_end()
Print the code for closing the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2393
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mech_type_getter
void print_mech_type_getter()
Print the getter method for returning mechtype.
Definition: codegen_coreneuron_cpp_visitor.cpp:726
nmodl::codegen::CodegenCoreneuronCppVisitor::float_variable_name
std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
Determine the name of a float variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:810
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation
virtual void print_global_variable_device_update_annotation()
Print the pragma annotation to update global variables from host to the device.
Definition: codegen_coreneuron_cpp_visitor.cpp:1613
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation
virtual void print_global_variable_device_update_annotation()
Print the pragma annotation to update global variables from host to the device.
Definition: codegen_coreneuron_cpp_visitor.cpp:1609
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print NMODL function_table in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:448
nmodl::codegen::CodegenCoreneuronCppVisitor::add_variable_tqitem
void add_variable_tqitem(std::vector< IndexVariableInfo > &variables) override
Add the variable tqitem during get_int_variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:479
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
visit node of type ast::WatchStatement
Definition: codegen_coreneuron_cpp_visitor.cpp:3083
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
visit node of type ast::WatchStatement
Definition: codegen_coreneuron_cpp_visitor.cpp:3076
nmodl::codegen::CodegenCoreneuronCppVisitor::external_method_arguments
const std::string external_method_arguments() noexcept override
Arguments for external functions called from generated code.
Definition: codegen_coreneuron_cpp_visitor.cpp:529
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2796
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2792
nmodl::codegen::CodegenCoreneuronCppVisitor::print_backend_includes
virtual void print_backend_includes()
Print backend specific includes (none needed for C++ backend)
Definition: codegen_coreneuron_cpp_visitor.cpp:305
nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_token
std::string process_verbatim_token(const std::string &token)
Process a token in a verbatim block for possible variable renaming.
Definition: codegen_coreneuron_cpp_visitor.cpp:82
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2686
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2682
nmodl::codegen::CodegenCoreneuronCppVisitor::add_variable_point_process
void add_variable_point_process(std::vector< IndexVariableInfo > &variables) override
Add the variable point_process during get_int_variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:493
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_coreneuron_cpp_visitor.cpp:3009
- -
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_grow
virtual void print_net_send_buffering_grow()
Print statement that grows NetSendBuffering_t structure if needed.
Definition: codegen_coreneuron_cpp_visitor.cpp:2453
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_coreneuron_cpp_visitor.cpp:3005
+ +
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_grow
virtual void print_net_send_buffering_grow()
Print statement that grows NetSendBuffering_t structure if needed.
Definition: codegen_coreneuron_cpp_visitor.cpp:2449
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_update_to_host
virtual void print_net_send_buf_update_to_host() const
Print the code to update NetSendBuffer_t from device to host.
Definition: codegen_coreneuron_cpp_visitor.cpp:164
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_coreneuron_cpp_visitor.cpp:2950
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_coreneuron_cpp_visitor.cpp:2946
nmodl::codegen::CodegenCoreneuronCppVisitor::replace_if_verbatim_variable
std::string replace_if_verbatim_variable(std::string name)
Replace commonly used verbatim variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:573
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_constructor
virtual void print_ion_var_constructor(const std::vector< std::string > &members)
Print constructor of ion variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:1591
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_constructor
virtual void print_ion_var_constructor(const std::vector< std::string > &members)
Print constructor of ion variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:1587
nmodl::codegen::CodegenCoreneuronCppVisitor::position_of_float_var
int position_of_float_var(const std::string &name) const override
Determine the position in the data array for a given float variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:68
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
ast_visitor.hpp
Concrete visitor for all AST classes.
diff --git a/doxygen/codegen__cpp__visitor_8cpp_source.html b/doxygen/codegen__cpp__visitor_8cpp_source.html index 2ec628e8f..113f504b1 100644 --- a/doxygen/codegen__cpp__visitor_8cpp_source.html +++ b/doxygen/codegen__cpp__visitor_8cpp_source.html @@ -1450,324 +1450,328 @@
1354  variables.emplace_back(make_symbol(fmt::format("watch{}", i)), false, false, true);
1355  }
1356  }
-
1357  return variables;
-
1358 }
-
1359 
-
1360 
-
1361 void CodegenCppVisitor::setup(const Program& node) {
-
1362  program_symtab = node.get_symbol_table();
+
1357 
+
1358  if (info.for_netcon_used) {
+
1359  variables.emplace_back(make_symbol(naming::FOR_NETCON_VARIABLE), false, false, true);
+
1360  }
+
1361  return variables;
+
1362 }
1363 
-
1364  CodegenHelperVisitor v;
-
1365  info = v.analyze(node);
-
1366  info.mod_file = mod_filename;
+
1364 
+
1365 void CodegenCppVisitor::setup(const Program& node) {
+
1366  program_symtab = node.get_symbol_table();
1367 
-
1368  if (info.mod_suffix == "") {
-
1369  info.mod_suffix = std::filesystem::path(mod_filename).stem().string();
-
1370  }
-
1371  info.rsuffix = info.point_process ? "" : "_" + info.mod_suffix;
-
1372 
-
1373  if (!info.vectorize) {
-
1374  logger->warn(
-
1375  "CodegenCoreneuronCppVisitor : MOD file uses non-thread safe constructs of NMODL");
-
1376  }
-
1377 
-
1378  codegen_float_variables = get_float_variables();
-
1379  codegen_int_variables = get_int_variables();
-
1380 
-
1381  update_index_semantics();
-
1382 
-
1383  info.semantic_variable_count = int_variables_size();
-
1384 }
-
1385 
-
1386 std::string CodegenCppVisitor::compute_method_name(BlockType type) const {
-
1387  if (type == BlockType::Initial) {
-
1388  return method_name(naming::NRN_INIT_METHOD);
-
1389  }
-
1390  if (type == BlockType::Constructor) {
-
1391  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
-
1392  }
-
1393  if (type == BlockType::Destructor) {
-
1394  return method_name(naming::NRN_DESTRUCTOR_METHOD);
-
1395  }
-
1396  if (type == BlockType::State) {
-
1397  return method_name(naming::NRN_STATE_METHOD);
-
1398  }
-
1399  if (type == BlockType::Equation) {
-
1400  return method_name(naming::NRN_CUR_METHOD);
-
1401  }
-
1402  if (type == BlockType::Watch) {
-
1403  return method_name(naming::NRN_WATCH_CHECK_METHOD);
-
1404  }
-
1405  throw std::logic_error("compute_method_name not implemented");
-
1406 }
-
1407 
-
1408 
-
1409 void CodegenCppVisitor::visit_program(const Program& node) {
-
1410  setup(node);
-
1411  print_codegen_routines();
-
1412 }
-
1413 
-
1414 
-
1415 void CodegenCppVisitor::print_table_replacement_function(const ast::Block& node) {
-
1416  auto name = node.get_node_name();
-
1417  auto statement = get_table_statement(node);
-
1418  auto table_variables = statement->get_table_vars();
-
1419  auto with = statement->get_with()->eval();
-
1420  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
-
1421  auto tmin_name = get_variable_name("tmin_" + name);
-
1422  auto mfac_name = get_variable_name("mfac_" + name);
-
1423  auto function_name = method_name("f_" + name);
-
1424 
-
1425  printer->add_newline(2);
-
1426  print_function_declaration(node, name);
-
1427  printer->push_block();
-
1428  {
-
1429  const auto& params = node.get_parameters();
-
1430  printer->fmt_push_block("if ({} == 0)", use_table_var);
-
1431  if (node.is_procedure_block()) {
-
1432  printer->fmt_line("{}({}, {});",
-
1433  function_name,
-
1434  internal_method_arguments(),
-
1435  params[0].get()->get_node_name());
-
1436  printer->add_line("return 0;");
-
1437  } else {
-
1438  printer->fmt_line("return {}({}, {});",
-
1439  function_name,
-
1440  internal_method_arguments(),
-
1441  params[0].get()->get_node_name());
-
1442  }
-
1443  printer->pop_block();
-
1444 
-
1445  printer->fmt_line("double xi = {} * ({} - {});",
-
1446  mfac_name,
-
1447  params[0].get()->get_node_name(),
-
1448  tmin_name);
-
1449  printer->push_block("if (isnan(xi))");
-
1450  if (node.is_procedure_block()) {
-
1451  for (const auto& var: table_variables) {
-
1452  auto var_name = get_variable_name(var->get_node_name());
-
1453  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
-
1454  if (is_array) {
-
1455  for (int j = 0; j < array_length; j++) {
-
1456  printer->fmt_line("{}[{}] = xi;", var_name, j);
-
1457  }
-
1458  } else {
-
1459  printer->fmt_line("{} = xi;", var_name);
-
1460  }
-
1461  }
-
1462  printer->add_line("return 0;");
-
1463  } else {
-
1464  printer->add_line("return xi;");
-
1465  }
-
1466  printer->pop_block();
-
1467 
-
1468  printer->fmt_push_block("if (xi <= 0. || xi >= {}.)", with);
-
1469  printer->fmt_line("int index = (xi <= 0.) ? 0 : {};", with);
-
1470  if (node.is_procedure_block()) {
-
1471  for (const auto& variable: table_variables) {
-
1472  auto var_name = variable->get_node_name();
-
1473  auto instance_name = get_variable_name(var_name);
-
1474  auto table_name = get_variable_name("t_" + var_name);
-
1475  auto [is_array, array_length] = check_if_var_is_array(var_name);
-
1476  if (is_array) {
-
1477  for (int j = 0; j < array_length; j++) {
-
1478  printer->fmt_line(
-
1479  "{}[{}] = {}[{}][index];", instance_name, j, table_name, j);
-
1480  }
-
1481  } else {
-
1482  printer->fmt_line("{} = {}[index];", instance_name, table_name);
-
1483  }
-
1484  }
-
1485  printer->add_line("return 0;");
-
1486  } else {
-
1487  auto table_name = get_variable_name("t_" + name);
-
1488  printer->fmt_line("return {}[index];", table_name);
-
1489  }
-
1490  printer->pop_block();
-
1491 
-
1492  printer->add_line("int i = int(xi);");
-
1493  printer->add_line("double theta = xi - double(i);");
-
1494  if (node.is_procedure_block()) {
-
1495  for (const auto& var: table_variables) {
-
1496  auto var_name = var->get_node_name();
-
1497  auto instance_name = get_variable_name(var_name);
-
1498  auto table_name = get_variable_name("t_" + var_name);
-
1499  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
-
1500  if (is_array) {
-
1501  for (size_t j = 0; j < array_length; j++) {
-
1502  printer->fmt_line(
-
1503  "{0}[{1}] = {2}[{1}][i] + theta*({2}[{1}][i+1]-{2}[{1}][i]);",
-
1504  instance_name,
-
1505  j,
-
1506  table_name);
-
1507  }
-
1508  } else {
-
1509  printer->fmt_line("{0} = {1}[i] + theta*({1}[i+1]-{1}[i]);",
-
1510  instance_name,
-
1511  table_name);
-
1512  }
-
1513  }
-
1514  printer->add_line("return 0;");
-
1515  } else {
-
1516  auto table_name = get_variable_name("t_" + name);
-
1517  printer->fmt_line("return {0}[i] + theta * ({0}[i+1] - {0}[i]);", table_name);
-
1518  }
-
1519  }
-
1520  printer->pop_block();
-
1521 }
-
1522 
-
1523 
-
1524 void CodegenCppVisitor::print_table_check_function(const Block& node) {
-
1525  auto statement = get_table_statement(node);
-
1526  auto table_variables = statement->get_table_vars();
-
1527  auto depend_variables = statement->get_depend_vars();
-
1528  const auto& from = statement->get_from();
-
1529  const auto& to = statement->get_to();
-
1530  auto name = node.get_node_name();
-
1531  auto internal_params = internal_method_parameters();
-
1532  auto with = statement->get_with()->eval();
-
1533  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
-
1534  auto tmin_name = get_variable_name("tmin_" + name);
-
1535  auto mfac_name = get_variable_name("mfac_" + name);
-
1536  auto float_type = default_float_data_type();
-
1537 
-
1538  printer->add_newline(2);
-
1539  printer->fmt_push_block("void {}({})",
-
1540  table_update_function_name(name),
-
1541  get_parameter_str(internal_params));
-
1542  {
-
1543  printer->fmt_push_block("if ({} == 0)", use_table_var);
-
1544  printer->add_line("return;");
-
1545  printer->pop_block();
-
1546 
-
1547  printer->add_line("static bool make_table = true;");
-
1548  for (const auto& variable: depend_variables) {
-
1549  printer->fmt_line("static {} save_{};", float_type, variable->get_node_name());
-
1550  }
-
1551 
+
1368  CodegenHelperVisitor v;
+
1369  info = v.analyze(node);
+
1370  info.mod_file = mod_filename;
+
1371 
+
1372  if (info.mod_suffix == "") {
+
1373  info.mod_suffix = std::filesystem::path(mod_filename).stem().string();
+
1374  }
+
1375  info.rsuffix = info.point_process ? "" : "_" + info.mod_suffix;
+
1376 
+
1377  if (!info.vectorize) {
+
1378  logger->warn(
+
1379  "CodegenCoreneuronCppVisitor : MOD file uses non-thread safe constructs of NMODL");
+
1380  }
+
1381 
+
1382  codegen_float_variables = get_float_variables();
+
1383  codegen_int_variables = get_int_variables();
+
1384 
+
1385  update_index_semantics();
+
1386 
+
1387  info.semantic_variable_count = int_variables_size();
+
1388 }
+
1389 
+
1390 std::string CodegenCppVisitor::compute_method_name(BlockType type) const {
+
1391  if (type == BlockType::Initial) {
+
1392  return method_name(naming::NRN_INIT_METHOD);
+
1393  }
+
1394  if (type == BlockType::Constructor) {
+
1395  return method_name(naming::NRN_CONSTRUCTOR_METHOD);
+
1396  }
+
1397  if (type == BlockType::Destructor) {
+
1398  return method_name(naming::NRN_DESTRUCTOR_METHOD);
+
1399  }
+
1400  if (type == BlockType::State) {
+
1401  return method_name(naming::NRN_STATE_METHOD);
+
1402  }
+
1403  if (type == BlockType::Equation) {
+
1404  return method_name(naming::NRN_CUR_METHOD);
+
1405  }
+
1406  if (type == BlockType::Watch) {
+
1407  return method_name(naming::NRN_WATCH_CHECK_METHOD);
+
1408  }
+
1409  throw std::logic_error("compute_method_name not implemented");
+
1410 }
+
1411 
+
1412 
+
1413 void CodegenCppVisitor::visit_program(const Program& node) {
+
1414  setup(node);
+
1415  print_codegen_routines();
+
1416 }
+
1417 
+
1418 
+
1419 void CodegenCppVisitor::print_table_replacement_function(const ast::Block& node) {
+
1420  auto name = node.get_node_name();
+
1421  auto statement = get_table_statement(node);
+
1422  auto table_variables = statement->get_table_vars();
+
1423  auto with = statement->get_with()->eval();
+
1424  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
+
1425  auto tmin_name = get_variable_name("tmin_" + name);
+
1426  auto mfac_name = get_variable_name("mfac_" + name);
+
1427  auto function_name = method_name("f_" + name);
+
1428 
+
1429  printer->add_newline(2);
+
1430  print_function_declaration(node, name);
+
1431  printer->push_block();
+
1432  {
+
1433  const auto& params = node.get_parameters();
+
1434  printer->fmt_push_block("if ({} == 0)", use_table_var);
+
1435  if (node.is_procedure_block()) {
+
1436  printer->fmt_line("{}({}, {});",
+
1437  function_name,
+
1438  internal_method_arguments(),
+
1439  params[0].get()->get_node_name());
+
1440  printer->add_line("return 0;");
+
1441  } else {
+
1442  printer->fmt_line("return {}({}, {});",
+
1443  function_name,
+
1444  internal_method_arguments(),
+
1445  params[0].get()->get_node_name());
+
1446  }
+
1447  printer->pop_block();
+
1448 
+
1449  printer->fmt_line("double xi = {} * ({} - {});",
+
1450  mfac_name,
+
1451  params[0].get()->get_node_name(),
+
1452  tmin_name);
+
1453  printer->push_block("if (isnan(xi))");
+
1454  if (node.is_procedure_block()) {
+
1455  for (const auto& var: table_variables) {
+
1456  auto var_name = get_variable_name(var->get_node_name());
+
1457  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
+
1458  if (is_array) {
+
1459  for (int j = 0; j < array_length; j++) {
+
1460  printer->fmt_line("{}[{}] = xi;", var_name, j);
+
1461  }
+
1462  } else {
+
1463  printer->fmt_line("{} = xi;", var_name);
+
1464  }
+
1465  }
+
1466  printer->add_line("return 0;");
+
1467  } else {
+
1468  printer->add_line("return xi;");
+
1469  }
+
1470  printer->pop_block();
+
1471 
+
1472  printer->fmt_push_block("if (xi <= 0. || xi >= {}.)", with);
+
1473  printer->fmt_line("int index = (xi <= 0.) ? 0 : {};", with);
+
1474  if (node.is_procedure_block()) {
+
1475  for (const auto& variable: table_variables) {
+
1476  auto var_name = variable->get_node_name();
+
1477  auto instance_name = get_variable_name(var_name);
+
1478  auto table_name = get_variable_name("t_" + var_name);
+
1479  auto [is_array, array_length] = check_if_var_is_array(var_name);
+
1480  if (is_array) {
+
1481  for (int j = 0; j < array_length; j++) {
+
1482  printer->fmt_line(
+
1483  "{}[{}] = {}[{}][index];", instance_name, j, table_name, j);
+
1484  }
+
1485  } else {
+
1486  printer->fmt_line("{} = {}[index];", instance_name, table_name);
+
1487  }
+
1488  }
+
1489  printer->add_line("return 0;");
+
1490  } else {
+
1491  auto table_name = get_variable_name("t_" + name);
+
1492  printer->fmt_line("return {}[index];", table_name);
+
1493  }
+
1494  printer->pop_block();
+
1495 
+
1496  printer->add_line("int i = int(xi);");
+
1497  printer->add_line("double theta = xi - double(i);");
+
1498  if (node.is_procedure_block()) {
+
1499  for (const auto& var: table_variables) {
+
1500  auto var_name = var->get_node_name();
+
1501  auto instance_name = get_variable_name(var_name);
+
1502  auto table_name = get_variable_name("t_" + var_name);
+
1503  auto [is_array, array_length] = check_if_var_is_array(var->get_node_name());
+
1504  if (is_array) {
+
1505  for (size_t j = 0; j < array_length; j++) {
+
1506  printer->fmt_line(
+
1507  "{0}[{1}] = {2}[{1}][i] + theta*({2}[{1}][i+1]-{2}[{1}][i]);",
+
1508  instance_name,
+
1509  j,
+
1510  table_name);
+
1511  }
+
1512  } else {
+
1513  printer->fmt_line("{0} = {1}[i] + theta*({1}[i+1]-{1}[i]);",
+
1514  instance_name,
+
1515  table_name);
+
1516  }
+
1517  }
+
1518  printer->add_line("return 0;");
+
1519  } else {
+
1520  auto table_name = get_variable_name("t_" + name);
+
1521  printer->fmt_line("return {0}[i] + theta * ({0}[i+1] - {0}[i]);", table_name);
+
1522  }
+
1523  }
+
1524  printer->pop_block();
+
1525 }
+
1526 
+
1527 
+
1528 void CodegenCppVisitor::print_table_check_function(const Block& node) {
+
1529  auto statement = get_table_statement(node);
+
1530  auto table_variables = statement->get_table_vars();
+
1531  auto depend_variables = statement->get_depend_vars();
+
1532  const auto& from = statement->get_from();
+
1533  const auto& to = statement->get_to();
+
1534  auto name = node.get_node_name();
+
1535  auto internal_params = internal_method_parameters();
+
1536  auto with = statement->get_with()->eval();
+
1537  auto use_table_var = get_variable_name(naming::USE_TABLE_VARIABLE);
+
1538  auto tmin_name = get_variable_name("tmin_" + name);
+
1539  auto mfac_name = get_variable_name("mfac_" + name);
+
1540  auto float_type = default_float_data_type();
+
1541 
+
1542  printer->add_newline(2);
+
1543  printer->fmt_push_block("void {}({})",
+
1544  table_update_function_name(name),
+
1545  get_parameter_str(internal_params));
+
1546  {
+
1547  printer->fmt_push_block("if ({} == 0)", use_table_var);
+
1548  printer->add_line("return;");
+
1549  printer->pop_block();
+
1550 
+
1551  printer->add_line("static bool make_table = true;");
1552  for (const auto& variable: depend_variables) {
-
1553  const auto& var_name = variable->get_node_name();
-
1554  const auto& instance_name = get_variable_name(var_name);
-
1555  printer->fmt_push_block("if (save_{} != {})", var_name, instance_name);
-
1556  printer->add_line("make_table = true;");
-
1557  printer->pop_block();
-
1558  }
-
1559 
-
1560  printer->push_block("if (make_table)");
-
1561  {
-
1562  printer->add_line("make_table = false;");
+
1553  printer->fmt_line("static {} save_{};", float_type, variable->get_node_name());
+
1554  }
+
1555 
+
1556  for (const auto& variable: depend_variables) {
+
1557  const auto& var_name = variable->get_node_name();
+
1558  const auto& instance_name = get_variable_name(var_name);
+
1559  printer->fmt_push_block("if (save_{} != {})", var_name, instance_name);
+
1560  printer->add_line("make_table = true;");
+
1561  printer->pop_block();
+
1562  }
1563 
-
1564  printer->add_indent();
-
1565  printer->add_text(tmin_name, " = ");
-
1566  from->accept(*this);
-
1567  printer->add_text(';');
-
1568  printer->add_newline();
-
1569 
-
1570  printer->add_indent();
-
1571  printer->add_text("double tmax = ");
-
1572  to->accept(*this);
-
1573  printer->add_text(';');
-
1574  printer->add_newline();
-
1575 
-
1576 
-
1577  printer->fmt_line("double dx = (tmax-{}) / {}.;", tmin_name, with);
-
1578  printer->fmt_line("{} = 1./dx;", mfac_name);
+
1564  printer->push_block("if (make_table)");
+
1565  {
+
1566  printer->add_line("make_table = false;");
+
1567 
+
1568  printer->add_indent();
+
1569  printer->add_text(tmin_name, " = ");
+
1570  from->accept(*this);
+
1571  printer->add_text(';');
+
1572  printer->add_newline();
+
1573 
+
1574  printer->add_indent();
+
1575  printer->add_text("double tmax = ");
+
1576  to->accept(*this);
+
1577  printer->add_text(';');
+
1578  printer->add_newline();
1579 
-
1580  printer->fmt_line("double x = {};", tmin_name);
-
1581  printer->fmt_push_block("for (std::size_t i = 0; i < {}; x += dx, i++)", with + 1);
-
1582  auto function = method_name("f_" + name);
-
1583  if (node.is_procedure_block()) {
-
1584  printer->fmt_line("{}({}, x);", function, internal_method_arguments());
-
1585  for (const auto& variable: table_variables) {
-
1586  auto var_name = variable->get_node_name();
-
1587  auto instance_name = get_variable_name(var_name);
-
1588  auto table_name = get_variable_name("t_" + var_name);
-
1589  auto [is_array, array_length] = check_if_var_is_array(var_name);
-
1590  if (is_array) {
-
1591  for (int j = 0; j < array_length; j++) {
-
1592  printer->fmt_line(
-
1593  "{}[{}][i] = {}[{}];", table_name, j, instance_name, j);
-
1594  }
-
1595  } else {
-
1596  printer->fmt_line("{}[i] = {};", table_name, instance_name);
-
1597  }
-
1598  }
-
1599  } else {
-
1600  auto table_name = get_variable_name("t_" + name);
-
1601  printer->fmt_line("{}[i] = {}({}, x);",
-
1602  table_name,
-
1603  function,
-
1604  internal_method_arguments());
-
1605  }
-
1606  printer->pop_block();
-
1607 
-
1608  for (const auto& variable: depend_variables) {
-
1609  auto var_name = variable->get_node_name();
-
1610  auto instance_name = get_variable_name(var_name);
-
1611  printer->fmt_line("save_{} = {};", var_name, instance_name);
-
1612  }
-
1613  }
-
1614  printer->pop_block();
-
1615  }
-
1616  printer->pop_block();
-
1617 }
-
1618 
-
1619 std::string CodegenCppVisitor::get_object_specifiers(
-
1620  const std::unordered_set<CppObjectSpecifier>& specifiers) {
-
1621  std::string result;
-
1622  for (const auto& specifier: specifiers) {
-
1623  if (!result.empty()) {
-
1624  result += " ";
-
1625  }
-
1626  result += object_specifier_map[specifier];
-
1627  }
-
1628  return result;
-
1629 }
-
1630 
-
1631 const ast::TableStatement* CodegenCppVisitor::get_table_statement(const ast::Block& node) {
-
1632  const auto& table_statements = collect_nodes(node, {AstNodeType::TABLE_STATEMENT});
-
1633 
-
1634  if (table_statements.size() != 1) {
-
1635  auto message = fmt::format("One table statement expected in {} found {}",
-
1636  node.get_node_name(),
-
1637  table_statements.size());
-
1638  throw std::runtime_error(message);
-
1639  }
-
1640  return dynamic_cast<const ast::TableStatement*>(table_statements.front().get());
-
1641 }
-
1642 
-
1643 
-
1644 std::tuple<bool, int> CodegenCppVisitor::check_if_var_is_array(const std::string& name) {
-
1645  auto symbol = program_symtab->lookup_in_scope(name);
-
1646  if (!symbol) {
-
1647  throw std::runtime_error(
-
1648  fmt::format("CodegenCppVisitor:: {} not found in symbol table!", name));
-
1649  }
-
1650  if (symbol->is_array()) {
-
1651  return {true, symbol->get_length()};
-
1652  } else {
-
1653  return {false, 0};
-
1654  }
-
1655 }
-
1656 
-
1657 void CodegenCppVisitor::print_rename_state_vars() const {
-
1658  for (const auto& state: info.state_vars) {
-
1659  auto state_name = state->get_name();
-
1660  auto lhs = get_variable_name(state_name);
-
1661  auto rhs = get_variable_name(state_name + "0");
-
1662 
-
1663  if (state->is_array()) {
-
1664  auto size = state->get_length();
-
1665  for (int i = 0; i < state->get_length(); ++i) {
-
1666  printer->fmt_line("{}[{}] = {};", lhs, i, rhs);
-
1667  }
-
1668  } else {
-
1669  printer->fmt_line("{} = {};", lhs, rhs);
-
1670  }
-
1671  }
-
1672 }
-
1673 } // namespace codegen
-
1674 } // namespace nmodl
+
1580 
+
1581  printer->fmt_line("double dx = (tmax-{}) / {}.;", tmin_name, with);
+
1582  printer->fmt_line("{} = 1./dx;", mfac_name);
+
1583 
+
1584  printer->fmt_line("double x = {};", tmin_name);
+
1585  printer->fmt_push_block("for (std::size_t i = 0; i < {}; x += dx, i++)", with + 1);
+
1586  auto function = method_name("f_" + name);
+
1587  if (node.is_procedure_block()) {
+
1588  printer->fmt_line("{}({}, x);", function, internal_method_arguments());
+
1589  for (const auto& variable: table_variables) {
+
1590  auto var_name = variable->get_node_name();
+
1591  auto instance_name = get_variable_name(var_name);
+
1592  auto table_name = get_variable_name("t_" + var_name);
+
1593  auto [is_array, array_length] = check_if_var_is_array(var_name);
+
1594  if (is_array) {
+
1595  for (int j = 0; j < array_length; j++) {
+
1596  printer->fmt_line(
+
1597  "{}[{}][i] = {}[{}];", table_name, j, instance_name, j);
+
1598  }
+
1599  } else {
+
1600  printer->fmt_line("{}[i] = {};", table_name, instance_name);
+
1601  }
+
1602  }
+
1603  } else {
+
1604  auto table_name = get_variable_name("t_" + name);
+
1605  printer->fmt_line("{}[i] = {}({}, x);",
+
1606  table_name,
+
1607  function,
+
1608  internal_method_arguments());
+
1609  }
+
1610  printer->pop_block();
+
1611 
+
1612  for (const auto& variable: depend_variables) {
+
1613  auto var_name = variable->get_node_name();
+
1614  auto instance_name = get_variable_name(var_name);
+
1615  printer->fmt_line("save_{} = {};", var_name, instance_name);
+
1616  }
+
1617  }
+
1618  printer->pop_block();
+
1619  }
+
1620  printer->pop_block();
+
1621 }
+
1622 
+
1623 std::string CodegenCppVisitor::get_object_specifiers(
+
1624  const std::unordered_set<CppObjectSpecifier>& specifiers) {
+
1625  std::string result;
+
1626  for (const auto& specifier: specifiers) {
+
1627  if (!result.empty()) {
+
1628  result += " ";
+
1629  }
+
1630  result += object_specifier_map[specifier];
+
1631  }
+
1632  return result;
+
1633 }
+
1634 
+
1635 const ast::TableStatement* CodegenCppVisitor::get_table_statement(const ast::Block& node) {
+
1636  const auto& table_statements = collect_nodes(node, {AstNodeType::TABLE_STATEMENT});
+
1637 
+
1638  if (table_statements.size() != 1) {
+
1639  auto message = fmt::format("One table statement expected in {} found {}",
+
1640  node.get_node_name(),
+
1641  table_statements.size());
+
1642  throw std::runtime_error(message);
+
1643  }
+
1644  return dynamic_cast<const ast::TableStatement*>(table_statements.front().get());
+
1645 }
+
1646 
+
1647 
+
1648 std::tuple<bool, int> CodegenCppVisitor::check_if_var_is_array(const std::string& name) {
+
1649  auto symbol = program_symtab->lookup_in_scope(name);
+
1650  if (!symbol) {
+
1651  throw std::runtime_error(
+
1652  fmt::format("CodegenCppVisitor:: {} not found in symbol table!", name));
+
1653  }
+
1654  if (symbol->is_array()) {
+
1655  return {true, symbol->get_length()};
+
1656  } else {
+
1657  return {false, 0};
+
1658  }
+
1659 }
+
1660 
+
1661 void CodegenCppVisitor::print_rename_state_vars() const {
+
1662  for (const auto& state: info.state_vars) {
+
1663  auto state_name = state->get_name();
+
1664  auto lhs = get_variable_name(state_name);
+
1665  auto rhs = get_variable_name(state_name + "0");
+
1666 
+
1667  if (state->is_array()) {
+
1668  auto size = state->get_length();
+
1669  for (int i = 0; i < state->get_length(); ++i) {
+
1670  printer->fmt_line("{}[{}] = {};", lhs, i, rhs);
+
1671  }
+
1672  } else {
+
1673  printer->fmt_line("{} = {};", lhs, rhs);
+
1674  }
+
1675  }
+
1676 }
+
1677 } // namespace codegen
+
1678 } // namespace nmodl
nmodl::ast::FunctionCall::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:7061
@@ -1780,12 +1784,13 @@
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1099
nmodl::codegen::utils::format_double_string< CodegenCppVisitor >
std::string format_double_string< CodegenCppVisitor >(const std::string &s_value)
Definition: codegen_utils.cpp:24
nmodl::ast::LocalListStatement::get_variables
const LocalVarVector & get_variables() const noexcept
Getter for member variable LocalListStatement::variables.
Definition: local_list_statement.hpp:205
-
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1415
+
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1419
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:129
nmodl::ast::Verbatim
Represents a C code block.
Definition: verbatim.hpp:38
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:132
nmodl::codegen::CodegenCppVisitor::visit_name
void visit_name(const ast::Name &node) override
visit node of type ast::Name
Definition: codegen_cpp_visitor.cpp:829
+
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:141
nmodl::codegen::CodegenCppVisitor::has_parameter_of_name
bool has_parameter_of_name(const T &node, const std::string &name)
Check if function or procedure node has parameter with given name.
Definition: codegen_cpp_visitor.cpp:65
nmodl::codegen::CodegenCppVisitor::int_variables_size
int int_variables_size() const
Number of integer variables in the model.
Definition: codegen_cpp_visitor.cpp:179
nmodl::ast::Name::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:795
@@ -1803,7 +1808,7 @@
nmodl::codegen::CodegenCppVisitor::SymbolType
std::shared_ptr< symtab::Symbol > SymbolType
Definition: codegen_cpp_visitor.hpp:295
nmodl::codegen::CodegenCppVisitor::get_int_variable_index
int get_int_variable_index(const std::string &var_name)
Definition: codegen_cpp_visitor.cpp:406
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:84
-
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:168
+
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:171
nmodl::codegen::CodegenCppVisitor::print_procedure
void print_procedure(const ast::ProcedureBlock &node)
Print NMODL procedure in target backend code.
Definition: codegen_cpp_visitor.cpp:508
nmodl::ast::Ast::is_conductance_hint
virtual bool is_conductance_hint() const noexcept
Check if the ast node is an instance of ast::ConductanceHint.
Definition: ast.cpp:224
nmodl::codegen::CodegenCppVisitor::float_variables_size
int float_variables_size() const
Number of float variables in the model.
Definition: codegen_cpp_visitor.cpp:169
@@ -1821,7 +1826,7 @@
nmodl::codegen::MemberType::index
@ index
index / int variables
nmodl::visitor::SymtabVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: symtab_visitor.cpp:99
nmodl::ast::EigenLinearSolverBlock::get_setup_x_block
std::shared_ptr< StatementBlock > get_setup_x_block() const noexcept
Getter for member variable EigenLinearSolverBlock::setup_x_block.
Definition: eigen_linear_solver_block.hpp:210
-
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:144
+
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:147
nmodl::codegen::utils::format_float_string< CodegenCppVisitor >
std::string format_float_string< CodegenCppVisitor >(const std::string &s_value)
Definition: codegen_utils.cpp:34
nmodl::ast::Integer::get_value
int get_value() const noexcept
Getter for member variable Integer::value.
Definition: integer.hpp:157
nmodl::ast::IndexedName::get_name
std::shared_ptr< Identifier > get_name() const noexcept
Getter for member variable IndexedName::name.
Definition: indexed_name.hpp:167
@@ -1838,7 +1843,7 @@
nmodl::codegen::CodegenCppVisitor::visit_binary_expression
void visit_binary_expression(const ast::BinaryExpression &node) override
visit node of type ast::BinaryExpression
Definition: codegen_cpp_visitor.cpp:945
nmodl::ast::VarName
Represents a variable.
Definition: var_name.hpp:43
nmodl::ast::Integer
Represents an integer variable.
Definition: integer.hpp:49
-
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1619
+
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1623
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1175
nmodl::ast::Ast::is_expression_statement
virtual bool is_expression_statement() const noexcept
Check if the ast node is an instance of ast::ExpressionStatement.
Definition: ast.cpp:226
@@ -1897,7 +1902,7 @@
nmodl::codegen::regex_special_chars
const std::regex regex_special_chars
Definition: codegen_cpp_visitor.cpp:796
nmodl::ast::FromStatement::get_from
std::shared_ptr< Expression > get_from() const noexcept
Getter for member variable FromStatement::from.
Definition: from_statement.hpp:186
-
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1361
+
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1365
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:968
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:120
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1017
@@ -1921,7 +1926,7 @@
nmodl::ast::Ast::is_block_comment
virtual bool is_block_comment() const noexcept
Check if the ast node is an instance of ast::BlockComment.
Definition: ast.cpp:286
nmodl::codegen::utils::format_float_string
std::string format_float_string(const std::string &s_value)
Handles the float constants format being printed in the generated code.
nmodl::codegen::CodegenCppVisitor::visit_solution_expression
void visit_solution_expression(const ast::SolutionExpression &node) override
visit node of type ast::SolutionExpression
Definition: codegen_cpp_visitor.cpp:1029
-
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:141
+
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:144
nmodl::ast::FunctionCall::get_arguments
const ExpressionVector & get_arguments() const noexcept
Getter for member variable FunctionCall::arguments.
Definition: function_call.hpp:166
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:123
nmodl::codegen::CodegenCppVisitor::print_global_var_struct_decl
virtual void print_global_var_struct_decl()
Instantiate global var instance.
Definition: codegen_cpp_visitor.cpp:449
@@ -1931,7 +1936,7 @@
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:779
nmodl::ast::ParenExpression::get_expression
std::shared_ptr< Expression > get_expression() const noexcept
Getter for member variable ParenExpression::expression.
Definition: paren_expression.hpp:143
nmodl::ast::BinaryExpression::get_op
const BinaryOperator & get_op() const noexcept
Getter for member variable BinaryExpression::op.
Definition: binary_expression.hpp:170
-
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1524
+
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1528
nmodl::ast::Ast::is_from_statement
virtual bool is_from_statement() const noexcept
Check if the ast node is an instance of ast::FromStatement.
Definition: ast.cpp:230
nmodl::ast::PrimeName
Represents a prime variable (for ODE)
Definition: prime_name.hpp:48
nmodl::codegen::CodegenCppVisitor::read_ion_variable_name
static std::pair< std::string, std::string > read_ion_variable_name(const std::string &name)
Return ion variable name and corresponding ion read variable name.
Definition: codegen_cpp_visitor.cpp:394
@@ -1939,9 +1944,9 @@
nmodl::ast::ElseIfStatement::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable ElseIfStatement::statement_block.
Definition: else_if_statement.hpp:168
nmodl::visitor::RenameVisitor
Blindly rename given variable to new name
Definition: rename_visitor.hpp:43
nmodl::codegen::CodegenCppVisitor::get_arg_str
static std::string get_arg_str(const ParamVector &params)
Generate the string representing the parameters in a function call.
Definition: codegen_cpp_visitor.cpp:42
-
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:162
+
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:165
nmodl::ast::UnaryOperator::eval
std::string eval() const
Return enum value in string form.
Definition: unary_operator.hpp:214
-
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:200
+
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:203
codegen_utils.hpp
Implement utility functions for codegen visitors.
nmodl::ast::Boolean
Represents a boolean variable.
Definition: boolean.hpp:42
@@ -1957,10 +1962,10 @@
nmodl::ast::FunctionBlock::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:3963
nmodl::ast::UpdateDt
Statement to indicate a change in timestep in a given block.
Definition: update_dt.hpp:38
nmodl::ast::EigenNewtonSolverBlock::get_functor_block
std::shared_ptr< StatementBlock > get_functor_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::functor_block.
Definition: eigen_newton_solver_block.hpp:221
-
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1631
+
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1635
nmodl::codegen::CodegenCppVisitor::format_float_string
std::string format_float_string(const std::string &value)
Convert a given float value to its string representation.
Definition: codegen_cpp_visitor.cpp:198
-
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1644
+
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1648
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:624
nmodl::ast::SolutionExpression::get_node_to_solve
std::shared_ptr< Expression > get_node_to_solve() const noexcept
Getter for member variable SolutionExpression::node_to_solve.
Definition: solution_expression.hpp:154
nmodl::stringutils::split_string
static std::vector< std::string > split_string(const std::string &text, char delimiter)
Split a text in a list of words, using a given delimiter character.
Definition: string_utils.hpp:116
@@ -1990,7 +1995,7 @@
nmodl::codegen::BlockType
BlockType
Helper to represent various block types.
Definition: codegen_cpp_visitor.hpp:56
nmodl::ast::VarName::get_name
std::shared_ptr< Identifier > get_name() const noexcept
Getter for member variable VarName::name.
Definition: var_name.hpp:164
nmodl::ast::Program::get_symbol_table
symtab::SymbolTable * get_symbol_table() const override
Return associated symbol table for the current ast node.
Definition: program.hpp:153
-
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:159
+
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:162
nmodl::codegen::CodegenCppVisitor::breakpoint_current
std::string breakpoint_current(std::string current) const
Determine the variable name for the "current" used in breakpoint block taking into account intermedia...
Definition: codegen_cpp_visitor.cpp:355
nmodl::codegen::CodegenCppVisitor::visit_binary_operator
void visit_binary_operator(const ast::BinaryOperator &node) override
visit node of type ast::BinaryOperator
Definition: codegen_cpp_visitor.cpp:963
config.h
Version information and units file path.
@@ -1999,11 +2004,11 @@
nmodl::ast::IfStatement::get_elses
std::shared_ptr< ElseStatement > get_elses() const noexcept
Getter for member variable IfStatement::elses.
Definition: if_statement.hpp:191
nmodl::ast::BinaryExpression::get_lhs
std::shared_ptr< Expression > get_lhs() const noexcept
Getter for member variable BinaryExpression::lhs.
Definition: binary_expression.hpp:161
nmodl::ast::Ast::is_line_comment
virtual bool is_line_comment() const noexcept
Check if the ast node is an instance of ast::LineComment.
Definition: ast.cpp:284
-
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1386
+
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1390
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:66
nmodl::ast::Name
Represents a name.
Definition: name.hpp:44
nmodl::ast::Ast::is_while_statement
virtual bool is_while_statement() const noexcept
Check if the ast node is an instance of ast::WhileStatement.
Definition: ast.cpp:232
-
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1409
+
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1413
nmodl::ast::Ast::is_else_statement
virtual bool is_else_statement() const noexcept
Check if the ast node is an instance of ast::ElseStatement.
Definition: ast.cpp:238
nmodl::ast::FromStatement::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable FromStatement::statement_block.
Definition: from_statement.hpp:213
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
@@ -2014,7 +2019,7 @@
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:138
nmodl::ast::EigenNewtonSolverBlock::get_update_states_block
std::shared_ptr< StatementBlock > get_update_states_block() const noexcept
Getter for member variable EigenNewtonSolverBlock::update_states_block.
Definition: eigen_newton_solver_block.hpp:230
nmodl::codegen::utils::format_double_string
std::string format_double_string(const std::string &s_value)
Handles the double constants format being printed in the generated code.
- +
rename_visitor.hpp
Blindly rename given variable to new name
nmodl::codegen::BlockType::State
@ State
derivative block
nmodl::codegen::CodegenCppVisitor::nrn_state_required
bool nrn_state_required() const noexcept
Check if nrn_state function is required.
Definition: codegen_cpp_visitor.cpp:125
@@ -2024,7 +2029,7 @@
nmodl::ast::Block::get_parameters
virtual const ArgumentVector & get_parameters() const
Definition: block.hpp:50
nmodl::codegen::CodegenCppVisitor::visit_verbatim
void visit_verbatim(const ast::Verbatim &node) override
visit node of type ast::Verbatim
Definition: codegen_cpp_visitor.cpp:988
nmodl::ast::BinaryExpression
Represents binary expression in the NMODL.
Definition: binary_expression.hpp:52
-
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:150
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:81
nmodl::codegen::BlockType::Initial
@ Initial
initial block
nmodl::codegen::CodegenCppVisitor::statement_to_skip
static bool statement_to_skip(const ast::Statement &node)
Check if given statement should be skipped during code generation.
Definition: codegen_cpp_visitor.cpp:86
@@ -2042,7 +2047,7 @@
nmodl::ast::FromStatement::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:9196
nmodl::codegen::CodegenCppVisitor::visit_while_statement
void visit_while_statement(const ast::WhileStatement &node) override
visit node of type ast::WhileStatement
Definition: codegen_cpp_visitor.cpp:909
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
nmodl::ast::WhileStatement::get_condition
std::shared_ptr< Expression > get_condition() const noexcept
Getter for member variable WhileStatement::condition.
Definition: while_statement.hpp:159
nmodl::codegen::CodegenCppVisitor::visit_statement_block
void visit_statement_block(const ast::StatementBlock &node) override
Definition: codegen_cpp_visitor.cpp:978
diff --git a/doxygen/codegen__cpp__visitor_8hpp_source.html b/doxygen/codegen__cpp__visitor_8hpp_source.html index 045838b5e..0d2bd56d2 100644 --- a/doxygen/codegen__cpp__visitor_8hpp_source.html +++ b/doxygen/codegen__cpp__visitor_8hpp_source.html @@ -1678,7 +1678,7 @@
nmodl::codegen::CodegenCppVisitor::need_semicolon
static bool need_semicolon(const ast::Statement &node)
Check if a semicolon is required at the end of given statement.
Definition: codegen_cpp_visitor.cpp:209
nmodl::codegen::CodegenCppVisitor::update_index_semantics
void update_index_semantics()
populate all index semantics needed for registration with coreneuron
Definition: codegen_cpp_visitor.cpp:1099
-
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1415
+
nmodl::codegen::CodegenCppVisitor::print_table_replacement_function
void print_table_replacement_function(const ast::Block &)
Print replacement function for function or procedure using table.
Definition: codegen_cpp_visitor.cpp:1419
nmodl::codegen::CodegenCppVisitor::register_mechanism_arguments
virtual std::string register_mechanism_arguments() const =0
Arguments for register_mech or point_register_mech function.
nmodl::codegen::CodegenCppVisitor::print_g_unused
virtual void print_g_unused() const =0
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
@@ -1755,7 +1755,7 @@
nmodl::ast::VarName
Represents a variable.
Definition: var_name.hpp:43
nmodl::ast::Integer
Represents an integer variable.
Definition: integer.hpp:49
nmodl::codegen::BlockType::BlockTypeEnd
@ BlockTypeEnd
fake ending block type for loops on the enums. Keep it at the end
-
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1619
+
nmodl::codegen::CodegenCppVisitor::get_object_specifiers
std::string get_object_specifiers(const std::unordered_set< CppObjectSpecifier > &)
Definition: codegen_cpp_visitor.cpp:1623
nmodl::codegen::CodegenCppVisitor::get_float_variables
std::vector< SymbolType > get_float_variables() const
Determine all float variables required during code generation.
Definition: codegen_cpp_visitor.cpp:1175
nmodl::codegen::CodegenCppVisitor::print_net_move_call
virtual void print_net_move_call(const ast::FunctionCall &node)=0
Print call to net_move.
@@ -1803,7 +1803,7 @@
nmodl::codegen::CodegenCppVisitor::add_variable_tqitem
virtual void add_variable_tqitem(std::vector< IndexVariableInfo > &variables)=0
Add the variable tqitem during get_int_variables.
nmodl::codegen::CodegenCppVisitor::simulator_name
virtual std::string simulator_name()=0
Name of the simulator the code was generated for.
-
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1361
+
nmodl::codegen::CodegenCppVisitor::setup
void setup(const ast::Program &node)
Setup the target backend code generator.
Definition: codegen_cpp_visitor.cpp:1365
nmodl::codegen::CodegenCppVisitor::visit_unary_operator
void visit_unary_operator(const ast::UnaryOperator &node) override
visit node of type ast::UnaryOperator
Definition: codegen_cpp_visitor.cpp:968
nmodl::codegen::CodegenCppVisitor::visit_mutex_lock
void visit_mutex_lock(const ast::MutexLock &node) override
visit node of type ast::MutexLock
Definition: codegen_cpp_visitor.cpp:1017
nmodl::codegen::CodegenCppVisitor::print_net_event_call
virtual void print_net_event_call(const ast::FunctionCall &node)=0
Print call to net_event.
@@ -1834,7 +1834,7 @@
nmodl::codegen::CodegenCppVisitor::visit_var_name
void visit_var_name(const ast::VarName &node) override
Definition: codegen_cpp_visitor.cpp:847
nmodl::codegen::CppObjectSpecifier::Extern
@ Extern
nmodl::codegen::CodegenCppVisitor::print_nmodl_constants
void print_nmodl_constants()
Print the nmodl constants used in backend code.
Definition: codegen_cpp_visitor.cpp:779
-
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1524
+
nmodl::codegen::CodegenCppVisitor::print_table_check_function
void print_table_check_function(const ast::Block &)
Print check_function() for functions or procedure using table.
Definition: codegen_cpp_visitor.cpp:1528
nmodl::ast::PrimeName
Represents a prime variable (for ODE)
Definition: prime_name.hpp:48
nmodl::codegen::CodegenCppVisitor::read_ion_variable_name
static std::pair< std::string, std::string > read_ion_variable_name(const std::string &name)
Return ion variable name and corresponding ion read variable name.
Definition: codegen_cpp_visitor.cpp:394
nmodl::codegen::CodegenCppVisitor::get_arg_str
static std::string get_arg_str(const ParamVector &params)
Generate the string representing the parameters in a function call.
Definition: codegen_cpp_visitor.cpp:42
@@ -1850,12 +1850,12 @@
nmodl::codegen::CodegenCppVisitor::printing_net_receive
bool printing_net_receive
true if currently net_receive block being printed
Definition: codegen_cpp_visitor.hpp:378
nmodl::codegen::CodegenCppVisitor::process_verbatim_text
virtual std::string process_verbatim_text(std::string const &text)=0
Process a verbatim block for possible variable renaming.
nmodl::ast::UpdateDt
Statement to indicate a change in timestep in a given block.
Definition: update_dt.hpp:38
-
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1631
+
nmodl::codegen::CodegenCppVisitor::get_table_statement
const ast::TableStatement * get_table_statement(const ast::Block &)
Definition: codegen_cpp_visitor.cpp:1635
nmodl::codegen::CodegenCppVisitor::print_global_variables_for_hoc
virtual void print_global_variables_for_hoc()=0
Print byte arrays that register scalar and vector variables for hoc interface.
nmodl::codegen::CppObjectSpecifier::ThreadLocal
@ ThreadLocal
nmodl::codegen::CodegenCppVisitor::format_float_string
std::string format_float_string(const std::string &value)
Convert a given float value to its string representation.
Definition: codegen_cpp_visitor.cpp:198
-
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1644
+
nmodl::codegen::CodegenCppVisitor::check_if_var_is_array
std::tuple< bool, int > check_if_var_is_array(const std::string &name)
Check if the given name exist in the symbol.
Definition: codegen_cpp_visitor.cpp:1648
nmodl::codegen::CodegenCppVisitor::is_functor_const
bool is_functor_const(const ast::StatementBlock &variable_block, const ast::StatementBlock &functor_block)
Checks whether the functor_block generated by sympy solver modifies any variable outside its scope.
Definition: codegen_cpp_visitor.cpp:624
nmodl::codegen::CppObjectSpecifier::Inline
@ Inline
nmodl::codegen::CodegenCppVisitor::get_parameter_str
static std::string get_parameter_str(const ParamVector &params)
Generate the string representing the procedure parameter declaration.
Definition: codegen_cpp_visitor.cpp:51
@@ -1903,9 +1903,9 @@
nmodl::codegen::CodegenCppVisitor
Visitor for printing C++ code compatible with legacy api of CoreNEURON
Definition: codegen_cpp_visitor.hpp:237
nmodl::codegen::CodegenCppVisitor::CodegenCppVisitor
CodegenCppVisitor(std::string mod_filename, std::ostream &stream, std::string float_type, const bool optimize_ionvar_copies, std::unique_ptr< nmodl::utils::Blame > blame=nullptr)
Constructs the C++ code generator visitor.
Definition: codegen_cpp_visitor.hpp:283
nmodl::codegen::CodegenCppVisitor::instance_struct
std::string instance_struct() const
Name of structure that wraps range variables.
Definition: codegen_cpp_visitor.hpp:427
-
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1386
+
nmodl::codegen::CodegenCppVisitor::compute_method_name
std::string compute_method_name(BlockType type) const
Definition: codegen_cpp_visitor.cpp:1390
nmodl::ast::Name
Represents a name.
Definition: name.hpp:44
-
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1409
+
nmodl::codegen::CodegenCppVisitor::visit_program
void visit_program(const ast::Program &program) override
Main and only member function to call after creating an instance of this class.
Definition: codegen_cpp_visitor.cpp:1413
nmodl::codegen::CodegenCppVisitor::mod_filename
std::string mod_filename
Name of mod file (without .mod suffix)
Definition: codegen_cpp_visitor.hpp:323
nmodl::codegen::CodegenCppVisitor::get_variable_name
virtual std::string get_variable_name(const std::string &name, bool use_instance=true) const =0
Determine variable name in the structure of mechanism properties.
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
@@ -1914,7 +1914,7 @@
nmodl::codegen::CodegenCppVisitor::print_prcellstate_macros
void print_prcellstate_macros() const
Print declaration of macro NRN_PRCELLSTATE for debugging.
Definition: codegen_cpp_visitor.cpp:533
nmodl::codegen::CppObjectSpecifier::Static
@ Static
nmodl::codegen::CodegenCppVisitor::printer
std::unique_ptr< CodePrinter > printer
Code printer object for target (C++)
Definition: codegen_cpp_visitor.hpp:317
- +
nmodl::codegen::CodegenCppVisitor::nrn_state_required
bool nrn_state_required() const noexcept
Check if nrn_state function is required.
Definition: codegen_cpp_visitor.cpp:125
nmodl::codegen::BlockType::State
@ State
derivative block
nmodl::codegen::CodegenCppVisitor::add_escape_quote
std::string add_escape_quote(const std::string &text) const
Add quotes to string to be output.
Definition: codegen_cpp_visitor.hpp:1024
diff --git a/doxygen/codegen__info_8hpp_source.html b/doxygen/codegen__info_8hpp_source.html index f20a13ebb..4f88c607e 100644 --- a/doxygen/codegen__info_8hpp_source.html +++ b/doxygen/codegen__info_8hpp_source.html @@ -857,7 +857,7 @@
nmodl::codegen::Ion::is_ionic_current
bool is_ionic_current(const std::string &text) const
Check if variable name is a ionic current.
Definition: codegen_info.hpp:126
nmodl::codegen::Ion::Ion
Ion(std::string name)
Definition: codegen_info.hpp:74
nmodl::codegen::Ion::intra_conc_pointer_name
std::string intra_conc_pointer_name() const
Definition: codegen_info.hpp:186
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
nmodl::codegen::naming::RANDOM_SEMANTIC
static constexpr char RANDOM_SEMANTIC[]
semantic type for RANDOM variable
Definition: codegen_naming.hpp:129
nmodl::codegen::naming::NET_SEND_SEMANTIC
static constexpr char NET_SEND_SEMANTIC[]
semantic type for net send call
Definition: codegen_naming.hpp:132
+
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:141
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:96
nmodl::codegen::naming::DEFAULT_LOCAL_VAR_TYPE
static constexpr char DEFAULT_LOCAL_VAR_TYPE[]
default local variable type
Definition: codegen_naming.hpp:111
nmodl::codegen::naming::CNEXP_METHOD
static constexpr char CNEXP_METHOD[]
cnexp method in nmodl
Definition: codegen_naming.hpp:30
-
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:153
+
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:156
nmodl::codegen::naming::POINT_PROCESS_VARIABLE
static constexpr char POINT_PROCESS_VARIABLE[]
inbuilt neuron variable for point process
Definition: codegen_naming.hpp:69
-
nmodl::codegen::naming::NRN_JACOB_METHOD
static constexpr char NRN_JACOB_METHOD[]
nrn_jacob method in generated code
Definition: codegen_naming.hpp:165
+
nmodl::codegen::naming::NRN_JACOB_METHOD
static constexpr char NRN_JACOB_METHOD[]
nrn_jacob method in generated code
Definition: codegen_naming.hpp:168
nmodl::codegen::naming::NTHREAD_D_SHADOW
static constexpr char NTHREAD_D_SHADOW[]
shadow d variable in neuron thread structure
Definition: codegen_naming.hpp:93
nmodl::codegen::naming::VOLTAGE_UNUSED_VARIABLE
static constexpr char VOLTAGE_UNUSED_VARIABLE[]
range variable for voltage when unused (for vectorized model)
Definition: codegen_naming.hpp:84
-
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:168
+
nmodl::codegen::naming::NRN_WATCH_CHECK_METHOD
static constexpr char NRN_WATCH_CHECK_METHOD[]
nrn_watch_check method in generated c++ file
Definition: codegen_naming.hpp:171
nmodl::codegen::naming::POINT_PROCESS
static constexpr char POINT_PROCESS[]
point process keyword in nmodl
Definition: codegen_naming.hpp:57
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
-
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:144
+
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:147
nmodl::codegen::naming::NTHREAD_DT_VARIABLE
static constexpr char NTHREAD_DT_VARIABLE[]
dt variable in neuron thread structure
Definition: codegen_naming.hpp:105
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:63
-
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:156
+
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:159
nmodl::codegen::naming::SPARSE_METHOD
static constexpr char SPARSE_METHOD[]
sparse method in nmodl
Definition: codegen_naming.hpp:42
nmodl::codegen::naming::ARTIFICIAL_CELL
static constexpr char ARTIFICIAL_CELL[]
artificial cell keyword in nmodl
Definition: codegen_naming.hpp:54
nmodl::codegen::naming::CONDUCTANCE_VARIABLE
static constexpr char CONDUCTANCE_VARIABLE[]
range variable for conductance
Definition: codegen_naming.hpp:75
@@ -331,14 +335,14 @@
nmodl::codegen::naming::NTHREAD_RHS_SHADOW
static constexpr char NTHREAD_RHS_SHADOW[]
shadow rhs variable in neuron thread structure
Definition: codegen_naming.hpp:90
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:78
nmodl::codegen::naming::POINT_PROCESS_SEMANTIC
static constexpr char POINT_PROCESS_SEMANTIC[]
semantic type for point process variable
Definition: codegen_naming.hpp:120
-
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:186
+
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:189
nmodl::codegen::naming::NMODL_VERSION
static constexpr char NMODL_VERSION[]
nmodl language version
Definition: codegen_naming.hpp:21
-
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:141
-
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:171
+
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:144
+
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:174
nmodl::codegen::naming::POINTER_SEMANTIC
static constexpr char POINTER_SEMANTIC[]
semantic type for pointer variable
Definition: codegen_naming.hpp:123
nmodl::codegen::naming::AREA_SEMANTIC
static constexpr char AREA_SEMANTIC[]
semantic type for area variable
Definition: codegen_naming.hpp:117
-
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:162
-
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:200
+
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:165
+
nmodl::codegen::naming::RANDOM_FUNCTIONS_MAPPING
static std::unordered_map< std::string, std::string > RANDOM_FUNCTIONS_MAPPING
Definition: codegen_naming.hpp:203
nmodl::codegen::naming::TQITEM_VARIABLE
static constexpr char TQITEM_VARIABLE[]
inbuilt neuron variable for tqitem process
Definition: codegen_naming.hpp:72
nmodl::codegen::naming::DEFAULT_INTEGER_TYPE
static constexpr char DEFAULT_INTEGER_TYPE[]
default integer variable type
Definition: codegen_naming.hpp:114
nmodl::codegen::naming::CVODE_T_V_METHOD
static constexpr char CVODE_T_V_METHOD[]
cvode_t_v method in nmodl
Definition: codegen_naming.hpp:39
@@ -349,21 +353,21 @@
nmodl::codegen::naming::NET_MOVE_METHOD
static constexpr char NET_MOVE_METHOD[]
net_move function call in nmodl
Definition: codegen_naming.hpp:48
nmodl::codegen::naming::EULER_METHOD
static constexpr char EULER_METHOD[]
euler method in nmodl
Definition: codegen_naming.hpp:27
nmodl::codegen::naming::NET_EVENT_METHOD
static constexpr char NET_EVENT_METHOD[]
net_event function call in nmodl
Definition: codegen_naming.hpp:45
-
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:159
+
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:162
nmodl::codegen::naming::AREA_VARIABLE
static constexpr char AREA_VARIABLE[]
similar to node_area but user can explicitly declare it as area
Definition: codegen_naming.hpp:66
nmodl::codegen::naming::AFTER_CVODE_METHOD
static constexpr char AFTER_CVODE_METHOD[]
cvode method in nmodl
Definition: codegen_naming.hpp:33
nmodl::codegen::naming::T_SAVE_VARIABLE
static constexpr char T_SAVE_VARIABLE[]
variable t indicating last execution time of net receive block
Definition: codegen_naming.hpp:87
nmodl::codegen::naming::FOR_NETCON_SEMANTIC
static constexpr char FOR_NETCON_SEMANTIC[]
semantic type for for_netcon statement
Definition: codegen_naming.hpp:138
nmodl::codegen::naming::NTHREAD_T_VARIABLE
static constexpr char NTHREAD_T_VARIABLE[]
t variable in neuron thread structure
Definition: codegen_naming.hpp:102
nmodl::codegen::naming::DIAM_VARIABLE
static constexpr char DIAM_VARIABLE[]
inbuilt neuron variable for diameter of the compartment
Definition: codegen_naming.hpp:60
-
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:150
nmodl::codegen::naming::CONDUCTANCE_UNUSED_VARIABLE
static constexpr char CONDUCTANCE_UNUSED_VARIABLE[]
range variable when conductance is not used (for vectorized model)
Definition: codegen_naming.hpp:81
-
nmodl::codegen::naming::NRN_POINTERINDEX
static constexpr char NRN_POINTERINDEX[]
hoc_nrnpointerindex name
Definition: codegen_naming.hpp:180
-
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:174
+
nmodl::codegen::naming::NRN_POINTERINDEX
static constexpr char NRN_POINTERINDEX[]
hoc_nrnpointerindex name
Definition: codegen_naming.hpp:183
+
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:177
nmodl::codegen::naming::CVODE_T_METHOD
static constexpr char CVODE_T_METHOD[]
cvode_t method in nmodl
Definition: codegen_naming.hpp:36
-
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:150
+
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:153
nmodl::codegen::naming::NET_SEND_METHOD
static constexpr char NET_SEND_METHOD[]
net_send function call in nmodl
Definition: codegen_naming.hpp:51
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180

So, the R in AST needs to be renamed with (*R).

-

Definition at line 2310 of file codegen_coreneuron_cpp_visitor.cpp.

+

Definition at line 2306 of file codegen_coreneuron_cpp_visitor.cpp.

diff --git a/doxygen/namespacenmodl_1_1codegen_1_1naming.html b/doxygen/namespacenmodl_1_1codegen_1_1naming.html index 0dcb234e0..97a05a83c 100644 --- a/doxygen/namespacenmodl_1_1codegen_1_1naming.html +++ b/doxygen/namespacenmodl_1_1codegen_1_1naming.html @@ -224,6 +224,9 @@ static constexpr char FOR_NETCON_SEMANTIC [] = "fornetcon"  semantic type for for_netcon statement More...
  +static constexpr char FOR_NETCON_VARIABLE [] = "fornetcon_data" + name of the integer variabe to store FOR_NETCON info. More...
+  static constexpr char NRN_INIT_METHOD [] = "nrn_init"  nrn_init method in generated code More...
  @@ -739,6 +742,32 @@

Definition at line 138 of file codegen_naming.hpp.

+ + + +

◆ FOR_NETCON_VARIABLE

+ +
+
+ + + + + +
+ + + + +
constexpr char nmodl::codegen::naming::FOR_NETCON_VARIABLE[] = "fornetcon_data"
+ 		+staticconstexpr
+
+ +

name of the integer variabe to store FOR_NETCON info.

+ +

Definition at line 141 of file codegen_naming.hpp.

+
@@ -789,7 +818,7 @@

Definition at line 177 of file codegen_naming.hpp.

+

Definition at line 180 of file codegen_naming.hpp.

@@ -972,7 +1001,7 @@

Definition at line 156 of file codegen_naming.hpp.

+

Definition at line 159 of file codegen_naming.hpp.

@@ -998,7 +1027,7 @@

Definition at line 144 of file codegen_naming.hpp.

+

Definition at line 147 of file codegen_naming.hpp.

@@ -1024,7 +1053,7 @@

Definition at line 162 of file codegen_naming.hpp.

+

Definition at line 165 of file codegen_naming.hpp.

@@ -1050,7 +1079,7 @@

Definition at line 147 of file codegen_naming.hpp.

+

Definition at line 150 of file codegen_naming.hpp.

@@ -1076,7 +1105,7 @@

Definition at line 141 of file codegen_naming.hpp.

+

Definition at line 144 of file codegen_naming.hpp.

@@ -1102,7 +1131,7 @@

Definition at line 165 of file codegen_naming.hpp.

+

Definition at line 168 of file codegen_naming.hpp.

@@ -1128,7 +1157,7 @@

Definition at line 180 of file codegen_naming.hpp.

+

Definition at line 183 of file codegen_naming.hpp.

@@ -1154,7 +1183,7 @@

Definition at line 150 of file codegen_naming.hpp.

+

Definition at line 153 of file codegen_naming.hpp.

@@ -1180,7 +1209,7 @@

Definition at line 153 of file codegen_naming.hpp.

+

Definition at line 156 of file codegen_naming.hpp.

@@ -1206,7 +1235,7 @@

Definition at line 159 of file codegen_naming.hpp.

+

Definition at line 162 of file codegen_naming.hpp.

@@ -1232,7 +1261,7 @@

Definition at line 168 of file codegen_naming.hpp.

+

Definition at line 171 of file codegen_naming.hpp.

@@ -1472,7 +1501,7 @@

{"random_ipick", "nrnran123_ipick"},
{"random_dpick", "nrnran123_dblpick"}}
-

Definition at line 200 of file codegen_naming.hpp.

+

Definition at line 203 of file codegen_naming.hpp.

@@ -1576,7 +1605,7 @@

Definition at line 171 of file codegen_naming.hpp.

+

Definition at line 174 of file codegen_naming.hpp.

@@ -1602,7 +1631,7 @@

Definition at line 174 of file codegen_naming.hpp.

+

Definition at line 177 of file codegen_naming.hpp.

@@ -1691,7 +1720,7 @@

Definition at line 186 of file codegen_naming.hpp.

+

Definition at line 189 of file codegen_naming.hpp.

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+"group__ast__type.html#ggac392e49849e60c05e42ea02c7b445033a292355e725443311d6cdf9ac446c5395", +"group__codegen__details.html#gga2d0a1f473f039b495e9cc349c3b57dbbaaa8a105043d90127c760e67170853c2c", +"logger_8hpp_source.html", +"pointer__var_8hpp.html", +"structnmodl_1_1codegen_1_1_codegen_info.html#a937636a93f8059e1b6e6fb9aac1bda2e", +"symbol__properties_8hpp.html#ad91684881aec64302e92c96e32a04d4f", +"units__visitor_8hpp_source.html" ]; var SYNCONMSG = 'click to disable panel synchronisation'; diff --git a/doxygen/navtreeindex25.js b/doxygen/navtreeindex25.js index a9f78b949..f500ab57f 100644 --- a/doxygen/navtreeindex25.js +++ b/doxygen/navtreeindex25.js @@ -6,61 +6,62 @@ var NAVTREEINDEX25 = "codegen__info_8hpp_source.html":[3,0,1,1,11], "codegen__naming_8hpp.html":[3,0,1,1,12], "codegen__naming_8hpp.html#a0045fd6f49fae28de5171e28a2502084":[3,0,1,1,12,14], -"codegen__naming_8hpp.html#a0270814558507d8f98795e1974ba89d4":[3,0,1,1,12,42], 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['replaced_5fstatements_5256',['replaced_statements',['../classnmodl_1_1visitor_1_1_inline_visitor.html#a4ac2dab8490509564098820e12506cc5',1,'nmodl::visitor::InlineVisitor']]], + ['replaced_5fstatements_5frange_5257',['replaced_statements_range',['../classnmodl_1_1visitor_1_1_sympy_replace_solutions_visitor.html#a644e68bbac24239e99c800877ecb2950',1,'nmodl::visitor::SympyReplaceSolutionsVisitor']]], + ['replacements_5258',['replacements',['../classnmodl_1_1visitor_1_1_sympy_replace_solutions_visitor.html#adee0b2ddd16c3eb7648393cab3cd7455',1,'nmodl::visitor::SympyReplaceSolutionsVisitor']]], + ['require_5fwrote_5fconc_5259',['require_wrote_conc',['../structnmodl_1_1codegen_1_1_codegen_info.html#a4bcbe36d2867e8a47f8c9770b1542b42',1,'nmodl::codegen::CodegenInfo']]], + ['result_5260',['result',['../classnmodl_1_1parser_1_1_verbatim_driver.html#acbef0308b6228aa7374ad3784bcf9c7f',1,'nmodl::parser::VerbatimDriver::result()'],['../classnmodl_1_1printer_1_1_code_printer.html#afb44676fe368466b54584b99d7f32108',1,'nmodl::printer::CodePrinter::result()'],['../classnmodl_1_1printer_1_1_j_s_o_n_printer.html#abf933c244b6dafbd2d4bfcb072bac0ac',1,'nmodl::printer::JSONPrinter::result()'],['../classnmodl_1_1printer_1_1_n_m_o_d_l_printer.html#acb30bd1654b386c8a97bc8ebf1588ede',1,'nmodl::printer::NMODLPrinter::result()']]], + ['rhs_5261',['rhs',['../structnmodl_1_1codegen_1_1_shadow_use_statement.html#abaf923aecaed924ee6c7147b43b11f87',1,'nmodl::codegen::ShadowUseStatement::rhs()'],['../classnmodl_1_1parser_1_1diffeq_1_1_diff_eq_context.html#a097571cfede2e56e07c14f67da6d023d',1,'nmodl::parser::diffeq::DiffEqContext::rhs()'],['../classnmodl_1_1ast_1_1_binary_expression.html#ae7b30e477152d41c4e3bf213892d64fc',1,'nmodl::ast::BinaryExpression::rhs()'],['../classnmodl_1_1ast_1_1_non_lin_equation.html#a1eff10b19c5a8a097f476af183fcf044',1,'nmodl::ast::NonLinEquation::rhs()']]], + ['rows_5262',['rows',['../structnmodl_1_1utils_1_1_table_data.html#a605a25702332726991bf997bd9c18a7f',1,'nmodl::utils::TableData']]], + ['rsuffix_5263',['rsuffix',['../structnmodl_1_1codegen_1_1_codegen_info.html#a934bcce95f02054d82a0101b39eb0579',1,'nmodl::codegen::CodegenInfo']]] ]; diff --git a/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html b/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html index 95b63892b..e7c338a9d 100644 --- a/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html +++ b/doxygen/src_2codegen_2codegen__coreneuron__cpp__visitor_8cpp_source.html @@ -1522,1686 +1522,1680 @@
1426  net_recv_init_arg);
1427  }
1428  if (info.for_netcon_used) {
-
1429  // index where information about FOR_NETCON is stored in the integer array
-
1430  const auto index =
-
1431  std::find_if(info.semantics.begin(), info.semantics.end(), [](const IndexSemantics& a) {
-
1432  return a.name == naming::FOR_NETCON_SEMANTIC;
-
1433  })->index;
-
1434  printer->fmt_line("add_nrn_fornetcons(mech_type, {});", index);
+
1429  const auto index = position_of_int_var(naming::FOR_NETCON_VARIABLE);
+
1430  printer->fmt_line("add_nrn_fornetcons(mech_type, {});", index);
+
1431  }
+
1432 
+
1433  if (info.net_event_used || info.net_send_used) {
+
1434  printer->add_line("hoc_register_net_send_buffering(mech_type);");
1435  }
-
1436 
-
1437  if (info.net_event_used || info.net_send_used) {
-
1438  printer->add_line("hoc_register_net_send_buffering(mech_type);");
-
1439  }
-
1440 
-
1441  /// register all before/after blocks
-
1442  for (size_t i = 0; i < info.before_after_blocks.size(); i++) {
-
1443  // register type and associated function name for the block
-
1444  const auto& block = info.before_after_blocks[i];
-
1445  std::string register_type = get_register_type_for_ba_block(block);
-
1446  std::string function_name = method_name(fmt::format("nrn_before_after_{}", i));
-
1447  printer->fmt_line("hoc_reg_ba(mech_type, {}, {});", function_name, register_type);
-
1448  }
-
1449 
-
1450  // register variables for hoc
-
1451  printer->add_line("hoc_register_var(hoc_scalar_double, hoc_vector_double, NULL);");
-
1452  printer->pop_block();
-
1453 }
-
1454 
-
1455 
-
1456 void CodegenCoreneuronCppVisitor::print_thread_memory_callbacks() {
-
1457  if (!info.thread_callback_register) {
-
1458  return;
-
1459  }
-
1460 
-
1461  // thread_mem_init callback
-
1462  printer->add_newline(2);
-
1463  printer->add_line("/** thread memory allocation callback */");
-
1464  printer->push_block("static void thread_mem_init(ThreadDatum* thread) ");
-
1465 
-
1466  if (info.vectorize && info.derivimplicit_used()) {
-
1467  printer->fmt_line("thread[dith{}()].pval = nullptr;", info.derivimplicit_list_num);
-
1468  }
-
1469  if (info.vectorize && (info.top_local_thread_size != 0)) {
-
1470  auto length = info.top_local_thread_size;
-
1471  auto allocation = fmt::format("(double*)mem_alloc({}, sizeof(double))", length);
-
1472  printer->fmt_line("thread[top_local_var_tid()].pval = {};", allocation);
-
1473  }
-
1474  if (info.thread_var_data_size != 0) {
-
1475  auto length = info.thread_var_data_size;
-
1476  auto thread_data = get_variable_name("thread_data");
-
1477  auto thread_data_in_use = get_variable_name("thread_data_in_use");
-
1478  auto allocation = fmt::format("(double*)mem_alloc({}, sizeof(double))", length);
-
1479  printer->fmt_push_block("if ({})", thread_data_in_use);
-
1480  printer->fmt_line("thread[thread_var_tid()].pval = {};", allocation);
-
1481  printer->chain_block("else");
-
1482  printer->fmt_line("thread[thread_var_tid()].pval = {};", thread_data);
-
1483  printer->fmt_line("{} = 1;", thread_data_in_use);
-
1484  printer->pop_block();
-
1485  }
-
1486  printer->pop_block();
-
1487  printer->add_newline(2);
-
1488 
+
1436 
+
1437  /// register all before/after blocks
+
1438  for (size_t i = 0; i < info.before_after_blocks.size(); i++) {
+
1439  // register type and associated function name for the block
+
1440  const auto& block = info.before_after_blocks[i];
+
1441  std::string register_type = get_register_type_for_ba_block(block);
+
1442  std::string function_name = method_name(fmt::format("nrn_before_after_{}", i));
+
1443  printer->fmt_line("hoc_reg_ba(mech_type, {}, {});", function_name, register_type);
+
1444  }
+
1445 
+
1446  // register variables for hoc
+
1447  printer->add_line("hoc_register_var(hoc_scalar_double, hoc_vector_double, NULL);");
+
1448  printer->pop_block();
+
1449 }
+
1450 
+
1451 
+
1452 void CodegenCoreneuronCppVisitor::print_thread_memory_callbacks() {
+
1453  if (!info.thread_callback_register) {
+
1454  return;
+
1455  }
+
1456 
+
1457  // thread_mem_init callback
+
1458  printer->add_newline(2);
+
1459  printer->add_line("/** thread memory allocation callback */");
+
1460  printer->push_block("static void thread_mem_init(ThreadDatum* thread) ");
+
1461 
+
1462  if (info.vectorize && info.derivimplicit_used()) {
+
1463  printer->fmt_line("thread[dith{}()].pval = nullptr;", info.derivimplicit_list_num);
+
1464  }
+
1465  if (info.vectorize && (info.top_local_thread_size != 0)) {
+
1466  auto length = info.top_local_thread_size;
+
1467  auto allocation = fmt::format("(double*)mem_alloc({}, sizeof(double))", length);
+
1468  printer->fmt_line("thread[top_local_var_tid()].pval = {};", allocation);
+
1469  }
+
1470  if (info.thread_var_data_size != 0) {
+
1471  auto length = info.thread_var_data_size;
+
1472  auto thread_data = get_variable_name("thread_data");
+
1473  auto thread_data_in_use = get_variable_name("thread_data_in_use");
+
1474  auto allocation = fmt::format("(double*)mem_alloc({}, sizeof(double))", length);
+
1475  printer->fmt_push_block("if ({})", thread_data_in_use);
+
1476  printer->fmt_line("thread[thread_var_tid()].pval = {};", allocation);
+
1477  printer->chain_block("else");
+
1478  printer->fmt_line("thread[thread_var_tid()].pval = {};", thread_data);
+
1479  printer->fmt_line("{} = 1;", thread_data_in_use);
+
1480  printer->pop_block();
+
1481  }
+
1482  printer->pop_block();
+
1483  printer->add_newline(2);
+
1484 
+
1485 
+
1486  // thread_mem_cleanup callback
+
1487  printer->add_line("/** thread memory cleanup callback */");
+
1488  printer->push_block("static void thread_mem_cleanup(ThreadDatum* thread) ");
1489 
-
1490  // thread_mem_cleanup callback
-
1491  printer->add_line("/** thread memory cleanup callback */");
-
1492  printer->push_block("static void thread_mem_cleanup(ThreadDatum* thread) ");
-
1493 
-
1494  // clang-format off
-
1495  if (info.vectorize && info.derivimplicit_used()) {
-
1496  int n = info.derivimplicit_list_num;
-
1497  printer->fmt_line("free(thread[dith{}()].pval);", n);
-
1498  printer->fmt_line("nrn_destroy_newtonspace(static_cast<NewtonSpace*>(*newtonspace{}(thread)));", n);
-
1499  }
-
1500  // clang-format on
-
1501 
-
1502  if (info.top_local_thread_size != 0) {
-
1503  auto line = "free(thread[top_local_var_tid()].pval);";
-
1504  printer->add_line(line);
-
1505  }
-
1506  if (info.thread_var_data_size != 0) {
-
1507  auto thread_data = get_variable_name("thread_data");
-
1508  auto thread_data_in_use = get_variable_name("thread_data_in_use");
-
1509  printer->fmt_push_block("if (thread[thread_var_tid()].pval == {})", thread_data);
-
1510  printer->fmt_line("{} = 0;", thread_data_in_use);
-
1511  printer->chain_block("else");
-
1512  printer->add_line("free(thread[thread_var_tid()].pval);");
-
1513  printer->pop_block();
-
1514  }
-
1515  printer->pop_block();
-
1516 }
-
1517 
-
1518 
-
1519 void CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure(bool print_initializers) {
-
1520  auto const value_initialize = print_initializers ? "{}" : "";
-
1521  auto int_type = default_int_data_type();
-
1522  printer->add_newline(2);
-
1523  printer->add_line("/** all mechanism instance variables and global variables */");
-
1524  printer->fmt_push_block("struct {} ", instance_struct());
-
1525 
-
1526  for (auto const& [var, type]: info.neuron_global_variables) {
-
1527  auto const name = var->get_name();
-
1528  printer->fmt_line("{}* {}{};",
-
1529  type,
-
1530  name,
-
1531  print_initializers ? fmt::format("{{&coreneuron::{}}}", name)
-
1532  : std::string{});
-
1533  }
-
1534  for (auto& var: codegen_float_variables) {
-
1535  const auto& name = var->get_name();
-
1536  auto type = get_range_var_float_type(var);
-
1537  auto qualifier = is_constant_variable(name) ? "const " : "";
-
1538  printer->fmt_line("{}{}* {}{};", qualifier, type, name, value_initialize);
-
1539  }
-
1540  for (auto& var: codegen_int_variables) {
-
1541  const auto& name = var.symbol->get_name();
-
1542  if (var.is_index || var.is_integer) {
-
1543  auto qualifier = var.is_constant ? "const " : "";
-
1544  printer->fmt_line("{}{}* {}{};", qualifier, int_type, name, value_initialize);
-
1545  } else {
-
1546  auto qualifier = var.is_constant ? "const " : "";
-
1547  auto type = var.is_vdata ? "void*" : default_float_data_type();
-
1548  printer->fmt_line("{}{}* {}{};", qualifier, type, name, value_initialize);
-
1549  }
-
1550  }
-
1551 
-
1552  printer->fmt_line("{}* {}{};",
-
1553  global_struct(),
-
1554  naming::INST_GLOBAL_MEMBER,
-
1555  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
-
1556  : std::string{});
-
1557  printer->pop_block(";");
-
1558 }
-
1559 
-
1560 
-
1561 void CodegenCoreneuronCppVisitor::print_ion_var_structure() {
-
1562  if (!ion_variable_struct_required()) {
-
1563  return;
-
1564  }
-
1565  printer->add_newline(2);
-
1566  printer->add_line("/** ion write variables */");
-
1567  printer->push_block("struct IonCurVar");
-
1568 
-
1569  std::string float_type = default_float_data_type();
-
1570  std::vector<std::string> members;
-
1571 
-
1572  for (auto& ion: info.ions) {
-
1573  for (auto& var: ion.writes) {
-
1574  printer->fmt_line("{} {};", float_type, var);
-
1575  members.push_back(var);
-
1576  }
-
1577  }
-
1578  for (auto& var: info.currents) {
-
1579  if (!info.is_ion_variable(var)) {
-
1580  printer->fmt_line("{} {};", float_type, var);
-
1581  members.push_back(var);
-
1582  }
-
1583  }
-
1584 
-
1585  print_ion_var_constructor(members);
+
1490  // clang-format off
+
1491  if (info.vectorize && info.derivimplicit_used()) {
+
1492  int n = info.derivimplicit_list_num;
+
1493  printer->fmt_line("free(thread[dith{}()].pval);", n);
+
1494  printer->fmt_line("nrn_destroy_newtonspace(static_cast<NewtonSpace*>(*newtonspace{}(thread)));", n);
+
1495  }
+
1496  // clang-format on
+
1497 
+
1498  if (info.top_local_thread_size != 0) {
+
1499  auto line = "free(thread[top_local_var_tid()].pval);";
+
1500  printer->add_line(line);
+
1501  }
+
1502  if (info.thread_var_data_size != 0) {
+
1503  auto thread_data = get_variable_name("thread_data");
+
1504  auto thread_data_in_use = get_variable_name("thread_data_in_use");
+
1505  printer->fmt_push_block("if (thread[thread_var_tid()].pval == {})", thread_data);
+
1506  printer->fmt_line("{} = 0;", thread_data_in_use);
+
1507  printer->chain_block("else");
+
1508  printer->add_line("free(thread[thread_var_tid()].pval);");
+
1509  printer->pop_block();
+
1510  }
+
1511  printer->pop_block();
+
1512 }
+
1513 
+
1514 
+
1515 void CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure(bool print_initializers) {
+
1516  auto const value_initialize = print_initializers ? "{}" : "";
+
1517  auto int_type = default_int_data_type();
+
1518  printer->add_newline(2);
+
1519  printer->add_line("/** all mechanism instance variables and global variables */");
+
1520  printer->fmt_push_block("struct {} ", instance_struct());
+
1521 
+
1522  for (auto const& [var, type]: info.neuron_global_variables) {
+
1523  auto const name = var->get_name();
+
1524  printer->fmt_line("{}* {}{};",
+
1525  type,
+
1526  name,
+
1527  print_initializers ? fmt::format("{{&coreneuron::{}}}", name)
+
1528  : std::string{});
+
1529  }
+
1530  for (auto& var: codegen_float_variables) {
+
1531  const auto& name = var->get_name();
+
1532  auto type = get_range_var_float_type(var);
+
1533  auto qualifier = is_constant_variable(name) ? "const " : "";
+
1534  printer->fmt_line("{}{}* {}{};", qualifier, type, name, value_initialize);
+
1535  }
+
1536  for (auto& var: codegen_int_variables) {
+
1537  const auto& name = var.symbol->get_name();
+
1538  if (var.is_index || var.is_integer) {
+
1539  auto qualifier = var.is_constant ? "const " : "";
+
1540  printer->fmt_line("{}{}* {}{};", qualifier, int_type, name, value_initialize);
+
1541  } else {
+
1542  auto qualifier = var.is_constant ? "const " : "";
+
1543  auto type = var.is_vdata ? "void*" : default_float_data_type();
+
1544  printer->fmt_line("{}{}* {}{};", qualifier, type, name, value_initialize);
+
1545  }
+
1546  }
+
1547 
+
1548  printer->fmt_line("{}* {}{};",
+
1549  global_struct(),
+
1550  naming::INST_GLOBAL_MEMBER,
+
1551  print_initializers ? fmt::format("{{&{}}}", global_struct_instance())
+
1552  : std::string{});
+
1553  printer->pop_block(";");
+
1554 }
+
1555 
+
1556 
+
1557 void CodegenCoreneuronCppVisitor::print_ion_var_structure() {
+
1558  if (!ion_variable_struct_required()) {
+
1559  return;
+
1560  }
+
1561  printer->add_newline(2);
+
1562  printer->add_line("/** ion write variables */");
+
1563  printer->push_block("struct IonCurVar");
+
1564 
+
1565  std::string float_type = default_float_data_type();
+
1566  std::vector<std::string> members;
+
1567 
+
1568  for (auto& ion: info.ions) {
+
1569  for (auto& var: ion.writes) {
+
1570  printer->fmt_line("{} {};", float_type, var);
+
1571  members.push_back(var);
+
1572  }
+
1573  }
+
1574  for (auto& var: info.currents) {
+
1575  if (!info.is_ion_variable(var)) {
+
1576  printer->fmt_line("{} {};", float_type, var);
+
1577  members.push_back(var);
+
1578  }
+
1579  }
+
1580 
+
1581  print_ion_var_constructor(members);
+
1582 
+
1583  printer->pop_block(";");
+
1584 }
+
1585 
1586 
-
1587  printer->pop_block(";");
-
1588 }
-
1589 
-
1590 
-
1591 void CodegenCoreneuronCppVisitor::print_ion_var_constructor(
-
1592  const std::vector<std::string>& members) {
-
1593  // constructor
-
1594  printer->add_newline();
-
1595  printer->add_indent();
-
1596  printer->add_text("IonCurVar() : ");
-
1597  for (int i = 0; i < members.size(); i++) {
-
1598  printer->fmt_text("{}(0)", members[i]);
-
1599  if (i + 1 < members.size()) {
-
1600  printer->add_text(", ");
-
1601  }
-
1602  }
-
1603  printer->add_text(" {}");
-
1604  printer->add_newline();
-
1605 }
-
1606 
+
1587 void CodegenCoreneuronCppVisitor::print_ion_var_constructor(
+
1588  const std::vector<std::string>& members) {
+
1589  // constructor
+
1590  printer->add_newline();
+
1591  printer->add_indent();
+
1592  printer->add_text("IonCurVar() : ");
+
1593  for (int i = 0; i < members.size(); i++) {
+
1594  printer->fmt_text("{}(0)", members[i]);
+
1595  if (i + 1 < members.size()) {
+
1596  printer->add_text(", ");
+
1597  }
+
1598  }
+
1599  printer->add_text(" {}");
+
1600  printer->add_newline();
+
1601 }
+
1602 
+
1603 
+
1604 void CodegenCoreneuronCppVisitor::print_ion_variable() {
+
1605  printer->add_line("IonCurVar ionvar;");
+
1606 }
1607 
-
1608 void CodegenCoreneuronCppVisitor::print_ion_variable() {
-
1609  printer->add_line("IonCurVar ionvar;");
-
1610 }
-
1611 
+
1608 
+
1609 void CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation() {
+
1610  // nothing for cpu
+
1611 }
1612 
-
1613 void CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation() {
-
1614  // nothing for cpu
-
1615 }
-
1616 
-
1617 
-
1618 void CodegenCoreneuronCppVisitor::print_setup_range_variable() {
-
1619  auto type = float_data_type();
-
1620  printer->add_newline(2);
-
1621  printer->add_line("/** allocate and setup array for range variable */");
-
1622  printer->fmt_push_block("static inline {}* setup_range_variable(double* variable, int n)",
-
1623  type);
-
1624  printer->fmt_line("{0}* data = ({0}*) mem_alloc(n, sizeof({0}));", type);
-
1625  printer->push_block("for(size_t i = 0; i < n; i++)");
-
1626  printer->add_line("data[i] = variable[i];");
-
1627  printer->pop_block();
-
1628  printer->add_line("return data;");
-
1629  printer->pop_block();
-
1630 }
-
1631 
-
1632 
-
1633 /**
-
1634  * \details If floating point type like "float" is specified on command line then
-
1635  * we can't turn all variables to new type. This is because certain variables
-
1636  * are pointers to internal variables (e.g. ions). Hence, we check if given
-
1637  * variable can be safely converted to new type. If so, return new type.
-
1638  */
-
1639 std::string CodegenCoreneuronCppVisitor::get_range_var_float_type(const SymbolType& symbol) {
-
1640  // clang-format off
-
1641  auto with = NmodlType::read_ion_var
-
1642  | NmodlType::write_ion_var
-
1643  | NmodlType::pointer_var
-
1644  | NmodlType::bbcore_pointer_var
-
1645  | NmodlType::extern_neuron_variable;
-
1646  // clang-format on
-
1647  bool need_default_type = symbol->has_any_property(with);
-
1648  if (need_default_type) {
-
1649  return default_float_data_type();
-
1650  }
-
1651  return float_data_type();
-
1652 }
-
1653 
-
1654 
-
1655 void CodegenCoreneuronCppVisitor::print_instance_variable_setup() {
-
1656  if (range_variable_setup_required()) {
-
1657  print_setup_range_variable();
-
1658  }
-
1659 
-
1660  printer->add_newline();
-
1661  printer->add_line("// Allocate instance structure");
-
1662  printer->fmt_push_block("static void {}(NrnThread* nt, Memb_list* ml, int type)",
-
1663  method_name(naming::NRN_PRIVATE_CONSTRUCTOR_METHOD));
-
1664  printer->add_line("assert(!ml->instance);");
-
1665  printer->add_line("assert(!ml->global_variables);");
-
1666  printer->add_line("assert(ml->global_variables_size == 0);");
-
1667  printer->fmt_line("auto* const inst = new {}{{}};", instance_struct());
-
1668  printer->fmt_line("assert(inst->{} == &{});",
-
1669  naming::INST_GLOBAL_MEMBER,
-
1670  global_struct_instance());
-
1671  printer->add_line("ml->instance = inst;");
-
1672  printer->fmt_line("ml->global_variables = inst->{};", naming::INST_GLOBAL_MEMBER);
-
1673  printer->fmt_line("ml->global_variables_size = sizeof({});", global_struct());
-
1674  printer->pop_block();
-
1675  printer->add_newline();
-
1676 
-
1677  auto const cast_inst_and_assert_validity = [&]() {
-
1678  printer->fmt_line("auto* const inst = static_cast<{}*>(ml->instance);", instance_struct());
-
1679  printer->add_line("assert(inst);");
-
1680  printer->fmt_line("assert(inst->{});", naming::INST_GLOBAL_MEMBER);
-
1681  printer->fmt_line("assert(inst->{} == &{});",
-
1682  naming::INST_GLOBAL_MEMBER,
-
1683  global_struct_instance());
-
1684  printer->fmt_line("assert(inst->{} == ml->global_variables);", naming::INST_GLOBAL_MEMBER);
-
1685  printer->fmt_line("assert(ml->global_variables_size == sizeof({}));", global_struct());
-
1686  };
+
1613 
+
1614 void CodegenCoreneuronCppVisitor::print_setup_range_variable() {
+
1615  auto type = float_data_type();
+
1616  printer->add_newline(2);
+
1617  printer->add_line("/** allocate and setup array for range variable */");
+
1618  printer->fmt_push_block("static inline {}* setup_range_variable(double* variable, int n)",
+
1619  type);
+
1620  printer->fmt_line("{0}* data = ({0}*) mem_alloc(n, sizeof({0}));", type);
+
1621  printer->push_block("for(size_t i = 0; i < n; i++)");
+
1622  printer->add_line("data[i] = variable[i];");
+
1623  printer->pop_block();
+
1624  printer->add_line("return data;");
+
1625  printer->pop_block();
+
1626 }
+
1627 
+
1628 
+
1629 /**
+
1630  * \details If floating point type like "float" is specified on command line then
+
1631  * we can't turn all variables to new type. This is because certain variables
+
1632  * are pointers to internal variables (e.g. ions). Hence, we check if given
+
1633  * variable can be safely converted to new type. If so, return new type.
+
1634  */
+
1635 std::string CodegenCoreneuronCppVisitor::get_range_var_float_type(const SymbolType& symbol) {
+
1636  // clang-format off
+
1637  auto with = NmodlType::read_ion_var
+
1638  | NmodlType::write_ion_var
+
1639  | NmodlType::pointer_var
+
1640  | NmodlType::bbcore_pointer_var
+
1641  | NmodlType::extern_neuron_variable;
+
1642  // clang-format on
+
1643  bool need_default_type = symbol->has_any_property(with);
+
1644  if (need_default_type) {
+
1645  return default_float_data_type();
+
1646  }
+
1647  return float_data_type();
+
1648 }
+
1649 
+
1650 
+
1651 void CodegenCoreneuronCppVisitor::print_instance_variable_setup() {
+
1652  if (range_variable_setup_required()) {
+
1653  print_setup_range_variable();
+
1654  }
+
1655 
+
1656  printer->add_newline();
+
1657  printer->add_line("// Allocate instance structure");
+
1658  printer->fmt_push_block("static void {}(NrnThread* nt, Memb_list* ml, int type)",
+
1659  method_name(naming::NRN_PRIVATE_CONSTRUCTOR_METHOD));
+
1660  printer->add_line("assert(!ml->instance);");
+
1661  printer->add_line("assert(!ml->global_variables);");
+
1662  printer->add_line("assert(ml->global_variables_size == 0);");
+
1663  printer->fmt_line("auto* const inst = new {}{{}};", instance_struct());
+
1664  printer->fmt_line("assert(inst->{} == &{});",
+
1665  naming::INST_GLOBAL_MEMBER,
+
1666  global_struct_instance());
+
1667  printer->add_line("ml->instance = inst;");
+
1668  printer->fmt_line("ml->global_variables = inst->{};", naming::INST_GLOBAL_MEMBER);
+
1669  printer->fmt_line("ml->global_variables_size = sizeof({});", global_struct());
+
1670  printer->pop_block();
+
1671  printer->add_newline();
+
1672 
+
1673  auto const cast_inst_and_assert_validity = [&]() {
+
1674  printer->fmt_line("auto* const inst = static_cast<{}*>(ml->instance);", instance_struct());
+
1675  printer->add_line("assert(inst);");
+
1676  printer->fmt_line("assert(inst->{});", naming::INST_GLOBAL_MEMBER);
+
1677  printer->fmt_line("assert(inst->{} == &{});",
+
1678  naming::INST_GLOBAL_MEMBER,
+
1679  global_struct_instance());
+
1680  printer->fmt_line("assert(inst->{} == ml->global_variables);", naming::INST_GLOBAL_MEMBER);
+
1681  printer->fmt_line("assert(ml->global_variables_size == sizeof({}));", global_struct());
+
1682  };
+
1683 
+
1684  // Must come before print_instance_struct_copy_to_device and
+
1685  // print_instance_struct_delete_from_device
+
1686  print_instance_struct_transfer_routine_declarations();
1687 
-
1688  // Must come before print_instance_struct_copy_to_device and
-
1689  // print_instance_struct_delete_from_device
-
1690  print_instance_struct_transfer_routine_declarations();
-
1691 
-
1692  printer->add_line("// Deallocate the instance structure");
-
1693  printer->fmt_push_block("static void {}(NrnThread* nt, Memb_list* ml, int type)",
-
1694  method_name(naming::NRN_PRIVATE_DESTRUCTOR_METHOD));
-
1695  cast_inst_and_assert_validity();
-
1696 
-
1697  // delete random streams
-
1698  if (info.random_variables.size()) {
-
1699  printer->add_line("int pnodecount = ml->_nodecount_padded;");
-
1700  printer->add_line("int nodecount = ml->nodecount;");
-
1701  printer->add_line("Datum* indexes = ml->pdata;");
-
1702  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
1703  for (const auto& var: info.random_variables) {
-
1704  const auto& name = get_variable_name(var->get_name());
-
1705  printer->fmt_line("nrnran123_deletestream((nrnran123_State*){});", name);
-
1706  }
-
1707  printer->pop_block();
-
1708  }
-
1709  print_instance_struct_delete_from_device();
-
1710  printer->add_multi_line(R"CODE(
-
1711  delete inst;
-
1712  ml->instance = nullptr;
-
1713  ml->global_variables = nullptr;
-
1714  ml->global_variables_size = 0;
-
1715  )CODE");
-
1716  printer->pop_block();
-
1717  printer->add_newline();
-
1718 
-
1719 
-
1720  printer->add_line("/** initialize mechanism instance variables */");
-
1721  printer->push_block("static inline void setup_instance(NrnThread* nt, Memb_list* ml)");
-
1722  cast_inst_and_assert_validity();
+
1688  printer->add_line("// Deallocate the instance structure");
+
1689  printer->fmt_push_block("static void {}(NrnThread* nt, Memb_list* ml, int type)",
+
1690  method_name(naming::NRN_PRIVATE_DESTRUCTOR_METHOD));
+
1691  cast_inst_and_assert_validity();
+
1692 
+
1693  // delete random streams
+
1694  if (info.random_variables.size()) {
+
1695  printer->add_line("int pnodecount = ml->_nodecount_padded;");
+
1696  printer->add_line("int nodecount = ml->nodecount;");
+
1697  printer->add_line("Datum* indexes = ml->pdata;");
+
1698  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
1699  for (const auto& var: info.random_variables) {
+
1700  const auto& name = get_variable_name(var->get_name());
+
1701  printer->fmt_line("nrnran123_deletestream((nrnran123_State*){});", name);
+
1702  }
+
1703  printer->pop_block();
+
1704  }
+
1705  print_instance_struct_delete_from_device();
+
1706  printer->add_multi_line(R"CODE(
+
1707  delete inst;
+
1708  ml->instance = nullptr;
+
1709  ml->global_variables = nullptr;
+
1710  ml->global_variables_size = 0;
+
1711  )CODE");
+
1712  printer->pop_block();
+
1713  printer->add_newline();
+
1714 
+
1715 
+
1716  printer->add_line("/** initialize mechanism instance variables */");
+
1717  printer->push_block("static inline void setup_instance(NrnThread* nt, Memb_list* ml)");
+
1718  cast_inst_and_assert_validity();
+
1719 
+
1720  std::string stride;
+
1721  printer->add_line("int pnodecount = ml->_nodecount_padded;");
+
1722  stride = "*pnodecount";
1723 
-
1724  std::string stride;
-
1725  printer->add_line("int pnodecount = ml->_nodecount_padded;");
-
1726  stride = "*pnodecount";
+
1724  printer->add_line("Datum* indexes = ml->pdata;");
+
1725 
+
1726  auto const float_type = default_float_data_type();
1727 
-
1728  printer->add_line("Datum* indexes = ml->pdata;");
-
1729 
-
1730  auto const float_type = default_float_data_type();
-
1731 
-
1732  int id = 0;
-
1733  std::vector<std::string> ptr_members{naming::INST_GLOBAL_MEMBER};
-
1734  for (auto const& [var, type]: info.neuron_global_variables) {
-
1735  ptr_members.push_back(var->get_name());
-
1736  }
-
1737  ptr_members.reserve(ptr_members.size() + codegen_float_variables.size() +
-
1738  codegen_int_variables.size());
-
1739  for (auto& var: codegen_float_variables) {
-
1740  auto name = var->get_name();
-
1741  auto range_var_type = get_range_var_float_type(var);
-
1742  if (float_type == range_var_type) {
-
1743  auto const variable = fmt::format("ml->data+{}{}", id, stride);
-
1744  printer->fmt_line("inst->{} = {};", name, variable);
-
1745  } else {
-
1746  // TODO what MOD file exercises this?
-
1747  printer->fmt_line("inst->{} = setup_range_variable(ml->data+{}{}, pnodecount);",
-
1748  name,
-
1749  id,
-
1750  stride);
-
1751  }
-
1752  ptr_members.push_back(std::move(name));
-
1753  id += var->get_length();
-
1754  }
-
1755 
-
1756  for (auto& var: codegen_int_variables) {
-
1757  auto name = var.symbol->get_name();
-
1758  auto const variable = [&var]() {
-
1759  if (var.is_index || var.is_integer) {
-
1760  return "ml->pdata";
-
1761  } else if (var.is_vdata) {
-
1762  return "nt->_vdata";
-
1763  } else {
-
1764  return "nt->_data";
-
1765  }
-
1766  }();
-
1767  printer->fmt_line("inst->{} = {};", name, variable);
-
1768  ptr_members.push_back(std::move(name));
-
1769  }
-
1770  print_instance_struct_copy_to_device();
-
1771  printer->pop_block(); // setup_instance
-
1772  printer->add_newline();
+
1728  int id = 0;
+
1729  std::vector<std::string> ptr_members{naming::INST_GLOBAL_MEMBER};
+
1730  for (auto const& [var, type]: info.neuron_global_variables) {
+
1731  ptr_members.push_back(var->get_name());
+
1732  }
+
1733  ptr_members.reserve(ptr_members.size() + codegen_float_variables.size() +
+
1734  codegen_int_variables.size());
+
1735  for (auto& var: codegen_float_variables) {
+
1736  auto name = var->get_name();
+
1737  auto range_var_type = get_range_var_float_type(var);
+
1738  if (float_type == range_var_type) {
+
1739  auto const variable = fmt::format("ml->data+{}{}", id, stride);
+
1740  printer->fmt_line("inst->{} = {};", name, variable);
+
1741  } else {
+
1742  // TODO what MOD file exercises this?
+
1743  printer->fmt_line("inst->{} = setup_range_variable(ml->data+{}{}, pnodecount);",
+
1744  name,
+
1745  id,
+
1746  stride);
+
1747  }
+
1748  ptr_members.push_back(std::move(name));
+
1749  id += var->get_length();
+
1750  }
+
1751 
+
1752  for (auto& var: codegen_int_variables) {
+
1753  auto name = var.symbol->get_name();
+
1754  auto const variable = [&var]() {
+
1755  if (var.is_index || var.is_integer) {
+
1756  return "ml->pdata";
+
1757  } else if (var.is_vdata) {
+
1758  return "nt->_vdata";
+
1759  } else {
+
1760  return "nt->_data";
+
1761  }
+
1762  }();
+
1763  printer->fmt_line("inst->{} = {};", name, variable);
+
1764  ptr_members.push_back(std::move(name));
+
1765  }
+
1766  print_instance_struct_copy_to_device();
+
1767  printer->pop_block(); // setup_instance
+
1768  printer->add_newline();
+
1769 
+
1770  print_instance_struct_transfer_routines(ptr_members);
+
1771 }
+
1772 
1773 
-
1774  print_instance_struct_transfer_routines(ptr_members);
-
1775 }
-
1776 
-
1777 
-
1778 void CodegenCoreneuronCppVisitor::print_initial_block(const InitialBlock* node) {
-
1779  if (info.artificial_cell) {
-
1780  printer->add_line("double v = 0.0;");
-
1781  } else {
-
1782  printer->add_line("int node_id = node_index[id];");
-
1783  printer->add_line("double v = voltage[node_id];");
-
1784  print_v_unused();
+
1774 void CodegenCoreneuronCppVisitor::print_initial_block(const InitialBlock* node) {
+
1775  if (info.artificial_cell) {
+
1776  printer->add_line("double v = 0.0;");
+
1777  } else {
+
1778  printer->add_line("int node_id = node_index[id];");
+
1779  printer->add_line("double v = voltage[node_id];");
+
1780  print_v_unused();
+
1781  }
+
1782 
+
1783  if (ion_variable_struct_required()) {
+
1784  printer->add_line("IonCurVar ionvar;");
1785  }
1786 
-
1787  if (ion_variable_struct_required()) {
-
1788  printer->add_line("IonCurVar ionvar;");
-
1789  }
-
1790 
-
1791  // read ion statements
-
1792  auto read_statements = ion_read_statements(BlockType::Initial);
-
1793  for (auto& statement: read_statements) {
-
1794  printer->add_line(statement);
-
1795  }
-
1796 
-
1797  print_rename_state_vars();
-
1798 
-
1799  // initial block
-
1800  if (node != nullptr) {
-
1801  const auto& block = node->get_statement_block();
-
1802  print_statement_block(*block, false, false);
-
1803  }
-
1804 
-
1805  // write ion statements
-
1806  auto write_statements = ion_write_statements(BlockType::Initial);
-
1807  for (auto& statement: write_statements) {
-
1808  auto text = process_shadow_update_statement(statement, BlockType::Initial);
-
1809  printer->add_line(text);
-
1810  }
-
1811 }
-
1812 
-
1813 
-
1814 void CodegenCoreneuronCppVisitor::print_global_function_common_code(
-
1815  BlockType type,
-
1816  const std::string& function_name) {
-
1817  std::string method;
-
1818  if (function_name.empty()) {
-
1819  method = compute_method_name(type);
-
1820  } else {
-
1821  method = function_name;
-
1822  }
-
1823  auto args = "NrnThread* nt, Memb_list* ml, int type";
-
1824 
-
1825  // watch statement function doesn't have type argument
-
1826  if (type == BlockType::Watch) {
-
1827  args = "NrnThread* nt, Memb_list* ml";
-
1828  }
-
1829 
-
1830  print_global_method_annotation();
-
1831  printer->fmt_push_block("void {}({})", method, args);
-
1832  if (type != BlockType::Destructor && type != BlockType::Constructor) {
-
1833  // We do not (currently) support DESTRUCTOR and CONSTRUCTOR blocks
-
1834  // running anything on the GPU.
-
1835  print_kernel_data_present_annotation_block_begin();
-
1836  } else {
-
1837  /// TODO: Remove this when the code generation is propery done
-
1838  /// Related to https://github.com/BlueBrain/nmodl/issues/692
-
1839  printer->add_line("#ifndef CORENEURON_BUILD");
-
1840  }
-
1841  printer->add_multi_line(R"CODE(
-
1842  int nodecount = ml->nodecount;
-
1843  int pnodecount = ml->_nodecount_padded;
-
1844  const int* node_index = ml->nodeindices;
-
1845  double* data = ml->data;
-
1846  const double* voltage = nt->_actual_v;
-
1847  )CODE");
-
1848 
-
1849  if (type == BlockType::Equation) {
-
1850  printer->add_line("double* vec_rhs = nt->_actual_rhs;");
-
1851  printer->add_line("double* vec_d = nt->_actual_d;");
-
1852  print_rhs_d_shadow_variables();
-
1853  }
-
1854  printer->add_line("Datum* indexes = ml->pdata;");
-
1855  printer->add_line("ThreadDatum* thread = ml->_thread;");
-
1856 
-
1857  if (type == BlockType::Initial) {
-
1858  printer->add_newline();
-
1859  printer->add_line("setup_instance(nt, ml);");
-
1860  }
-
1861  printer->fmt_line("auto* const inst = static_cast<{}*>(ml->instance);", instance_struct());
-
1862  printer->add_newline(1);
-
1863 }
+
1787  // read ion statements
+
1788  auto read_statements = ion_read_statements(BlockType::Initial);
+
1789  for (auto& statement: read_statements) {
+
1790  printer->add_line(statement);
+
1791  }
+
1792 
+
1793  print_rename_state_vars();
+
1794 
+
1795  // initial block
+
1796  if (node != nullptr) {
+
1797  const auto& block = node->get_statement_block();
+
1798  print_statement_block(*block, false, false);
+
1799  }
+
1800 
+
1801  // write ion statements
+
1802  auto write_statements = ion_write_statements(BlockType::Initial);
+
1803  for (auto& statement: write_statements) {
+
1804  auto text = process_shadow_update_statement(statement, BlockType::Initial);
+
1805  printer->add_line(text);
+
1806  }
+
1807 }
+
1808 
+
1809 
+
1810 void CodegenCoreneuronCppVisitor::print_global_function_common_code(
+
1811  BlockType type,
+
1812  const std::string& function_name) {
+
1813  std::string method;
+
1814  if (function_name.empty()) {
+
1815  method = compute_method_name(type);
+
1816  } else {
+
1817  method = function_name;
+
1818  }
+
1819  auto args = "NrnThread* nt, Memb_list* ml, int type";
+
1820 
+
1821  // watch statement function doesn't have type argument
+
1822  if (type == BlockType::Watch) {
+
1823  args = "NrnThread* nt, Memb_list* ml";
+
1824  }
+
1825 
+
1826  print_global_method_annotation();
+
1827  printer->fmt_push_block("void {}({})", method, args);
+
1828  if (type != BlockType::Destructor && type != BlockType::Constructor) {
+
1829  // We do not (currently) support DESTRUCTOR and CONSTRUCTOR blocks
+
1830  // running anything on the GPU.
+
1831  print_kernel_data_present_annotation_block_begin();
+
1832  } else {
+
1833  /// TODO: Remove this when the code generation is propery done
+
1834  /// Related to https://github.com/BlueBrain/nmodl/issues/692
+
1835  printer->add_line("#ifndef CORENEURON_BUILD");
+
1836  }
+
1837  printer->add_multi_line(R"CODE(
+
1838  int nodecount = ml->nodecount;
+
1839  int pnodecount = ml->_nodecount_padded;
+
1840  const int* node_index = ml->nodeindices;
+
1841  double* data = ml->data;
+
1842  const double* voltage = nt->_actual_v;
+
1843  )CODE");
+
1844 
+
1845  if (type == BlockType::Equation) {
+
1846  printer->add_line("double* vec_rhs = nt->_actual_rhs;");
+
1847  printer->add_line("double* vec_d = nt->_actual_d;");
+
1848  print_rhs_d_shadow_variables();
+
1849  }
+
1850  printer->add_line("Datum* indexes = ml->pdata;");
+
1851  printer->add_line("ThreadDatum* thread = ml->_thread;");
+
1852 
+
1853  if (type == BlockType::Initial) {
+
1854  printer->add_newline();
+
1855  printer->add_line("setup_instance(nt, ml);");
+
1856  }
+
1857  printer->fmt_line("auto* const inst = static_cast<{}*>(ml->instance);", instance_struct());
+
1858  printer->add_newline(1);
+
1859 }
+
1860 
+
1861 void CodegenCoreneuronCppVisitor::print_nrn_init(bool skip_init_check) {
+
1862  printer->add_newline(2);
+
1863  printer->add_line("/** initialize channel */");
1864 
-
1865 void CodegenCoreneuronCppVisitor::print_nrn_init(bool skip_init_check) {
-
1866  printer->add_newline(2);
-
1867  printer->add_line("/** initialize channel */");
-
1868 
-
1869  print_global_function_common_code(BlockType::Initial);
-
1870  if (info.derivimplicit_used()) {
-
1871  printer->add_newline();
-
1872  int nequation = info.num_equations;
-
1873  int list_num = info.derivimplicit_list_num;
-
1874  // clang-format off
-
1875  printer->fmt_line("int& deriv_advance_flag = *deriv{}_advance(thread);", list_num);
-
1876  printer->add_line("deriv_advance_flag = 0;");
-
1877  print_deriv_advance_flag_transfer_to_device();
-
1878  printer->fmt_line("auto ns = newtonspace{}(thread);", list_num);
-
1879  printer->fmt_line("auto& th = thread[dith{}()];", list_num);
-
1880  printer->push_block("if (*ns == nullptr)");
-
1881  printer->fmt_line("int vec_size = 2*{}*pnodecount*sizeof(double);", nequation);
-
1882  printer->fmt_line("double* vec = makevector(vec_size);", nequation);
-
1883  printer->fmt_line("th.pval = vec;", list_num);
-
1884  printer->fmt_line("*ns = nrn_cons_newtonspace({}, pnodecount);", nequation);
-
1885  print_newtonspace_transfer_to_device();
-
1886  printer->pop_block();
-
1887  // clang-format on
-
1888  }
-
1889 
-
1890  // update global variable as those might be updated via python/hoc API
-
1891  // NOTE: CoreNEURON has enough information to do this on its own, which
-
1892  // would be neater.
-
1893  print_global_variable_device_update_annotation();
+
1865  print_global_function_common_code(BlockType::Initial);
+
1866  if (info.derivimplicit_used()) {
+
1867  printer->add_newline();
+
1868  int nequation = info.num_equations;
+
1869  int list_num = info.derivimplicit_list_num;
+
1870  // clang-format off
+
1871  printer->fmt_line("int& deriv_advance_flag = *deriv{}_advance(thread);", list_num);
+
1872  printer->add_line("deriv_advance_flag = 0;");
+
1873  print_deriv_advance_flag_transfer_to_device();
+
1874  printer->fmt_line("auto ns = newtonspace{}(thread);", list_num);
+
1875  printer->fmt_line("auto& th = thread[dith{}()];", list_num);
+
1876  printer->push_block("if (*ns == nullptr)");
+
1877  printer->fmt_line("int vec_size = 2*{}*pnodecount*sizeof(double);", nequation);
+
1878  printer->fmt_line("double* vec = makevector(vec_size);", nequation);
+
1879  printer->fmt_line("th.pval = vec;", list_num);
+
1880  printer->fmt_line("*ns = nrn_cons_newtonspace({}, pnodecount);", nequation);
+
1881  print_newtonspace_transfer_to_device();
+
1882  printer->pop_block();
+
1883  // clang-format on
+
1884  }
+
1885 
+
1886  // update global variable as those might be updated via python/hoc API
+
1887  // NOTE: CoreNEURON has enough information to do this on its own, which
+
1888  // would be neater.
+
1889  print_global_variable_device_update_annotation();
+
1890 
+
1891  if (skip_init_check) {
+
1892  printer->push_block("if (_nrn_skip_initmodel == 0)");
+
1893  }
1894 
-
1895  if (skip_init_check) {
-
1896  printer->push_block("if (_nrn_skip_initmodel == 0)");
-
1897  }
-
1898 
-
1899  if (!info.changed_dt.empty()) {
-
1900  printer->fmt_line("double _save_prev_dt = {};",
-
1901  get_variable_name(naming::NTHREAD_DT_VARIABLE));
-
1902  printer->fmt_line("{} = {};",
-
1903  get_variable_name(naming::NTHREAD_DT_VARIABLE),
-
1904  info.changed_dt);
-
1905  print_dt_update_to_device();
-
1906  }
-
1907 
-
1908  print_channel_iteration_block_parallel_hint(BlockType::Initial, info.initial_node);
-
1909  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
1895  if (!info.changed_dt.empty()) {
+
1896  printer->fmt_line("double _save_prev_dt = {};",
+
1897  get_variable_name(naming::NTHREAD_DT_VARIABLE));
+
1898  printer->fmt_line("{} = {};",
+
1899  get_variable_name(naming::NTHREAD_DT_VARIABLE),
+
1900  info.changed_dt);
+
1901  print_dt_update_to_device();
+
1902  }
+
1903 
+
1904  print_channel_iteration_block_parallel_hint(BlockType::Initial, info.initial_node);
+
1905  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
1906 
+
1907  if (info.net_receive_node != nullptr) {
+
1908  printer->fmt_line("{} = -1e20;", get_variable_name("tsave"));
+
1909  }
1910 
-
1911  if (info.net_receive_node != nullptr) {
-
1912  printer->fmt_line("{} = -1e20;", get_variable_name("tsave"));
-
1913  }
-
1914 
-
1915  print_initial_block(info.initial_node);
-
1916  printer->pop_block();
-
1917 
-
1918  if (!info.changed_dt.empty()) {
-
1919  printer->fmt_line("{} = _save_prev_dt;", get_variable_name(naming::NTHREAD_DT_VARIABLE));
-
1920  print_dt_update_to_device();
-
1921  }
-
1922 
-
1923  printer->pop_block();
-
1924 
-
1925  if (info.derivimplicit_used()) {
-
1926  printer->add_line("deriv_advance_flag = 1;");
-
1927  print_deriv_advance_flag_transfer_to_device();
+
1911  print_initial_block(info.initial_node);
+
1912  printer->pop_block();
+
1913 
+
1914  if (!info.changed_dt.empty()) {
+
1915  printer->fmt_line("{} = _save_prev_dt;", get_variable_name(naming::NTHREAD_DT_VARIABLE));
+
1916  print_dt_update_to_device();
+
1917  }
+
1918 
+
1919  printer->pop_block();
+
1920 
+
1921  if (info.derivimplicit_used()) {
+
1922  printer->add_line("deriv_advance_flag = 1;");
+
1923  print_deriv_advance_flag_transfer_to_device();
+
1924  }
+
1925 
+
1926  if (info.net_send_used && !info.artificial_cell) {
+
1927  print_send_event_move();
1928  }
1929 
-
1930  if (info.net_send_used && !info.artificial_cell) {
-
1931  print_send_event_move();
-
1932  }
-
1933 
-
1934  print_kernel_data_present_annotation_block_end();
-
1935  if (skip_init_check) {
-
1936  printer->pop_block();
-
1937  }
-
1938 }
-
1939 
-
1940 void CodegenCoreneuronCppVisitor::print_before_after_block(const ast::Block* node,
-
1941  size_t block_id) {
-
1942  std::string ba_type;
-
1943  std::shared_ptr<ast::BABlock> ba_block;
-
1944 
-
1945  if (node->is_before_block()) {
-
1946  ba_block = dynamic_cast<const ast::BeforeBlock*>(node)->get_bablock();
-
1947  ba_type = "BEFORE";
-
1948  } else {
-
1949  ba_block = dynamic_cast<const ast::AfterBlock*>(node)->get_bablock();
-
1950  ba_type = "AFTER";
-
1951  }
-
1952 
-
1953  std::string ba_block_type = ba_block->get_type()->eval();
-
1954 
-
1955  /// name of the before/after function
-
1956  std::string function_name = method_name(fmt::format("nrn_before_after_{}", block_id));
-
1957 
-
1958  /// print common function code like init/state/current
-
1959  printer->add_newline(2);
-
1960  printer->fmt_line("/** {} of block type {} # {} */", ba_type, ba_block_type, block_id);
-
1961  print_global_function_common_code(BlockType::BeforeAfter, function_name);
-
1962 
-
1963  print_channel_iteration_block_parallel_hint(BlockType::BeforeAfter, node);
-
1964  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
1930  print_kernel_data_present_annotation_block_end();
+
1931  if (skip_init_check) {
+
1932  printer->pop_block();
+
1933  }
+
1934 }
+
1935 
+
1936 void CodegenCoreneuronCppVisitor::print_before_after_block(const ast::Block* node,
+
1937  size_t block_id) {
+
1938  std::string ba_type;
+
1939  std::shared_ptr<ast::BABlock> ba_block;
+
1940 
+
1941  if (node->is_before_block()) {
+
1942  ba_block = dynamic_cast<const ast::BeforeBlock*>(node)->get_bablock();
+
1943  ba_type = "BEFORE";
+
1944  } else {
+
1945  ba_block = dynamic_cast<const ast::AfterBlock*>(node)->get_bablock();
+
1946  ba_type = "AFTER";
+
1947  }
+
1948 
+
1949  std::string ba_block_type = ba_block->get_type()->eval();
+
1950 
+
1951  /// name of the before/after function
+
1952  std::string function_name = method_name(fmt::format("nrn_before_after_{}", block_id));
+
1953 
+
1954  /// print common function code like init/state/current
+
1955  printer->add_newline(2);
+
1956  printer->fmt_line("/** {} of block type {} # {} */", ba_type, ba_block_type, block_id);
+
1957  print_global_function_common_code(BlockType::BeforeAfter, function_name);
+
1958 
+
1959  print_channel_iteration_block_parallel_hint(BlockType::BeforeAfter, node);
+
1960  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
1961 
+
1962  printer->add_line("int node_id = node_index[id];");
+
1963  printer->add_line("double v = voltage[node_id];");
+
1964  print_v_unused();
1965 
-
1966  printer->add_line("int node_id = node_index[id];");
-
1967  printer->add_line("double v = voltage[node_id];");
-
1968  print_v_unused();
-
1969 
-
1970  // read ion statements
-
1971  const auto& read_statements = ion_read_statements(BlockType::Equation);
-
1972  for (auto& statement: read_statements) {
-
1973  printer->add_line(statement);
-
1974  }
-
1975 
-
1976  /// print main body
-
1977  printer->add_indent();
-
1978  print_statement_block(*ba_block->get_statement_block());
-
1979  printer->add_newline();
-
1980 
-
1981  // write ion statements
-
1982  const auto& write_statements = ion_write_statements(BlockType::Equation);
-
1983  for (auto& statement: write_statements) {
-
1984  auto text = process_shadow_update_statement(statement, BlockType::Equation);
-
1985  printer->add_line(text);
-
1986  }
-
1987 
-
1988  /// loop end including data annotation block
-
1989  printer->pop_block();
-
1990  printer->pop_block();
-
1991  print_kernel_data_present_annotation_block_end();
-
1992 }
-
1993 
-
1994 void CodegenCoreneuronCppVisitor::print_nrn_constructor() {
-
1995  printer->add_newline(2);
-
1996  print_global_function_common_code(BlockType::Constructor);
-
1997  if (info.constructor_node != nullptr) {
-
1998  const auto& block = info.constructor_node->get_statement_block();
-
1999  print_statement_block(*block, false, false);
-
2000  }
-
2001  printer->add_line("#endif");
-
2002  printer->pop_block();
-
2003 }
-
2004 
-
2005 
-
2006 void CodegenCoreneuronCppVisitor::print_nrn_destructor() {
-
2007  printer->add_newline(2);
-
2008  print_global_function_common_code(BlockType::Destructor);
-
2009  if (info.destructor_node != nullptr) {
-
2010  const auto& block = info.destructor_node->get_statement_block();
-
2011  print_statement_block(*block, false, false);
-
2012  }
-
2013  printer->add_line("#endif");
-
2014  printer->pop_block();
-
2015 }
-
2016 
-
2017 
-
2018 void CodegenCoreneuronCppVisitor::print_nrn_alloc() {
-
2019  printer->add_newline(2);
-
2020  auto method = method_name(naming::NRN_ALLOC_METHOD);
-
2021  printer->fmt_push_block("static void {}(double* data, Datum* indexes, int type)", method);
-
2022  printer->add_line("// do nothing");
-
2023  printer->pop_block();
-
2024 }
-
2025 
-
2026 /**
-
2027  * \todo Number of watch could be more than number of statements
-
2028  * according to grammar. Check if this is correctly handled in neuron
-
2029  * and coreneuron.
-
2030  */
-
2031 void CodegenCoreneuronCppVisitor::print_watch_activate() {
-
2032  if (info.watch_statements.empty()) {
-
2033  return;
-
2034  }
-
2035 
-
2036  printer->add_newline(2);
-
2037  auto inst = fmt::format("{}* inst", instance_struct());
-
2038 
-
2039  printer->fmt_push_block(
-
2040  "static void nrn_watch_activate({}, int id, int pnodecount, int watch_id, "
-
2041  "double v, bool &watch_remove)",
-
2042  inst);
-
2043 
-
2044  // initialize all variables only during first watch statement
-
2045  printer->push_block("if (watch_remove == false)");
-
2046  for (int i = 0; i < info.watch_count; i++) {
-
2047  auto name = get_variable_name(fmt::format("watch{}", i + 1));
-
2048  printer->fmt_line("{} = 0;", name);
-
2049  }
-
2050  printer->add_line("watch_remove = true;");
-
2051  printer->pop_block();
-
2052 
-
2053  /**
-
2054  * \todo Similar to neuron/coreneuron we are using
-
2055  * first watch and ignoring rest.
-
2056  */
-
2057  for (int i = 0; i < info.watch_statements.size(); i++) {
-
2058  auto statement = info.watch_statements[i];
-
2059  printer->fmt_push_block("if (watch_id == {})", i);
-
2060 
-
2061  auto varname = get_variable_name(fmt::format("watch{}", i + 1));
-
2062  printer->add_indent();
-
2063  printer->fmt_text("{} = 2 + (", varname);
-
2064  auto watch = statement->get_statements().front();
-
2065  watch->get_expression()->visit_children(*this);
-
2066  printer->add_text(");");
-
2067  printer->add_newline();
-
2068 
-
2069  printer->pop_block();
-
2070  }
-
2071  printer->pop_block();
-
2072 }
-
2073 
-
2074 
-
2075 /**
-
2076  * \todo Similar to print_watch_activate, we are using only
-
2077  * first watch. need to verify with neuron/coreneuron about rest.
-
2078  */
-
2079 void CodegenCoreneuronCppVisitor::print_watch_check() {
-
2080  if (info.watch_statements.empty()) {
-
2081  return;
-
2082  }
+
1966  // read ion statements
+
1967  const auto& read_statements = ion_read_statements(BlockType::Equation);
+
1968  for (auto& statement: read_statements) {
+
1969  printer->add_line(statement);
+
1970  }
+
1971 
+
1972  /// print main body
+
1973  printer->add_indent();
+
1974  print_statement_block(*ba_block->get_statement_block());
+
1975  printer->add_newline();
+
1976 
+
1977  // write ion statements
+
1978  const auto& write_statements = ion_write_statements(BlockType::Equation);
+
1979  for (auto& statement: write_statements) {
+
1980  auto text = process_shadow_update_statement(statement, BlockType::Equation);
+
1981  printer->add_line(text);
+
1982  }
+
1983 
+
1984  /// loop end including data annotation block
+
1985  printer->pop_block();
+
1986  printer->pop_block();
+
1987  print_kernel_data_present_annotation_block_end();
+
1988 }
+
1989 
+
1990 void CodegenCoreneuronCppVisitor::print_nrn_constructor() {
+
1991  printer->add_newline(2);
+
1992  print_global_function_common_code(BlockType::Constructor);
+
1993  if (info.constructor_node != nullptr) {
+
1994  const auto& block = info.constructor_node->get_statement_block();
+
1995  print_statement_block(*block, false, false);
+
1996  }
+
1997  printer->add_line("#endif");
+
1998  printer->pop_block();
+
1999 }
+
2000 
+
2001 
+
2002 void CodegenCoreneuronCppVisitor::print_nrn_destructor() {
+
2003  printer->add_newline(2);
+
2004  print_global_function_common_code(BlockType::Destructor);
+
2005  if (info.destructor_node != nullptr) {
+
2006  const auto& block = info.destructor_node->get_statement_block();
+
2007  print_statement_block(*block, false, false);
+
2008  }
+
2009  printer->add_line("#endif");
+
2010  printer->pop_block();
+
2011 }
+
2012 
+
2013 
+
2014 void CodegenCoreneuronCppVisitor::print_nrn_alloc() {
+
2015  printer->add_newline(2);
+
2016  auto method = method_name(naming::NRN_ALLOC_METHOD);
+
2017  printer->fmt_push_block("static void {}(double* data, Datum* indexes, int type)", method);
+
2018  printer->add_line("// do nothing");
+
2019  printer->pop_block();
+
2020 }
+
2021 
+
2022 /**
+
2023  * \todo Number of watch could be more than number of statements
+
2024  * according to grammar. Check if this is correctly handled in neuron
+
2025  * and coreneuron.
+
2026  */
+
2027 void CodegenCoreneuronCppVisitor::print_watch_activate() {
+
2028  if (info.watch_statements.empty()) {
+
2029  return;
+
2030  }
+
2031 
+
2032  printer->add_newline(2);
+
2033  auto inst = fmt::format("{}* inst", instance_struct());
+
2034 
+
2035  printer->fmt_push_block(
+
2036  "static void nrn_watch_activate({}, int id, int pnodecount, int watch_id, "
+
2037  "double v, bool &watch_remove)",
+
2038  inst);
+
2039 
+
2040  // initialize all variables only during first watch statement
+
2041  printer->push_block("if (watch_remove == false)");
+
2042  for (int i = 0; i < info.watch_count; i++) {
+
2043  auto name = get_variable_name(fmt::format("watch{}", i + 1));
+
2044  printer->fmt_line("{} = 0;", name);
+
2045  }
+
2046  printer->add_line("watch_remove = true;");
+
2047  printer->pop_block();
+
2048 
+
2049  /**
+
2050  * \todo Similar to neuron/coreneuron we are using
+
2051  * first watch and ignoring rest.
+
2052  */
+
2053  for (int i = 0; i < info.watch_statements.size(); i++) {
+
2054  auto statement = info.watch_statements[i];
+
2055  printer->fmt_push_block("if (watch_id == {})", i);
+
2056 
+
2057  auto varname = get_variable_name(fmt::format("watch{}", i + 1));
+
2058  printer->add_indent();
+
2059  printer->fmt_text("{} = 2 + (", varname);
+
2060  auto watch = statement->get_statements().front();
+
2061  watch->get_expression()->visit_children(*this);
+
2062  printer->add_text(");");
+
2063  printer->add_newline();
+
2064 
+
2065  printer->pop_block();
+
2066  }
+
2067  printer->pop_block();
+
2068 }
+
2069 
+
2070 
+
2071 /**
+
2072  * \todo Similar to print_watch_activate, we are using only
+
2073  * first watch. need to verify with neuron/coreneuron about rest.
+
2074  */
+
2075 void CodegenCoreneuronCppVisitor::print_watch_check() {
+
2076  if (info.watch_statements.empty()) {
+
2077  return;
+
2078  }
+
2079 
+
2080  printer->add_newline(2);
+
2081  printer->add_line("/** routine to check watch activation */");
+
2082  print_global_function_common_code(BlockType::Watch);
2083 
-
2084  printer->add_newline(2);
-
2085  printer->add_line("/** routine to check watch activation */");
-
2086  print_global_function_common_code(BlockType::Watch);
-
2087 
-
2088  // WATCH statements appears in NET_RECEIVE block and while printing
-
2089  // net_receive function we already check if it contains any MUTEX/PROTECT
-
2090  // constructs. As WATCH is not a top level block but list of statements,
-
2091  // we don't need to have ivdep pragma related check
-
2092  print_channel_iteration_block_parallel_hint(BlockType::Watch, nullptr);
-
2093 
-
2094  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
2095 
-
2096  if (info.is_voltage_used_by_watch_statements()) {
-
2097  printer->add_line("int node_id = node_index[id];");
-
2098  printer->add_line("double v = voltage[node_id];");
-
2099  print_v_unused();
-
2100  }
-
2101 
-
2102  // flat to make sure only one WATCH statement can be triggered at a time
-
2103  printer->add_line("bool watch_untriggered = true;");
-
2104 
-
2105  for (int i = 0; i < info.watch_statements.size(); i++) {
-
2106  auto statement = info.watch_statements[i];
-
2107  const auto& watch = statement->get_statements().front();
-
2108  const auto& varname = get_variable_name(fmt::format("watch{}", i + 1));
-
2109 
-
2110  // start block 1
-
2111  printer->fmt_push_block("if ({}&2 && watch_untriggered)", varname);
-
2112 
-
2113  // start block 2
-
2114  printer->add_indent();
-
2115  printer->add_text("if (");
-
2116  watch->get_expression()->accept(*this);
-
2117  printer->add_text(") {");
-
2118  printer->add_newline();
-
2119  printer->increase_indent();
-
2120 
-
2121  // start block 3
-
2122  printer->fmt_push_block("if (({}&1) == 0)", varname);
-
2123 
-
2124  printer->add_line("watch_untriggered = false;");
-
2125 
-
2126  const auto& tqitem = get_variable_name("tqitem");
-
2127  const auto& point_process = get_variable_name("point_process");
-
2128  printer->add_indent();
-
2129  printer->add_text("net_send_buffering(");
-
2130  const auto& t = get_variable_name("t");
-
2131  printer->fmt_text("nt, ml->_net_send_buffer, 0, {}, -1, {}, {}+0.0, ",
-
2132  tqitem,
-
2133  point_process,
-
2134  t);
-
2135  watch->get_value()->accept(*this);
-
2136  printer->add_text(");");
-
2137  printer->add_newline();
-
2138  printer->pop_block();
-
2139 
-
2140  printer->add_line(varname, " = 3;");
-
2141  // end block 3
-
2142 
-
2143  // start block 3
-
2144  printer->decrease_indent();
-
2145  printer->push_block("} else");
-
2146  printer->add_line(varname, " = 2;");
-
2147  printer->pop_block();
-
2148  // end block 3
+
2084  // WATCH statements appears in NET_RECEIVE block and while printing
+
2085  // net_receive function we already check if it contains any MUTEX/PROTECT
+
2086  // constructs. As WATCH is not a top level block but list of statements,
+
2087  // we don't need to have ivdep pragma related check
+
2088  print_channel_iteration_block_parallel_hint(BlockType::Watch, nullptr);
+
2089 
+
2090  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
2091 
+
2092  if (info.is_voltage_used_by_watch_statements()) {
+
2093  printer->add_line("int node_id = node_index[id];");
+
2094  printer->add_line("double v = voltage[node_id];");
+
2095  print_v_unused();
+
2096  }
+
2097 
+
2098  // flat to make sure only one WATCH statement can be triggered at a time
+
2099  printer->add_line("bool watch_untriggered = true;");
+
2100 
+
2101  for (int i = 0; i < info.watch_statements.size(); i++) {
+
2102  auto statement = info.watch_statements[i];
+
2103  const auto& watch = statement->get_statements().front();
+
2104  const auto& varname = get_variable_name(fmt::format("watch{}", i + 1));
+
2105 
+
2106  // start block 1
+
2107  printer->fmt_push_block("if ({}&2 && watch_untriggered)", varname);
+
2108 
+
2109  // start block 2
+
2110  printer->add_indent();
+
2111  printer->add_text("if (");
+
2112  watch->get_expression()->accept(*this);
+
2113  printer->add_text(") {");
+
2114  printer->add_newline();
+
2115  printer->increase_indent();
+
2116 
+
2117  // start block 3
+
2118  printer->fmt_push_block("if (({}&1) == 0)", varname);
+
2119 
+
2120  printer->add_line("watch_untriggered = false;");
+
2121 
+
2122  const auto& tqitem = get_variable_name("tqitem");
+
2123  const auto& point_process = get_variable_name("point_process");
+
2124  printer->add_indent();
+
2125  printer->add_text("net_send_buffering(");
+
2126  const auto& t = get_variable_name("t");
+
2127  printer->fmt_text("nt, ml->_net_send_buffer, 0, {}, -1, {}, {}+0.0, ",
+
2128  tqitem,
+
2129  point_process,
+
2130  t);
+
2131  watch->get_value()->accept(*this);
+
2132  printer->add_text(");");
+
2133  printer->add_newline();
+
2134  printer->pop_block();
+
2135 
+
2136  printer->add_line(varname, " = 3;");
+
2137  // end block 3
+
2138 
+
2139  // start block 3
+
2140  printer->decrease_indent();
+
2141  printer->push_block("} else");
+
2142  printer->add_line(varname, " = 2;");
+
2143  printer->pop_block();
+
2144  // end block 3
+
2145 
+
2146  printer->pop_block();
+
2147  // end block 1
+
2148  }
2149 
-
2150  printer->pop_block();
-
2151  // end block 1
-
2152  }
-
2153 
-
2154  printer->pop_block();
-
2155  print_send_event_move();
-
2156  print_kernel_data_present_annotation_block_end();
-
2157  printer->pop_block();
-
2158 }
-
2159 
-
2160 
-
2161 void CodegenCoreneuronCppVisitor::print_net_receive_common_code(const Block& node,
-
2162  bool need_mech_inst) {
-
2163  printer->add_multi_line(R"CODE(
-
2164  int tid = pnt->_tid;
-
2165  int id = pnt->_i_instance;
-
2166  double v = 0;
-
2167  )CODE");
-
2168 
-
2169  if (info.artificial_cell || node.is_initial_block()) {
-
2170  printer->add_line("NrnThread* nt = nrn_threads + tid;");
-
2171  printer->add_line("Memb_list* ml = nt->_ml_list[pnt->_type];");
-
2172  }
-
2173  if (node.is_initial_block()) {
-
2174  print_kernel_data_present_annotation_block_begin();
-
2175  }
-
2176 
-
2177  printer->add_multi_line(R"CODE(
-
2178  int nodecount = ml->nodecount;
-
2179  int pnodecount = ml->_nodecount_padded;
-
2180  double* data = ml->data;
-
2181  double* weights = nt->weights;
-
2182  Datum* indexes = ml->pdata;
-
2183  ThreadDatum* thread = ml->_thread;
-
2184  )CODE");
-
2185  if (need_mech_inst) {
-
2186  printer->fmt_line("auto* const inst = static_cast<{0}*>(ml->instance);", instance_struct());
+
2150  printer->pop_block();
+
2151  print_send_event_move();
+
2152  print_kernel_data_present_annotation_block_end();
+
2153  printer->pop_block();
+
2154 }
+
2155 
+
2156 
+
2157 void CodegenCoreneuronCppVisitor::print_net_receive_common_code(const Block& node,
+
2158  bool need_mech_inst) {
+
2159  printer->add_multi_line(R"CODE(
+
2160  int tid = pnt->_tid;
+
2161  int id = pnt->_i_instance;
+
2162  double v = 0;
+
2163  )CODE");
+
2164 
+
2165  if (info.artificial_cell || node.is_initial_block()) {
+
2166  printer->add_line("NrnThread* nt = nrn_threads + tid;");
+
2167  printer->add_line("Memb_list* ml = nt->_ml_list[pnt->_type];");
+
2168  }
+
2169  if (node.is_initial_block()) {
+
2170  print_kernel_data_present_annotation_block_begin();
+
2171  }
+
2172 
+
2173  printer->add_multi_line(R"CODE(
+
2174  int nodecount = ml->nodecount;
+
2175  int pnodecount = ml->_nodecount_padded;
+
2176  double* data = ml->data;
+
2177  double* weights = nt->weights;
+
2178  Datum* indexes = ml->pdata;
+
2179  ThreadDatum* thread = ml->_thread;
+
2180  )CODE");
+
2181  if (need_mech_inst) {
+
2182  printer->fmt_line("auto* const inst = static_cast<{0}*>(ml->instance);", instance_struct());
+
2183  }
+
2184 
+
2185  if (node.is_initial_block()) {
+
2186  print_net_init_acc_serial_annotation_block_begin();
2187  }
2188 
-
2189  if (node.is_initial_block()) {
-
2190  print_net_init_acc_serial_annotation_block_begin();
-
2191  }
-
2192 
-
2193  // rename variables but need to see if they are actually used
-
2194  auto parameters = info.net_receive_node->get_parameters();
-
2195  if (!parameters.empty()) {
-
2196  int i = 0;
-
2197  printer->add_newline();
-
2198  for (auto& parameter: parameters) {
-
2199  auto name = parameter->get_node_name();
-
2200  bool var_used = VarUsageVisitor().variable_used(node, "(*" + name + ")");
-
2201  if (var_used) {
-
2202  printer->fmt_line("double* {} = weights + weight_index + {};", name, i);
-
2203  RenameVisitor vr(name, "*" + name);
-
2204  node.visit_children(vr);
-
2205  }
-
2206  i++;
-
2207  }
-
2208  }
-
2209 }
-
2210 
-
2211 
-
2212 void CodegenCoreneuronCppVisitor::print_net_send_call(const FunctionCall& node) {
-
2213  auto const& arguments = node.get_arguments();
-
2214  const auto& tqitem = get_variable_name("tqitem");
-
2215  std::string weight_index = "weight_index";
-
2216  std::string pnt = "pnt";
-
2217 
-
2218  // for functions not generated from NET_RECEIVE blocks (i.e. top level INITIAL block)
-
2219  // the weight_index argument is 0.
-
2220  if (!printing_net_receive && !printing_net_init) {
-
2221  weight_index = "0";
-
2222  auto var = get_variable_name("point_process");
-
2223  if (info.artificial_cell) {
-
2224  pnt = "(Point_process*)" + var;
-
2225  }
-
2226  }
-
2227 
-
2228  // artificial cells don't use spike buffering
-
2229  // clang-format off
-
2230  if (info.artificial_cell) {
-
2231  printer->fmt_text("artcell_net_send(&{}, {}, {}, nt->_t+", tqitem, weight_index, pnt);
-
2232  } else {
-
2233  const auto& point_process = get_variable_name("point_process");
-
2234  const auto& t = get_variable_name("t");
-
2235  printer->add_text("net_send_buffering(");
-
2236  printer->fmt_text("nt, ml->_net_send_buffer, 0, {}, {}, {}, {}+", tqitem, weight_index, point_process, t);
-
2237  }
-
2238  // clang-format off
-
2239  print_vector_elements(arguments, ", ");
-
2240  printer->add_text(')');
-
2241 }
-
2242 
-
2243 
-
2244 void CodegenCoreneuronCppVisitor::print_net_move_call(const FunctionCall& node) {
-
2245  if (!printing_net_receive && !printing_net_init) {
-
2246  throw std::runtime_error("Error : net_move only allowed in NET_RECEIVE block");
-
2247  }
-
2248 
-
2249  auto const& arguments = node.get_arguments();
-
2250  const auto& tqitem = get_variable_name("tqitem");
-
2251  std::string weight_index = "-1";
-
2252  std::string pnt = "pnt";
-
2253 
-
2254  // artificial cells don't use spike buffering
-
2255  // clang-format off
-
2256  if (info.artificial_cell) {
-
2257  printer->fmt_text("artcell_net_move(&{}, {}, ", tqitem, pnt);
-
2258  print_vector_elements(arguments, ", ");
-
2259  printer->add_text(")");
-
2260  } else {
-
2261  const auto& point_process = get_variable_name("point_process");
-
2262  printer->add_text("net_send_buffering(");
-
2263  printer->fmt_text("nt, ml->_net_send_buffer, 2, {}, {}, {}, ", tqitem, weight_index, point_process);
-
2264  print_vector_elements(arguments, ", ");
-
2265  printer->add_text(", 0.0");
-
2266  printer->add_text(")");
-
2267  }
-
2268 }
-
2269 
-
2270 
-
2271 void CodegenCoreneuronCppVisitor::print_net_event_call(const FunctionCall& node) {
-
2272  const auto& arguments = node.get_arguments();
-
2273  if (info.artificial_cell) {
-
2274  printer->add_text("net_event(pnt, ");
-
2275  print_vector_elements(arguments, ", ");
-
2276  } else {
-
2277  const auto& point_process = get_variable_name("point_process");
-
2278  printer->add_text("net_send_buffering(");
-
2279  printer->fmt_text("nt, ml->_net_send_buffer, 1, -1, -1, {}, ", point_process);
-
2280  print_vector_elements(arguments, ", ");
-
2281  printer->add_text(", 0.0");
-
2282  }
-
2283  printer->add_text(")");
-
2284 }
-
2285 
-
2286 /**
-
2287  * Rename arguments to NET_RECEIVE block with corresponding pointer variable
+
2189  // rename variables but need to see if they are actually used
+
2190  auto parameters = info.net_receive_node->get_parameters();
+
2191  if (!parameters.empty()) {
+
2192  int i = 0;
+
2193  printer->add_newline();
+
2194  for (auto& parameter: parameters) {
+
2195  auto name = parameter->get_node_name();
+
2196  bool var_used = VarUsageVisitor().variable_used(node, "(*" + name + ")");
+
2197  if (var_used) {
+
2198  printer->fmt_line("double* {} = weights + weight_index + {};", name, i);
+
2199  RenameVisitor vr(name, "*" + name);
+
2200  node.visit_children(vr);
+
2201  }
+
2202  i++;
+
2203  }
+
2204  }
+
2205 }
+
2206 
+
2207 
+
2208 void CodegenCoreneuronCppVisitor::print_net_send_call(const FunctionCall& node) {
+
2209  auto const& arguments = node.get_arguments();
+
2210  const auto& tqitem = get_variable_name("tqitem");
+
2211  std::string weight_index = "weight_index";
+
2212  std::string pnt = "pnt";
+
2213 
+
2214  // for functions not generated from NET_RECEIVE blocks (i.e. top level INITIAL block)
+
2215  // the weight_index argument is 0.
+
2216  if (!printing_net_receive && !printing_net_init) {
+
2217  weight_index = "0";
+
2218  auto var = get_variable_name("point_process");
+
2219  if (info.artificial_cell) {
+
2220  pnt = "(Point_process*)" + var;
+
2221  }
+
2222  }
+
2223 
+
2224  // artificial cells don't use spike buffering
+
2225  // clang-format off
+
2226  if (info.artificial_cell) {
+
2227  printer->fmt_text("artcell_net_send(&{}, {}, {}, nt->_t+", tqitem, weight_index, pnt);
+
2228  } else {
+
2229  const auto& point_process = get_variable_name("point_process");
+
2230  const auto& t = get_variable_name("t");
+
2231  printer->add_text("net_send_buffering(");
+
2232  printer->fmt_text("nt, ml->_net_send_buffer, 0, {}, {}, {}, {}+", tqitem, weight_index, point_process, t);
+
2233  }
+
2234  // clang-format off
+
2235  print_vector_elements(arguments, ", ");
+
2236  printer->add_text(')');
+
2237 }
+
2238 
+
2239 
+
2240 void CodegenCoreneuronCppVisitor::print_net_move_call(const FunctionCall& node) {
+
2241  if (!printing_net_receive && !printing_net_init) {
+
2242  throw std::runtime_error("Error : net_move only allowed in NET_RECEIVE block");
+
2243  }
+
2244 
+
2245  auto const& arguments = node.get_arguments();
+
2246  const auto& tqitem = get_variable_name("tqitem");
+
2247  std::string weight_index = "-1";
+
2248  std::string pnt = "pnt";
+
2249 
+
2250  // artificial cells don't use spike buffering
+
2251  // clang-format off
+
2252  if (info.artificial_cell) {
+
2253  printer->fmt_text("artcell_net_move(&{}, {}, ", tqitem, pnt);
+
2254  print_vector_elements(arguments, ", ");
+
2255  printer->add_text(")");
+
2256  } else {
+
2257  const auto& point_process = get_variable_name("point_process");
+
2258  printer->add_text("net_send_buffering(");
+
2259  printer->fmt_text("nt, ml->_net_send_buffer, 2, {}, {}, {}, ", tqitem, weight_index, point_process);
+
2260  print_vector_elements(arguments, ", ");
+
2261  printer->add_text(", 0.0");
+
2262  printer->add_text(")");
+
2263  }
+
2264 }
+
2265 
+
2266 
+
2267 void CodegenCoreneuronCppVisitor::print_net_event_call(const FunctionCall& node) {
+
2268  const auto& arguments = node.get_arguments();
+
2269  if (info.artificial_cell) {
+
2270  printer->add_text("net_event(pnt, ");
+
2271  print_vector_elements(arguments, ", ");
+
2272  } else {
+
2273  const auto& point_process = get_variable_name("point_process");
+
2274  printer->add_text("net_send_buffering(");
+
2275  printer->fmt_text("nt, ml->_net_send_buffer, 1, -1, -1, {}, ", point_process);
+
2276  print_vector_elements(arguments, ", ");
+
2277  printer->add_text(", 0.0");
+
2278  }
+
2279  printer->add_text(")");
+
2280 }
+
2281 
+
2282 /**
+
2283  * Rename arguments to NET_RECEIVE block with corresponding pointer variable
+
2284  *
+
2285  * Arguments to NET_RECEIVE block are packed and passed via weight vector. These
+
2286  * variables need to be replaced with corresponding pointer variable. For example,
+
2287  * if mod file is like
2288  *
-
2289  * Arguments to NET_RECEIVE block are packed and passed via weight vector. These
-
2290  * variables need to be replaced with corresponding pointer variable. For example,
-
2291  * if mod file is like
-
2292  *
-
2293  * \code{.mod}
-
2294  * NET_RECEIVE (weight, R){
-
2295  * INITIAL {
-
2296  * R=1
-
2297  * }
-
2298  * }
-
2299  * \endcode
-
2300  *
-
2301  * then generated code for initial block should be:
-
2302  *
-
2303  * \code{.cpp}
-
2304  * double* R = weights + weight_index + 0;
-
2305  * (*R) = 1.0;
-
2306  * \endcode
-
2307  *
-
2308  * So, the `R` in AST needs to be renamed with `(*R)`.
-
2309  */
-
2310 static void rename_net_receive_arguments(const ast::NetReceiveBlock& net_receive_node, const ast::Node& node) {
-
2311  const auto& parameters = net_receive_node.get_parameters();
-
2312  for (auto& parameter: parameters) {
-
2313  const auto& name = parameter->get_node_name();
-
2314  auto var_used = VarUsageVisitor().variable_used(node, name);
-
2315  if (var_used) {
-
2316  RenameVisitor vr(name, "(*" + name + ")");
-
2317  node.get_statement_block()->visit_children(vr);
-
2318  }
-
2319  }
-
2320 }
-
2321 
-
2322 
-
2323 void CodegenCoreneuronCppVisitor::print_net_init() {
-
2324  const auto node = info.net_receive_initial_node;
-
2325  if (node == nullptr) {
-
2326  return;
-
2327  }
-
2328 
-
2329  // rename net_receive arguments used in the initial block of net_receive
-
2330  rename_net_receive_arguments(*info.net_receive_node, *node);
-
2331 
-
2332  printing_net_init = true;
-
2333  auto args = "Point_process* pnt, int weight_index, double flag";
-
2334  printer->add_newline(2);
-
2335  printer->add_line("/** initialize block for net receive */");
-
2336  printer->fmt_push_block("static void net_init({})", args);
-
2337  auto block = node->get_statement_block().get();
-
2338  if (block->get_statements().empty()) {
-
2339  printer->add_line("// do nothing");
-
2340  } else {
-
2341  print_net_receive_common_code(*node);
-
2342  print_statement_block(*block, false, false);
-
2343  if (node->is_initial_block()) {
-
2344  print_net_init_acc_serial_annotation_block_end();
-
2345  print_kernel_data_present_annotation_block_end();
-
2346  printer->add_line("auto& nsb = ml->_net_send_buffer;");
-
2347  print_net_send_buf_update_to_host();
-
2348  }
-
2349  }
-
2350  printer->pop_block();
-
2351  printing_net_init = false;
-
2352 }
-
2353 
-
2354 
-
2355 void CodegenCoreneuronCppVisitor::print_send_event_move() {
-
2356  printer->add_newline();
-
2357  printer->add_line("NetSendBuffer_t* nsb = ml->_net_send_buffer;");
-
2358  print_net_send_buf_update_to_host();
-
2359  printer->push_block("for (int i=0; i < nsb->_cnt; i++)");
-
2360  printer->add_multi_line(R"CODE(
-
2361  int type = nsb->_sendtype[i];
-
2362  int tid = nt->id;
-
2363  double t = nsb->_nsb_t[i];
-
2364  double flag = nsb->_nsb_flag[i];
-
2365  int vdata_index = nsb->_vdata_index[i];
-
2366  int weight_index = nsb->_weight_index[i];
-
2367  int point_index = nsb->_pnt_index[i];
-
2368  net_sem_from_gpu(type, vdata_index, weight_index, tid, point_index, t, flag);
-
2369  )CODE");
-
2370  printer->pop_block();
-
2371  printer->add_line("nsb->_cnt = 0;");
-
2372  print_net_send_buf_count_update_to_device();
-
2373 }
-
2374 
+
2289  * \code{.mod}
+
2290  * NET_RECEIVE (weight, R){
+
2291  * INITIAL {
+
2292  * R=1
+
2293  * }
+
2294  * }
+
2295  * \endcode
+
2296  *
+
2297  * then generated code for initial block should be:
+
2298  *
+
2299  * \code{.cpp}
+
2300  * double* R = weights + weight_index + 0;
+
2301  * (*R) = 1.0;
+
2302  * \endcode
+
2303  *
+
2304  * So, the `R` in AST needs to be renamed with `(*R)`.
+
2305  */
+
2306 static void rename_net_receive_arguments(const ast::NetReceiveBlock& net_receive_node, const ast::Node& node) {
+
2307  const auto& parameters = net_receive_node.get_parameters();
+
2308  for (auto& parameter: parameters) {
+
2309  const auto& name = parameter->get_node_name();
+
2310  auto var_used = VarUsageVisitor().variable_used(node, name);
+
2311  if (var_used) {
+
2312  RenameVisitor vr(name, "(*" + name + ")");
+
2313  node.get_statement_block()->visit_children(vr);
+
2314  }
+
2315  }
+
2316 }
+
2317 
+
2318 
+
2319 void CodegenCoreneuronCppVisitor::print_net_init() {
+
2320  const auto node = info.net_receive_initial_node;
+
2321  if (node == nullptr) {
+
2322  return;
+
2323  }
+
2324 
+
2325  // rename net_receive arguments used in the initial block of net_receive
+
2326  rename_net_receive_arguments(*info.net_receive_node, *node);
+
2327 
+
2328  printing_net_init = true;
+
2329  auto args = "Point_process* pnt, int weight_index, double flag";
+
2330  printer->add_newline(2);
+
2331  printer->add_line("/** initialize block for net receive */");
+
2332  printer->fmt_push_block("static void net_init({})", args);
+
2333  auto block = node->get_statement_block().get();
+
2334  if (block->get_statements().empty()) {
+
2335  printer->add_line("// do nothing");
+
2336  } else {
+
2337  print_net_receive_common_code(*node);
+
2338  print_statement_block(*block, false, false);
+
2339  if (node->is_initial_block()) {
+
2340  print_net_init_acc_serial_annotation_block_end();
+
2341  print_kernel_data_present_annotation_block_end();
+
2342  printer->add_line("auto& nsb = ml->_net_send_buffer;");
+
2343  print_net_send_buf_update_to_host();
+
2344  }
+
2345  }
+
2346  printer->pop_block();
+
2347  printing_net_init = false;
+
2348 }
+
2349 
+
2350 
+
2351 void CodegenCoreneuronCppVisitor::print_send_event_move() {
+
2352  printer->add_newline();
+
2353  printer->add_line("NetSendBuffer_t* nsb = ml->_net_send_buffer;");
+
2354  print_net_send_buf_update_to_host();
+
2355  printer->push_block("for (int i=0; i < nsb->_cnt; i++)");
+
2356  printer->add_multi_line(R"CODE(
+
2357  int type = nsb->_sendtype[i];
+
2358  int tid = nt->id;
+
2359  double t = nsb->_nsb_t[i];
+
2360  double flag = nsb->_nsb_flag[i];
+
2361  int vdata_index = nsb->_vdata_index[i];
+
2362  int weight_index = nsb->_weight_index[i];
+
2363  int point_index = nsb->_pnt_index[i];
+
2364  net_sem_from_gpu(type, vdata_index, weight_index, tid, point_index, t, flag);
+
2365  )CODE");
+
2366  printer->pop_block();
+
2367  printer->add_line("nsb->_cnt = 0;");
+
2368  print_net_send_buf_count_update_to_device();
+
2369 }
+
2370 
+
2371 
+
2372 std::string CodegenCoreneuronCppVisitor::net_receive_buffering_declaration() {
+
2373  return fmt::format("void {}(NrnThread* nt)", method_name("net_buf_receive"));
+
2374 }
2375 
-
2376 std::string CodegenCoreneuronCppVisitor::net_receive_buffering_declaration() {
-
2377  return fmt::format("void {}(NrnThread* nt)", method_name("net_buf_receive"));
-
2378 }
-
2379 
-
2380 
-
2381 void CodegenCoreneuronCppVisitor::print_get_memb_list() {
-
2382  printer->add_line("Memb_list* ml = get_memb_list(nt);");
-
2383  printer->push_block("if (!ml)");
-
2384  printer->add_line("return;");
-
2385  printer->pop_block();
-
2386  printer->add_newline();
-
2387 }
-
2388 
-
2389 
-
2390 void CodegenCoreneuronCppVisitor::print_net_receive_loop_begin() {
-
2391  printer->add_line("int count = nrb->_displ_cnt;");
-
2392  print_channel_iteration_block_parallel_hint(BlockType::NetReceive, info.net_receive_node);
-
2393  printer->push_block("for (int i = 0; i < count; i++)");
-
2394 }
-
2395 
+
2376 
+
2377 void CodegenCoreneuronCppVisitor::print_get_memb_list() {
+
2378  printer->add_line("Memb_list* ml = get_memb_list(nt);");
+
2379  printer->push_block("if (!ml)");
+
2380  printer->add_line("return;");
+
2381  printer->pop_block();
+
2382  printer->add_newline();
+
2383 }
+
2384 
+
2385 
+
2386 void CodegenCoreneuronCppVisitor::print_net_receive_loop_begin() {
+
2387  printer->add_line("int count = nrb->_displ_cnt;");
+
2388  print_channel_iteration_block_parallel_hint(BlockType::NetReceive, info.net_receive_node);
+
2389  printer->push_block("for (int i = 0; i < count; i++)");
+
2390 }
+
2391 
+
2392 
+
2393 void CodegenCoreneuronCppVisitor::print_net_receive_loop_end() {
+
2394  printer->pop_block();
+
2395 }
2396 
-
2397 void CodegenCoreneuronCppVisitor::print_net_receive_loop_end() {
-
2398  printer->pop_block();
-
2399 }
-
2400 
-
2401 
-
2402 void CodegenCoreneuronCppVisitor::print_net_receive_buffering(bool need_mech_inst) {
-
2403  if (!net_receive_required() || info.artificial_cell) {
-
2404  return;
-
2405  }
-
2406  printer->add_newline(2);
-
2407  printer->push_block(net_receive_buffering_declaration());
+
2397 
+
2398 void CodegenCoreneuronCppVisitor::print_net_receive_buffering(bool need_mech_inst) {
+
2399  if (!net_receive_required() || info.artificial_cell) {
+
2400  return;
+
2401  }
+
2402  printer->add_newline(2);
+
2403  printer->push_block(net_receive_buffering_declaration());
+
2404 
+
2405  print_get_memb_list();
+
2406 
+
2407  const auto& net_receive = method_name("net_receive_kernel");
2408 
-
2409  print_get_memb_list();
+
2409  print_kernel_data_present_annotation_block_begin();
2410 
-
2411  const auto& net_receive = method_name("net_receive_kernel");
-
2412 
-
2413  print_kernel_data_present_annotation_block_begin();
-
2414 
-
2415  printer->add_line("NetReceiveBuffer_t* nrb = ml->_net_receive_buffer;");
-
2416  if (need_mech_inst) {
-
2417  printer->fmt_line("auto* const inst = static_cast<{0}*>(ml->instance);", instance_struct());
-
2418  }
-
2419  print_net_receive_loop_begin();
-
2420  printer->add_line("int start = nrb->_displ[i];");
-
2421  printer->add_line("int end = nrb->_displ[i+1];");
-
2422  printer->push_block("for (int j = start; j < end; j++)");
-
2423  printer->add_multi_line(R"CODE(
-
2424  int index = nrb->_nrb_index[j];
-
2425  int offset = nrb->_pnt_index[index];
-
2426  double t = nrb->_nrb_t[index];
-
2427  int weight_index = nrb->_weight_index[index];
-
2428  double flag = nrb->_nrb_flag[index];
-
2429  Point_process* point_process = nt->pntprocs + offset;
-
2430  )CODE");
-
2431  printer->add_line(net_receive, "(t, point_process, inst, nt, ml, weight_index, flag);");
-
2432  printer->pop_block();
-
2433  print_net_receive_loop_end();
+
2411  printer->add_line("NetReceiveBuffer_t* nrb = ml->_net_receive_buffer;");
+
2412  if (need_mech_inst) {
+
2413  printer->fmt_line("auto* const inst = static_cast<{0}*>(ml->instance);", instance_struct());
+
2414  }
+
2415  print_net_receive_loop_begin();
+
2416  printer->add_line("int start = nrb->_displ[i];");
+
2417  printer->add_line("int end = nrb->_displ[i+1];");
+
2418  printer->push_block("for (int j = start; j < end; j++)");
+
2419  printer->add_multi_line(R"CODE(
+
2420  int index = nrb->_nrb_index[j];
+
2421  int offset = nrb->_pnt_index[index];
+
2422  double t = nrb->_nrb_t[index];
+
2423  int weight_index = nrb->_weight_index[index];
+
2424  double flag = nrb->_nrb_flag[index];
+
2425  Point_process* point_process = nt->pntprocs + offset;
+
2426  )CODE");
+
2427  printer->add_line(net_receive, "(t, point_process, inst, nt, ml, weight_index, flag);");
+
2428  printer->pop_block();
+
2429  print_net_receive_loop_end();
+
2430 
+
2431  print_device_stream_wait();
+
2432  printer->add_line("nrb->_displ_cnt = 0;");
+
2433  printer->add_line("nrb->_cnt = 0;");
2434 
-
2435  print_device_stream_wait();
-
2436  printer->add_line("nrb->_displ_cnt = 0;");
-
2437  printer->add_line("nrb->_cnt = 0;");
+
2435  if (info.net_send_used || info.net_event_used) {
+
2436  print_send_event_move();
+
2437  }
2438 
-
2439  if (info.net_send_used || info.net_event_used) {
-
2440  print_send_event_move();
-
2441  }
+
2439  print_kernel_data_present_annotation_block_end();
+
2440  printer->pop_block();
+
2441 }
2442 
-
2443  print_kernel_data_present_annotation_block_end();
-
2444  printer->pop_block();
-
2445 }
-
2446 
+
2443 
+
2444 void CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update() const {
+
2445  printer->add_line("i = nsb->_cnt++;");
+
2446 }
2447 
-
2448 void CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update() const {
-
2449  printer->add_line("i = nsb->_cnt++;");
-
2450 }
-
2451 
-
2452 
-
2453 void CodegenCoreneuronCppVisitor::print_net_send_buffering_grow() {
-
2454  printer->push_block("if (i >= nsb->_size)");
-
2455  printer->add_line("nsb->grow();");
-
2456  printer->pop_block();
-
2457 }
-
2458 
-
2459 
-
2460 void CodegenCoreneuronCppVisitor::print_net_send_buffering() {
-
2461  if (!net_send_buffer_required()) {
-
2462  return;
-
2463  }
-
2464 
-
2465  printer->add_newline(2);
-
2466  auto args =
-
2467  "const NrnThread* nt, NetSendBuffer_t* nsb, int type, int vdata_index, "
-
2468  "int weight_index, int point_index, double t, double flag";
-
2469  printer->fmt_push_block("static inline void net_send_buffering({})", args);
-
2470  printer->add_line("int i = 0;");
-
2471  print_net_send_buffering_cnt_update();
-
2472  print_net_send_buffering_grow();
-
2473  printer->push_block("if (i < nsb->_size)");
-
2474  printer->add_multi_line(R"CODE(
-
2475  nsb->_sendtype[i] = type;
-
2476  nsb->_vdata_index[i] = vdata_index;
-
2477  nsb->_weight_index[i] = weight_index;
-
2478  nsb->_pnt_index[i] = point_index;
-
2479  nsb->_nsb_t[i] = t;
-
2480  nsb->_nsb_flag[i] = flag;
-
2481  )CODE");
-
2482  printer->pop_block();
-
2483  printer->pop_block();
-
2484 }
-
2485 
-
2486 
-
2487 void CodegenCoreneuronCppVisitor::print_net_receive_kernel() {
-
2488  if (!net_receive_required()) {
-
2489  return;
-
2490  }
-
2491 
-
2492  printing_net_receive = true;
-
2493  const auto node = info.net_receive_node;
-
2494 
-
2495  // rename net_receive arguments used in the block itself
-
2496  rename_net_receive_arguments(*info.net_receive_node, *node);
-
2497 
-
2498  std::string name;
-
2499  ParamVector params;
-
2500  if (!info.artificial_cell) {
-
2501  name = method_name("net_receive_kernel");
-
2502  params.emplace_back("", "double", "", "t");
-
2503  params.emplace_back("", "Point_process*", "", "pnt");
-
2504  params.emplace_back("", fmt::format("{}*", instance_struct()),
-
2505  "", "inst");
-
2506  params.emplace_back("", "NrnThread*", "", "nt");
-
2507  params.emplace_back("", "Memb_list*", "", "ml");
-
2508  params.emplace_back("", "int", "", "weight_index");
-
2509  params.emplace_back("", "double", "", "flag");
-
2510  } else {
-
2511  name = method_name("net_receive");
-
2512  params.emplace_back("", "Point_process*", "", "pnt");
-
2513  params.emplace_back("", "int", "", "weight_index");
-
2514  params.emplace_back("", "double", "", "flag");
-
2515  }
-
2516 
-
2517  printer->add_newline(2);
-
2518  printer->fmt_push_block("static inline void {}({})", name, get_parameter_str(params));
-
2519  print_net_receive_common_code(*node, info.artificial_cell);
-
2520  if (info.artificial_cell) {
-
2521  printer->add_line("double t = nt->_t;");
-
2522  }
-
2523 
-
2524  // set voltage variable if it is used in the block (e.g. for WATCH statement)
-
2525  auto v_used = VarUsageVisitor().variable_used(*node->get_statement_block(), "v");
-
2526  if (v_used) {
-
2527  printer->add_line("int node_id = ml->nodeindices[id];");
-
2528  printer->add_line("v = nt->_actual_v[node_id];");
-
2529  }
-
2530 
-
2531  printer->fmt_line("{} = t;", get_variable_name("tsave"));
+
2448 
+
2449 void CodegenCoreneuronCppVisitor::print_net_send_buffering_grow() {
+
2450  printer->push_block("if (i >= nsb->_size)");
+
2451  printer->add_line("nsb->grow();");
+
2452  printer->pop_block();
+
2453 }
+
2454 
+
2455 
+
2456 void CodegenCoreneuronCppVisitor::print_net_send_buffering() {
+
2457  if (!net_send_buffer_required()) {
+
2458  return;
+
2459  }
+
2460 
+
2461  printer->add_newline(2);
+
2462  auto args =
+
2463  "const NrnThread* nt, NetSendBuffer_t* nsb, int type, int vdata_index, "
+
2464  "int weight_index, int point_index, double t, double flag";
+
2465  printer->fmt_push_block("static inline void net_send_buffering({})", args);
+
2466  printer->add_line("int i = 0;");
+
2467  print_net_send_buffering_cnt_update();
+
2468  print_net_send_buffering_grow();
+
2469  printer->push_block("if (i < nsb->_size)");
+
2470  printer->add_multi_line(R"CODE(
+
2471  nsb->_sendtype[i] = type;
+
2472  nsb->_vdata_index[i] = vdata_index;
+
2473  nsb->_weight_index[i] = weight_index;
+
2474  nsb->_pnt_index[i] = point_index;
+
2475  nsb->_nsb_t[i] = t;
+
2476  nsb->_nsb_flag[i] = flag;
+
2477  )CODE");
+
2478  printer->pop_block();
+
2479  printer->pop_block();
+
2480 }
+
2481 
+
2482 
+
2483 void CodegenCoreneuronCppVisitor::print_net_receive_kernel() {
+
2484  if (!net_receive_required()) {
+
2485  return;
+
2486  }
+
2487 
+
2488  printing_net_receive = true;
+
2489  const auto node = info.net_receive_node;
+
2490 
+
2491  // rename net_receive arguments used in the block itself
+
2492  rename_net_receive_arguments(*info.net_receive_node, *node);
+
2493 
+
2494  std::string name;
+
2495  ParamVector params;
+
2496  if (!info.artificial_cell) {
+
2497  name = method_name("net_receive_kernel");
+
2498  params.emplace_back("", "double", "", "t");
+
2499  params.emplace_back("", "Point_process*", "", "pnt");
+
2500  params.emplace_back("", fmt::format("{}*", instance_struct()),
+
2501  "", "inst");
+
2502  params.emplace_back("", "NrnThread*", "", "nt");
+
2503  params.emplace_back("", "Memb_list*", "", "ml");
+
2504  params.emplace_back("", "int", "", "weight_index");
+
2505  params.emplace_back("", "double", "", "flag");
+
2506  } else {
+
2507  name = method_name("net_receive");
+
2508  params.emplace_back("", "Point_process*", "", "pnt");
+
2509  params.emplace_back("", "int", "", "weight_index");
+
2510  params.emplace_back("", "double", "", "flag");
+
2511  }
+
2512 
+
2513  printer->add_newline(2);
+
2514  printer->fmt_push_block("static inline void {}({})", name, get_parameter_str(params));
+
2515  print_net_receive_common_code(*node, info.artificial_cell);
+
2516  if (info.artificial_cell) {
+
2517  printer->add_line("double t = nt->_t;");
+
2518  }
+
2519 
+
2520  // set voltage variable if it is used in the block (e.g. for WATCH statement)
+
2521  auto v_used = VarUsageVisitor().variable_used(*node->get_statement_block(), "v");
+
2522  if (v_used) {
+
2523  printer->add_line("int node_id = ml->nodeindices[id];");
+
2524  printer->add_line("v = nt->_actual_v[node_id];");
+
2525  }
+
2526 
+
2527  printer->fmt_line("{} = t;", get_variable_name("tsave"));
+
2528 
+
2529  if (info.is_watch_used()) {
+
2530  printer->add_line("bool watch_remove = false;");
+
2531  }
2532 
-
2533  if (info.is_watch_used()) {
-
2534  printer->add_line("bool watch_remove = false;");
-
2535  }
-
2536 
-
2537  printer->add_indent();
-
2538  node->get_statement_block()->accept(*this);
-
2539  printer->add_newline();
-
2540  printer->pop_block();
+
2533  printer->add_indent();
+
2534  node->get_statement_block()->accept(*this);
+
2535  printer->add_newline();
+
2536  printer->pop_block();
+
2537 
+
2538  printing_net_receive = false;
+
2539 }
+
2540 
2541 
-
2542  printing_net_receive = false;
-
2543 }
-
2544 
-
2545 
-
2546 void CodegenCoreneuronCppVisitor::print_net_receive() {
-
2547  if (!net_receive_required()) {
-
2548  return;
-
2549  }
-
2550 
-
2551  printing_net_receive = true;
-
2552  if (!info.artificial_cell) {
-
2553  const auto& name = method_name("net_receive");
-
2554  ParamVector params = {
-
2555  {"", "Point_process*", "", "pnt"},
-
2556  {"", "int", "", "weight_index"},
-
2557  {"", "double", "", "flag"}};
-
2558  printer->add_newline(2);
-
2559  printer->fmt_push_block("static void {}({})", name, get_parameter_str(params));
-
2560  printer->add_line("NrnThread* nt = nrn_threads + pnt->_tid;");
-
2561  printer->add_line("Memb_list* ml = get_memb_list(nt);");
-
2562  printer->add_line("NetReceiveBuffer_t* nrb = ml->_net_receive_buffer;");
-
2563  printer->push_block("if (nrb->_cnt >= nrb->_size)");
-
2564  printer->add_line("realloc_net_receive_buffer(nt, ml);");
-
2565  printer->pop_block();
-
2566  printer->add_multi_line(R"CODE(
-
2567  int id = nrb->_cnt;
-
2568  nrb->_pnt_index[id] = pnt-nt->pntprocs;
-
2569  nrb->_weight_index[id] = weight_index;
-
2570  nrb->_nrb_t[id] = nt->_t;
-
2571  nrb->_nrb_flag[id] = flag;
-
2572  nrb->_cnt++;
-
2573  )CODE");
-
2574  printer->pop_block();
-
2575  }
-
2576  printing_net_receive = false;
-
2577 }
-
2578 
-
2579 
-
2580 /**
-
2581  * \todo Data is not derived. Need to add instance into instance struct?
-
2582  * data used here is wrong in AoS because as in original implementation,
-
2583  * data is not incremented every iteration for AoS. May be better to derive
-
2584  * actual variable names? [resolved now?]
-
2585  * slist needs to added as local variable
-
2586  */
-
2587 void CodegenCoreneuronCppVisitor::print_derivimplicit_kernel(const Block& block) {
-
2588  auto ext_args = external_method_arguments();
-
2589  auto ext_params = get_parameter_str(external_method_parameters());
-
2590  auto suffix = info.mod_suffix;
-
2591  auto list_num = info.derivimplicit_list_num;
-
2592  auto block_name = block.get_node_name();
-
2593  auto primes_size = info.primes_size;
-
2594  auto stride = "*pnodecount+id";
-
2595 
-
2596  printer->add_newline(2);
-
2597 
-
2598  printer->push_block("namespace");
-
2599  printer->fmt_push_block("struct _newton_{}_{}", block_name, info.mod_suffix);
-
2600  printer->fmt_push_block("int operator()({}) const", get_parameter_str(external_method_parameters()));
-
2601  auto const instance = fmt::format("auto* const inst = static_cast<{0}*>(ml->instance);",
-
2602  instance_struct());
-
2603  auto const slist1 = fmt::format("auto const& slist{} = {};",
-
2604  list_num,
-
2605  get_variable_name(fmt::format("slist{}", list_num)));
-
2606  auto const slist2 = fmt::format("auto& slist{} = {};",
-
2607  list_num + 1,
-
2608  get_variable_name(fmt::format("slist{}", list_num + 1)));
-
2609  auto const dlist1 = fmt::format("auto const& dlist{} = {};",
-
2610  list_num,
-
2611  get_variable_name(fmt::format("dlist{}", list_num)));
-
2612  auto const dlist2 = fmt::format(
-
2613  "double* dlist{} = static_cast<double*>(thread[dith{}()].pval) + ({}*pnodecount);",
-
2614  list_num + 1,
-
2615  list_num,
-
2616  info.primes_size);
-
2617  printer->add_line(instance);
-
2618  if (ion_variable_struct_required()) {
-
2619  print_ion_variable();
-
2620  }
-
2621  printer->fmt_line("double* savstate{} = static_cast<double*>(thread[dith{}()].pval);",
-
2622  list_num,
-
2623  list_num);
-
2624  printer->add_line(slist1);
-
2625  printer->add_line(dlist1);
-
2626  printer->add_line(dlist2);
-
2627 
-
2628  print_statement_block(*block.get_statement_block(), false, false);
-
2629 
-
2630  printer->add_line("int counter = -1;");
-
2631  printer->fmt_push_block("for (int i=0; i<{}; i++)", info.num_primes);
-
2632  printer->fmt_push_block("if (*deriv{}_advance(thread))", list_num);
-
2633  printer->fmt_line(
-
2634  "dlist{0}[(++counter){1}] = "
-
2635  "data[dlist{2}[i]{1}]-(data[slist{2}[i]{1}]-savstate{2}[i{1}])/nt->_dt;",
-
2636  list_num + 1,
-
2637  stride,
-
2638  list_num);
-
2639  printer->chain_block("else");
-
2640  printer->fmt_line("dlist{0}[(++counter){1}] = data[slist{2}[i]{1}]-savstate{2}[i{1}];",
-
2641  list_num + 1,
-
2642  stride,
-
2643  list_num);
-
2644  printer->pop_block();
-
2645  printer->pop_block();
-
2646  printer->add_line("return 0;");
-
2647  printer->pop_block(); // operator()
-
2648  printer->pop_block(";"); // struct
-
2649  printer->pop_block(); // namespace
-
2650  printer->add_newline();
-
2651  printer->fmt_push_block("int {}_{}({})", block_name, suffix, ext_params);
-
2652  printer->add_line(instance);
-
2653  printer->fmt_line("double* savstate{} = (double*) thread[dith{}()].pval;", list_num, list_num);
-
2654  printer->add_line(slist1);
-
2655  printer->add_line(slist2);
-
2656  printer->add_line(dlist2);
-
2657  printer->fmt_push_block("for (int i=0; i<{}; i++)", info.num_primes);
-
2658  printer->fmt_line("savstate{}[i{}] = data[slist{}[i]{}];", list_num, stride, list_num, stride);
-
2659  printer->pop_block();
-
2660  printer->fmt_line(
-
2661  "int reset = nrn_newton_thread(static_cast<NewtonSpace*>(*newtonspace{}(thread)), {}, "
-
2662  "slist{}, _newton_{}_{}{{}}, dlist{}, {});",
-
2663  list_num,
-
2664  primes_size,
-
2665  list_num + 1,
-
2666  block_name,
-
2667  suffix,
-
2668  list_num + 1,
-
2669  ext_args);
-
2670  printer->add_line("return reset;");
-
2671  printer->pop_block();
-
2672  printer->add_newline(2);
-
2673 }
-
2674 
+
2542 void CodegenCoreneuronCppVisitor::print_net_receive() {
+
2543  if (!net_receive_required()) {
+
2544  return;
+
2545  }
+
2546 
+
2547  printing_net_receive = true;
+
2548  if (!info.artificial_cell) {
+
2549  const auto& name = method_name("net_receive");
+
2550  ParamVector params = {
+
2551  {"", "Point_process*", "", "pnt"},
+
2552  {"", "int", "", "weight_index"},
+
2553  {"", "double", "", "flag"}};
+
2554  printer->add_newline(2);
+
2555  printer->fmt_push_block("static void {}({})", name, get_parameter_str(params));
+
2556  printer->add_line("NrnThread* nt = nrn_threads + pnt->_tid;");
+
2557  printer->add_line("Memb_list* ml = get_memb_list(nt);");
+
2558  printer->add_line("NetReceiveBuffer_t* nrb = ml->_net_receive_buffer;");
+
2559  printer->push_block("if (nrb->_cnt >= nrb->_size)");
+
2560  printer->add_line("realloc_net_receive_buffer(nt, ml);");
+
2561  printer->pop_block();
+
2562  printer->add_multi_line(R"CODE(
+
2563  int id = nrb->_cnt;
+
2564  nrb->_pnt_index[id] = pnt-nt->pntprocs;
+
2565  nrb->_weight_index[id] = weight_index;
+
2566  nrb->_nrb_t[id] = nt->_t;
+
2567  nrb->_nrb_flag[id] = flag;
+
2568  nrb->_cnt++;
+
2569  )CODE");
+
2570  printer->pop_block();
+
2571  }
+
2572  printing_net_receive = false;
+
2573 }
+
2574 
+
2575 
+
2576 /**
+
2577  * \todo Data is not derived. Need to add instance into instance struct?
+
2578  * data used here is wrong in AoS because as in original implementation,
+
2579  * data is not incremented every iteration for AoS. May be better to derive
+
2580  * actual variable names? [resolved now?]
+
2581  * slist needs to added as local variable
+
2582  */
+
2583 void CodegenCoreneuronCppVisitor::print_derivimplicit_kernel(const Block& block) {
+
2584  auto ext_args = external_method_arguments();
+
2585  auto ext_params = get_parameter_str(external_method_parameters());
+
2586  auto suffix = info.mod_suffix;
+
2587  auto list_num = info.derivimplicit_list_num;
+
2588  auto block_name = block.get_node_name();
+
2589  auto primes_size = info.primes_size;
+
2590  auto stride = "*pnodecount+id";
+
2591 
+
2592  printer->add_newline(2);
+
2593 
+
2594  printer->push_block("namespace");
+
2595  printer->fmt_push_block("struct _newton_{}_{}", block_name, info.mod_suffix);
+
2596  printer->fmt_push_block("int operator()({}) const", get_parameter_str(external_method_parameters()));
+
2597  auto const instance = fmt::format("auto* const inst = static_cast<{0}*>(ml->instance);",
+
2598  instance_struct());
+
2599  auto const slist1 = fmt::format("auto const& slist{} = {};",
+
2600  list_num,
+
2601  get_variable_name(fmt::format("slist{}", list_num)));
+
2602  auto const slist2 = fmt::format("auto& slist{} = {};",
+
2603  list_num + 1,
+
2604  get_variable_name(fmt::format("slist{}", list_num + 1)));
+
2605  auto const dlist1 = fmt::format("auto const& dlist{} = {};",
+
2606  list_num,
+
2607  get_variable_name(fmt::format("dlist{}", list_num)));
+
2608  auto const dlist2 = fmt::format(
+
2609  "double* dlist{} = static_cast<double*>(thread[dith{}()].pval) + ({}*pnodecount);",
+
2610  list_num + 1,
+
2611  list_num,
+
2612  info.primes_size);
+
2613  printer->add_line(instance);
+
2614  if (ion_variable_struct_required()) {
+
2615  print_ion_variable();
+
2616  }
+
2617  printer->fmt_line("double* savstate{} = static_cast<double*>(thread[dith{}()].pval);",
+
2618  list_num,
+
2619  list_num);
+
2620  printer->add_line(slist1);
+
2621  printer->add_line(dlist1);
+
2622  printer->add_line(dlist2);
+
2623 
+
2624  print_statement_block(*block.get_statement_block(), false, false);
+
2625 
+
2626  printer->add_line("int counter = -1;");
+
2627  printer->fmt_push_block("for (int i=0; i<{}; i++)", info.num_primes);
+
2628  printer->fmt_push_block("if (*deriv{}_advance(thread))", list_num);
+
2629  printer->fmt_line(
+
2630  "dlist{0}[(++counter){1}] = "
+
2631  "data[dlist{2}[i]{1}]-(data[slist{2}[i]{1}]-savstate{2}[i{1}])/nt->_dt;",
+
2632  list_num + 1,
+
2633  stride,
+
2634  list_num);
+
2635  printer->chain_block("else");
+
2636  printer->fmt_line("dlist{0}[(++counter){1}] = data[slist{2}[i]{1}]-savstate{2}[i{1}];",
+
2637  list_num + 1,
+
2638  stride,
+
2639  list_num);
+
2640  printer->pop_block();
+
2641  printer->pop_block();
+
2642  printer->add_line("return 0;");
+
2643  printer->pop_block(); // operator()
+
2644  printer->pop_block(";"); // struct
+
2645  printer->pop_block(); // namespace
+
2646  printer->add_newline();
+
2647  printer->fmt_push_block("int {}_{}({})", block_name, suffix, ext_params);
+
2648  printer->add_line(instance);
+
2649  printer->fmt_line("double* savstate{} = (double*) thread[dith{}()].pval;", list_num, list_num);
+
2650  printer->add_line(slist1);
+
2651  printer->add_line(slist2);
+
2652  printer->add_line(dlist2);
+
2653  printer->fmt_push_block("for (int i=0; i<{}; i++)", info.num_primes);
+
2654  printer->fmt_line("savstate{}[i{}] = data[slist{}[i]{}];", list_num, stride, list_num, stride);
+
2655  printer->pop_block();
+
2656  printer->fmt_line(
+
2657  "int reset = nrn_newton_thread(static_cast<NewtonSpace*>(*newtonspace{}(thread)), {}, "
+
2658  "slist{}, _newton_{}_{}{{}}, dlist{}, {});",
+
2659  list_num,
+
2660  primes_size,
+
2661  list_num + 1,
+
2662  block_name,
+
2663  suffix,
+
2664  list_num + 1,
+
2665  ext_args);
+
2666  printer->add_line("return reset;");
+
2667  printer->pop_block();
+
2668  printer->add_newline(2);
+
2669 }
+
2670 
+
2671 
+
2672 void CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device() const {
+
2673  // nothing to do on cpu
+
2674 }
2675 
-
2676 void CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device() const {
-
2677  // nothing to do on cpu
-
2678 }
-
2679 
+
2676 
+
2677 /****************************************************************************************/
+
2678 /* Print nrn_state routine */
+
2679 /****************************************************************************************/
2680 
-
2681 /****************************************************************************************/
-
2682 /* Print nrn_state routine */
-
2683 /****************************************************************************************/
-
2684 
-
2685 
-
2686 void CodegenCoreneuronCppVisitor::print_nrn_state() {
-
2687  if (!nrn_state_required()) {
-
2688  return;
-
2689  }
-
2690 
-
2691  printer->add_newline(2);
-
2692  printer->add_line("/** update state */");
-
2693  print_global_function_common_code(BlockType::State);
-
2694  print_channel_iteration_block_parallel_hint(BlockType::State, info.nrn_state_block);
-
2695  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
2696 
-
2697  printer->add_line("int node_id = node_index[id];");
-
2698  printer->add_line("double v = voltage[node_id];");
-
2699  print_v_unused();
-
2700 
-
2701  /**
-
2702  * \todo Eigen solver node also emits IonCurVar variable in the functor
-
2703  * but that shouldn't update ions in derivative block
-
2704  */
-
2705  if (ion_variable_struct_required()) {
-
2706  print_ion_variable();
-
2707  }
-
2708 
-
2709  auto read_statements = ion_read_statements(BlockType::State);
-
2710  for (auto& statement: read_statements) {
-
2711  printer->add_line(statement);
+
2681 
+
2682 void CodegenCoreneuronCppVisitor::print_nrn_state() {
+
2683  if (!nrn_state_required()) {
+
2684  return;
+
2685  }
+
2686 
+
2687  printer->add_newline(2);
+
2688  printer->add_line("/** update state */");
+
2689  print_global_function_common_code(BlockType::State);
+
2690  print_channel_iteration_block_parallel_hint(BlockType::State, info.nrn_state_block);
+
2691  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
2692 
+
2693  printer->add_line("int node_id = node_index[id];");
+
2694  printer->add_line("double v = voltage[node_id];");
+
2695  print_v_unused();
+
2696 
+
2697  /**
+
2698  * \todo Eigen solver node also emits IonCurVar variable in the functor
+
2699  * but that shouldn't update ions in derivative block
+
2700  */
+
2701  if (ion_variable_struct_required()) {
+
2702  print_ion_variable();
+
2703  }
+
2704 
+
2705  auto read_statements = ion_read_statements(BlockType::State);
+
2706  for (auto& statement: read_statements) {
+
2707  printer->add_line(statement);
+
2708  }
+
2709 
+
2710  if (info.nrn_state_block) {
+
2711  info.nrn_state_block->visit_children(*this);
2712  }
2713 
-
2714  if (info.nrn_state_block) {
-
2715  info.nrn_state_block->visit_children(*this);
-
2716  }
-
2717 
-
2718  if (info.currents.empty() && info.breakpoint_node != nullptr) {
-
2719  auto block = info.breakpoint_node->get_statement_block();
-
2720  print_statement_block(*block, false, false);
-
2721  }
-
2722 
-
2723  const auto& write_statements = ion_write_statements(BlockType::State);
-
2724  for (auto& statement: write_statements) {
-
2725  const auto& text = process_shadow_update_statement(statement, BlockType::State);
-
2726  printer->add_line(text);
-
2727  }
+
2714  if (info.currents.empty() && info.breakpoint_node != nullptr) {
+
2715  auto block = info.breakpoint_node->get_statement_block();
+
2716  print_statement_block(*block, false, false);
+
2717  }
+
2718 
+
2719  const auto& write_statements = ion_write_statements(BlockType::State);
+
2720  for (auto& statement: write_statements) {
+
2721  const auto& text = process_shadow_update_statement(statement, BlockType::State);
+
2722  printer->add_line(text);
+
2723  }
+
2724  printer->pop_block();
+
2725 
+
2726  print_kernel_data_present_annotation_block_end();
+
2727 
2728  printer->pop_block();
-
2729 
-
2730  print_kernel_data_present_annotation_block_end();
+
2729 }
+
2730 
2731 
-
2732  printer->pop_block();
-
2733 }
-
2734 
+
2732 /****************************************************************************************/
+
2733 /* Print nrn_cur related routines */
+
2734 /****************************************************************************************/
2735 
-
2736 /****************************************************************************************/
-
2737 /* Print nrn_cur related routines */
-
2738 /****************************************************************************************/
-
2739 
-
2740 
-
2741 void CodegenCoreneuronCppVisitor::print_nrn_current(const BreakpointBlock& node) {
-
2742  const auto& args = internal_method_parameters();
-
2743  const auto& block = node.get_statement_block();
-
2744  printer->add_newline(2);
-
2745  printer->fmt_push_block("inline double nrn_current_{}({})",
-
2746  info.mod_suffix,
-
2747  get_parameter_str(args));
-
2748  printer->add_line("double current = 0.0;");
-
2749  print_statement_block(*block, false, false);
-
2750  for (auto& current: info.currents) {
-
2751  const auto& name = get_variable_name(current);
-
2752  printer->fmt_line("current += {};", name);
-
2753  }
-
2754  printer->add_line("return current;");
-
2755  printer->pop_block();
-
2756 }
-
2757 
-
2758 
-
2759 void CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel(const BreakpointBlock& node) {
-
2760  const auto& block = node.get_statement_block();
-
2761  print_statement_block(*block, false, false);
-
2762  if (!info.currents.empty()) {
-
2763  std::string sum;
-
2764  for (const auto& current: info.currents) {
-
2765  auto var = breakpoint_current(current);
-
2766  sum += get_variable_name(var);
-
2767  if (&current != &info.currents.back()) {
-
2768  sum += "+";
-
2769  }
-
2770  }
-
2771  printer->fmt_line("double rhs = {};", sum);
-
2772  }
-
2773 
-
2774  std::string sum;
-
2775  for (const auto& conductance: info.conductances) {
-
2776  auto var = breakpoint_current(conductance.variable);
-
2777  sum += get_variable_name(var);
-
2778  if (&conductance != &info.conductances.back()) {
-
2779  sum += "+";
-
2780  }
-
2781  }
-
2782  printer->fmt_line("double g = {};", sum);
-
2783 
-
2784  for (const auto& conductance: info.conductances) {
-
2785  if (!conductance.ion.empty()) {
-
2786  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + conductance.ion + "dv";
-
2787  const auto& rhs = get_variable_name(conductance.variable);
-
2788  const ShadowUseStatement statement{lhs, "+=", rhs};
-
2789  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
-
2790  printer->add_line(text);
-
2791  }
-
2792  }
-
2793 }
-
2794 
-
2795 
-
2796 void CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel() {
-
2797  printer->fmt_line("double g = nrn_current_{}({}+0.001);",
-
2798  info.mod_suffix,
-
2799  internal_method_arguments());
-
2800  for (auto& ion: info.ions) {
-
2801  for (auto& var: ion.writes) {
-
2802  if (ion.is_ionic_current(var)) {
-
2803  const auto& name = get_variable_name(var);
-
2804  printer->fmt_line("double di{} = {};", ion.name, name);
-
2805  }
-
2806  }
-
2807  }
-
2808  printer->fmt_line("double rhs = nrn_current_{}({});",
-
2809  info.mod_suffix,
-
2810  internal_method_arguments());
-
2811  printer->add_line("g = (g-rhs)/0.001;");
-
2812  for (auto& ion: info.ions) {
-
2813  for (auto& var: ion.writes) {
-
2814  if (ion.is_ionic_current(var)) {
-
2815  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + ion.name + "dv";
-
2816  auto rhs = fmt::format("(di{}-{})/0.001", ion.name, get_variable_name(var));
-
2817  if (info.point_process) {
-
2818  auto area = get_variable_name(naming::NODE_AREA_VARIABLE);
-
2819  rhs += fmt::format("*1.e2/{}", area);
-
2820  }
-
2821  const ShadowUseStatement statement{lhs, "+=", rhs};
-
2822  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
-
2823  printer->add_line(text);
-
2824  }
-
2825  }
-
2826  }
-
2827 }
-
2828 
-
2829 
-
2830 void CodegenCoreneuronCppVisitor::print_nrn_cur_kernel(const BreakpointBlock& node) {
-
2831  printer->add_line("int node_id = node_index[id];");
-
2832  printer->add_line("double v = voltage[node_id];");
-
2833  print_v_unused();
-
2834  if (ion_variable_struct_required()) {
-
2835  print_ion_variable();
-
2836  }
-
2837 
-
2838  const auto& read_statements = ion_read_statements(BlockType::Equation);
-
2839  for (auto& statement: read_statements) {
-
2840  printer->add_line(statement);
-
2841  }
-
2842 
-
2843  if (info.conductances.empty()) {
-
2844  print_nrn_cur_non_conductance_kernel();
-
2845  } else {
-
2846  print_nrn_cur_conductance_kernel(node);
-
2847  }
-
2848 
-
2849  const auto& write_statements = ion_write_statements(BlockType::Equation);
-
2850  for (auto& statement: write_statements) {
-
2851  auto text = process_shadow_update_statement(statement, BlockType::Equation);
-
2852  printer->add_line(text);
-
2853  }
-
2854 
-
2855  if (info.point_process) {
-
2856  const auto& area = get_variable_name(naming::NODE_AREA_VARIABLE);
-
2857  printer->fmt_line("double mfactor = 1.e2/{};", area);
-
2858  printer->add_line("g = g*mfactor;");
-
2859  printer->add_line("rhs = rhs*mfactor;");
-
2860  }
+
2736 
+
2737 void CodegenCoreneuronCppVisitor::print_nrn_current(const BreakpointBlock& node) {
+
2738  const auto& args = internal_method_parameters();
+
2739  const auto& block = node.get_statement_block();
+
2740  printer->add_newline(2);
+
2741  printer->fmt_push_block("inline double nrn_current_{}({})",
+
2742  info.mod_suffix,
+
2743  get_parameter_str(args));
+
2744  printer->add_line("double current = 0.0;");
+
2745  print_statement_block(*block, false, false);
+
2746  for (auto& current: info.currents) {
+
2747  const auto& name = get_variable_name(current);
+
2748  printer->fmt_line("current += {};", name);
+
2749  }
+
2750  printer->add_line("return current;");
+
2751  printer->pop_block();
+
2752 }
+
2753 
+
2754 
+
2755 void CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel(const BreakpointBlock& node) {
+
2756  const auto& block = node.get_statement_block();
+
2757  print_statement_block(*block, false, false);
+
2758  if (!info.currents.empty()) {
+
2759  std::string sum;
+
2760  for (const auto& current: info.currents) {
+
2761  auto var = breakpoint_current(current);
+
2762  sum += get_variable_name(var);
+
2763  if (&current != &info.currents.back()) {
+
2764  sum += "+";
+
2765  }
+
2766  }
+
2767  printer->fmt_line("double rhs = {};", sum);
+
2768  }
+
2769 
+
2770  std::string sum;
+
2771  for (const auto& conductance: info.conductances) {
+
2772  auto var = breakpoint_current(conductance.variable);
+
2773  sum += get_variable_name(var);
+
2774  if (&conductance != &info.conductances.back()) {
+
2775  sum += "+";
+
2776  }
+
2777  }
+
2778  printer->fmt_line("double g = {};", sum);
+
2779 
+
2780  for (const auto& conductance: info.conductances) {
+
2781  if (!conductance.ion.empty()) {
+
2782  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + conductance.ion + "dv";
+
2783  const auto& rhs = get_variable_name(conductance.variable);
+
2784  const ShadowUseStatement statement{lhs, "+=", rhs};
+
2785  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
+
2786  printer->add_line(text);
+
2787  }
+
2788  }
+
2789 }
+
2790 
+
2791 
+
2792 void CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel() {
+
2793  printer->fmt_line("double g = nrn_current_{}({}+0.001);",
+
2794  info.mod_suffix,
+
2795  internal_method_arguments());
+
2796  for (auto& ion: info.ions) {
+
2797  for (auto& var: ion.writes) {
+
2798  if (ion.is_ionic_current(var)) {
+
2799  const auto& name = get_variable_name(var);
+
2800  printer->fmt_line("double di{} = {};", ion.name, name);
+
2801  }
+
2802  }
+
2803  }
+
2804  printer->fmt_line("double rhs = nrn_current_{}({});",
+
2805  info.mod_suffix,
+
2806  internal_method_arguments());
+
2807  printer->add_line("g = (g-rhs)/0.001;");
+
2808  for (auto& ion: info.ions) {
+
2809  for (auto& var: ion.writes) {
+
2810  if (ion.is_ionic_current(var)) {
+
2811  const auto& lhs = std::string(naming::ION_VARNAME_PREFIX) + "di" + ion.name + "dv";
+
2812  auto rhs = fmt::format("(di{}-{})/0.001", ion.name, get_variable_name(var));
+
2813  if (info.point_process) {
+
2814  auto area = get_variable_name(naming::NODE_AREA_VARIABLE);
+
2815  rhs += fmt::format("*1.e2/{}", area);
+
2816  }
+
2817  const ShadowUseStatement statement{lhs, "+=", rhs};
+
2818  const auto& text = process_shadow_update_statement(statement, BlockType::Equation);
+
2819  printer->add_line(text);
+
2820  }
+
2821  }
+
2822  }
+
2823 }
+
2824 
+
2825 
+
2826 void CodegenCoreneuronCppVisitor::print_nrn_cur_kernel(const BreakpointBlock& node) {
+
2827  printer->add_line("int node_id = node_index[id];");
+
2828  printer->add_line("double v = voltage[node_id];");
+
2829  print_v_unused();
+
2830  if (ion_variable_struct_required()) {
+
2831  print_ion_variable();
+
2832  }
+
2833 
+
2834  const auto& read_statements = ion_read_statements(BlockType::Equation);
+
2835  for (auto& statement: read_statements) {
+
2836  printer->add_line(statement);
+
2837  }
+
2838 
+
2839  if (info.conductances.empty()) {
+
2840  print_nrn_cur_non_conductance_kernel();
+
2841  } else {
+
2842  print_nrn_cur_conductance_kernel(node);
+
2843  }
+
2844 
+
2845  const auto& write_statements = ion_write_statements(BlockType::Equation);
+
2846  for (auto& statement: write_statements) {
+
2847  auto text = process_shadow_update_statement(statement, BlockType::Equation);
+
2848  printer->add_line(text);
+
2849  }
+
2850 
+
2851  if (info.point_process) {
+
2852  const auto& area = get_variable_name(naming::NODE_AREA_VARIABLE);
+
2853  printer->fmt_line("double mfactor = 1.e2/{};", area);
+
2854  printer->add_line("g = g*mfactor;");
+
2855  printer->add_line("rhs = rhs*mfactor;");
+
2856  }
+
2857 
+
2858  print_g_unused();
+
2859 }
+
2860 
2861 
-
2862  print_g_unused();
-
2863 }
-
2864 
-
2865 
-
2866 void CodegenCoreneuronCppVisitor::print_fast_imem_calculation() {
-
2867  if (!info.electrode_current) {
-
2868  return;
-
2869  }
-
2870  std::string rhs, d;
-
2871  auto rhs_op = operator_for_rhs();
-
2872  auto d_op = operator_for_d();
-
2873  if (info.point_process) {
-
2874  rhs = "shadow_rhs[id]";
-
2875  d = "shadow_d[id]";
-
2876  } else {
-
2877  rhs = "rhs";
-
2878  d = "g";
-
2879  }
-
2880 
-
2881  printer->push_block("if (nt->nrn_fast_imem)");
-
2882  if (nrn_cur_reduction_loop_required()) {
-
2883  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
2884  printer->add_line("int node_id = node_index[id];");
-
2885  }
-
2886  printer->fmt_line("nt->nrn_fast_imem->nrn_sav_rhs[node_id] {} {};", rhs_op, rhs);
-
2887  printer->fmt_line("nt->nrn_fast_imem->nrn_sav_d[node_id] {} {};", d_op, d);
-
2888  if (nrn_cur_reduction_loop_required()) {
-
2889  printer->pop_block();
-
2890  }
-
2891  printer->pop_block();
-
2892 }
-
2893 
-
2894 
-
2895 void CodegenCoreneuronCppVisitor::print_nrn_cur() {
-
2896  if (!nrn_cur_required()) {
-
2897  return;
+
2862 void CodegenCoreneuronCppVisitor::print_fast_imem_calculation() {
+
2863  if (!info.electrode_current) {
+
2864  return;
+
2865  }
+
2866  std::string rhs, d;
+
2867  auto rhs_op = operator_for_rhs();
+
2868  auto d_op = operator_for_d();
+
2869  if (info.point_process) {
+
2870  rhs = "shadow_rhs[id]";
+
2871  d = "shadow_d[id]";
+
2872  } else {
+
2873  rhs = "rhs";
+
2874  d = "g";
+
2875  }
+
2876 
+
2877  printer->push_block("if (nt->nrn_fast_imem)");
+
2878  if (nrn_cur_reduction_loop_required()) {
+
2879  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
2880  printer->add_line("int node_id = node_index[id];");
+
2881  }
+
2882  printer->fmt_line("nt->nrn_fast_imem->nrn_sav_rhs[node_id] {} {};", rhs_op, rhs);
+
2883  printer->fmt_line("nt->nrn_fast_imem->nrn_sav_d[node_id] {} {};", d_op, d);
+
2884  if (nrn_cur_reduction_loop_required()) {
+
2885  printer->pop_block();
+
2886  }
+
2887  printer->pop_block();
+
2888 }
+
2889 
+
2890 
+
2891 void CodegenCoreneuronCppVisitor::print_nrn_cur() {
+
2892  if (!nrn_cur_required()) {
+
2893  return;
+
2894  }
+
2895 
+
2896  if (info.conductances.empty()) {
+
2897  print_nrn_current(*info.breakpoint_node);
2898  }
2899 
-
2900  if (info.conductances.empty()) {
-
2901  print_nrn_current(*info.breakpoint_node);
-
2902  }
-
2903 
-
2904  printer->add_newline(2);
-
2905  printer->add_line("/** update current */");
-
2906  print_global_function_common_code(BlockType::Equation);
-
2907  print_channel_iteration_block_parallel_hint(BlockType::Equation, info.breakpoint_node);
-
2908  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
2909  print_nrn_cur_kernel(*info.breakpoint_node);
-
2910  print_nrn_cur_matrix_shadow_update();
-
2911  if (!nrn_cur_reduction_loop_required()) {
-
2912  print_fast_imem_calculation();
-
2913  }
-
2914  printer->pop_block();
-
2915 
-
2916  if (nrn_cur_reduction_loop_required()) {
-
2917  printer->push_block("for (int id = 0; id < nodecount; id++)");
-
2918  print_nrn_cur_matrix_shadow_reduction();
-
2919  printer->pop_block();
-
2920  print_fast_imem_calculation();
-
2921  }
+
2900  printer->add_newline(2);
+
2901  printer->add_line("/** update current */");
+
2902  print_global_function_common_code(BlockType::Equation);
+
2903  print_channel_iteration_block_parallel_hint(BlockType::Equation, info.breakpoint_node);
+
2904  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
2905  print_nrn_cur_kernel(*info.breakpoint_node);
+
2906  print_nrn_cur_matrix_shadow_update();
+
2907  if (!nrn_cur_reduction_loop_required()) {
+
2908  print_fast_imem_calculation();
+
2909  }
+
2910  printer->pop_block();
+
2911 
+
2912  if (nrn_cur_reduction_loop_required()) {
+
2913  printer->push_block("for (int id = 0; id < nodecount; id++)");
+
2914  print_nrn_cur_matrix_shadow_reduction();
+
2915  printer->pop_block();
+
2916  print_fast_imem_calculation();
+
2917  }
+
2918 
+
2919  print_kernel_data_present_annotation_block_end();
+
2920  printer->pop_block();
+
2921 }
2922 
-
2923  print_kernel_data_present_annotation_block_end();
-
2924  printer->pop_block();
-
2925 }
-
2926 
+
2923 
+
2924 /****************************************************************************************/
+
2925 /* Main code printing entry points */
+
2926 /****************************************************************************************/
2927 
-
2928 /****************************************************************************************/
-
2929 /* Main code printing entry points */
-
2930 /****************************************************************************************/
-
2931 
-
2932 void CodegenCoreneuronCppVisitor::print_headers_include() {
-
2933  print_standard_includes();
-
2934  print_backend_includes();
-
2935  print_coreneuron_includes();
-
2936 }
-
2937 
-
2938 
-
2939 void CodegenCoreneuronCppVisitor::print_common_getters() {
-
2940  print_first_pointer_var_index_getter();
-
2941  print_first_random_var_index_getter();
-
2942  print_net_receive_arg_size_getter();
-
2943  print_thread_getters();
-
2944  print_num_variable_getter();
-
2945  print_mech_type_getter();
-
2946  print_memb_list_getter();
-
2947 }
-
2948 
-
2949 
-
2950 void CodegenCoreneuronCppVisitor::print_data_structures(bool print_initializers) {
-
2951  print_mechanism_global_var_structure(print_initializers);
-
2952  print_mechanism_range_var_structure(print_initializers);
-
2953  print_ion_var_structure();
-
2954 }
-
2955 
-
2956 
-
2957 void CodegenCoreneuronCppVisitor::print_v_unused() const {
-
2958  if (!info.vectorize) {
-
2959  return;
-
2960  }
-
2961  printer->add_multi_line(R"CODE(
-
2962  #if NRN_PRCELLSTATE
-
2963  inst->v_unused[id] = v;
-
2964  #endif
-
2965  )CODE");
-
2966 }
-
2967 
-
2968 
-
2969 void CodegenCoreneuronCppVisitor::print_g_unused() const {
-
2970  printer->add_multi_line(R"CODE(
-
2971  #if NRN_PRCELLSTATE
-
2972  inst->g_unused[id] = g;
-
2973  #endif
-
2974  )CODE");
-
2975 }
-
2976 
-
2977 
-
2978 void CodegenCoreneuronCppVisitor::print_compute_functions() {
-
2979  print_top_verbatim_blocks();
-
2980  for (const auto& procedure: info.procedures) {
-
2981  print_procedure(*procedure);
-
2982  }
-
2983  for (const auto& function: info.functions) {
-
2984  print_function(*function);
-
2985  }
-
2986  for (const auto& function: info.function_tables) {
-
2987  print_function_tables(*function);
-
2988  }
-
2989  for (size_t i = 0; i < info.before_after_blocks.size(); i++) {
-
2990  print_before_after_block(info.before_after_blocks[i], i);
+
2928 void CodegenCoreneuronCppVisitor::print_headers_include() {
+
2929  print_standard_includes();
+
2930  print_backend_includes();
+
2931  print_coreneuron_includes();
+
2932 }
+
2933 
+
2934 
+
2935 void CodegenCoreneuronCppVisitor::print_common_getters() {
+
2936  print_first_pointer_var_index_getter();
+
2937  print_first_random_var_index_getter();
+
2938  print_net_receive_arg_size_getter();
+
2939  print_thread_getters();
+
2940  print_num_variable_getter();
+
2941  print_mech_type_getter();
+
2942  print_memb_list_getter();
+
2943 }
+
2944 
+
2945 
+
2946 void CodegenCoreneuronCppVisitor::print_data_structures(bool print_initializers) {
+
2947  print_mechanism_global_var_structure(print_initializers);
+
2948  print_mechanism_range_var_structure(print_initializers);
+
2949  print_ion_var_structure();
+
2950 }
+
2951 
+
2952 
+
2953 void CodegenCoreneuronCppVisitor::print_v_unused() const {
+
2954  if (!info.vectorize) {
+
2955  return;
+
2956  }
+
2957  printer->add_multi_line(R"CODE(
+
2958  #if NRN_PRCELLSTATE
+
2959  inst->v_unused[id] = v;
+
2960  #endif
+
2961  )CODE");
+
2962 }
+
2963 
+
2964 
+
2965 void CodegenCoreneuronCppVisitor::print_g_unused() const {
+
2966  printer->add_multi_line(R"CODE(
+
2967  #if NRN_PRCELLSTATE
+
2968  inst->g_unused[id] = g;
+
2969  #endif
+
2970  )CODE");
+
2971 }
+
2972 
+
2973 
+
2974 void CodegenCoreneuronCppVisitor::print_compute_functions() {
+
2975  print_top_verbatim_blocks();
+
2976  for (const auto& procedure: info.procedures) {
+
2977  print_procedure(*procedure);
+
2978  }
+
2979  for (const auto& function: info.functions) {
+
2980  print_function(*function);
+
2981  }
+
2982  for (const auto& function: info.function_tables) {
+
2983  print_function_tables(*function);
+
2984  }
+
2985  for (size_t i = 0; i < info.before_after_blocks.size(); i++) {
+
2986  print_before_after_block(info.before_after_blocks[i], i);
+
2987  }
+
2988  for (const auto& callback: info.derivimplicit_callbacks) {
+
2989  const auto& block = *callback->get_node_to_solve();
+
2990  print_derivimplicit_kernel(block);
2991  }
-
2992  for (const auto& callback: info.derivimplicit_callbacks) {
-
2993  const auto& block = *callback->get_node_to_solve();
-
2994  print_derivimplicit_kernel(block);
-
2995  }
-
2996  print_net_send_buffering();
-
2997  print_net_init();
-
2998  print_watch_activate();
-
2999  print_watch_check();
-
3000  print_net_receive_kernel();
-
3001  print_net_receive();
-
3002  print_net_receive_buffering();
-
3003  print_nrn_init();
-
3004  print_nrn_cur();
-
3005  print_nrn_state();
-
3006 }
-
3007 
-
3008 
-
3009 void CodegenCoreneuronCppVisitor::print_codegen_routines() {
-
3010  print_backend_info();
-
3011  print_headers_include();
-
3012  print_namespace_start();
-
3013  print_nmodl_constants();
-
3014  print_prcellstate_macros();
-
3015  print_mechanism_info();
-
3016  print_data_structures(true);
-
3017  print_global_variables_for_hoc();
-
3018  print_common_getters();
-
3019  print_memory_allocation_routine();
-
3020  print_abort_routine();
-
3021  print_thread_memory_callbacks();
-
3022  print_instance_variable_setup();
-
3023  print_nrn_alloc();
-
3024  print_nrn_constructor();
-
3025  print_nrn_destructor();
-
3026  print_function_prototypes();
-
3027  print_functors_definitions();
-
3028  print_compute_functions();
-
3029  print_check_table_thread_function();
-
3030  print_mechanism_register();
-
3031  print_namespace_stop();
-
3032 }
-
3033 
+
2992  print_net_send_buffering();
+
2993  print_net_init();
+
2994  print_watch_activate();
+
2995  print_watch_check();
+
2996  print_net_receive_kernel();
+
2997  print_net_receive();
+
2998  print_net_receive_buffering();
+
2999  print_nrn_init();
+
3000  print_nrn_cur();
+
3001  print_nrn_state();
+
3002 }
+
3003 
+
3004 
+
3005 void CodegenCoreneuronCppVisitor::print_codegen_routines() {
+
3006  print_backend_info();
+
3007  print_headers_include();
+
3008  print_namespace_start();
+
3009  print_nmodl_constants();
+
3010  print_prcellstate_macros();
+
3011  print_mechanism_info();
+
3012  print_data_structures(true);
+
3013  print_global_variables_for_hoc();
+
3014  print_common_getters();
+
3015  print_memory_allocation_routine();
+
3016  print_abort_routine();
+
3017  print_thread_memory_callbacks();
+
3018  print_instance_variable_setup();
+
3019  print_nrn_alloc();
+
3020  print_nrn_constructor();
+
3021  print_nrn_destructor();
+
3022  print_function_prototypes();
+
3023  print_functors_definitions();
+
3024  print_compute_functions();
+
3025  print_check_table_thread_function();
+
3026  print_mechanism_register();
+
3027  print_namespace_stop();
+
3028 }
+
3029 
+
3030 
+
3031 /****************************************************************************************/
+
3032 /* Overloaded visitor routines */
+
3033 /****************************************************************************************/
3034 
-
3035 /****************************************************************************************/
-
3036 /* Overloaded visitor routines */
-
3037 /****************************************************************************************/
-
3038 
-
3039 
-
3040 void CodegenCoreneuronCppVisitor::visit_derivimplicit_callback(const ast::DerivimplicitCallback& node) {
-
3041  printer->fmt_line("{}_{}({});",
-
3042  node.get_node_to_solve()->get_node_name(),
-
3043  info.mod_suffix,
-
3044  external_method_arguments());
-
3045 }
-
3046 
-
3047 
-
3048 void CodegenCoreneuronCppVisitor::visit_for_netcon(const ast::ForNetcon& node) {
-
3049  // For_netcon should take the same arguments as net_receive and apply the operations
-
3050  // in the block to the weights of the netcons. Since all the weights are on the same vector,
-
3051  // weights, we have a mask of operations that we apply iteratively, advancing the offset
-
3052  // to the next netcon.
-
3053  const auto& args = node.get_parameters();
-
3054  RenameVisitor v;
-
3055  const auto& statement_block = node.get_statement_block();
-
3056  for (size_t i_arg = 0; i_arg < args.size(); ++i_arg) {
-
3057  // sanitize node_name since we want to substitute names like (*w) as they are
-
3058  auto old_name =
-
3059  std::regex_replace(args[i_arg]->get_node_name(), regex_special_chars, R"(\$&)");
-
3060  const auto& new_name = fmt::format("weights[{} + nt->_fornetcon_weight_perm[i]]", i_arg);
-
3061  v.set(old_name, new_name);
-
3062  statement_block->accept(v);
-
3063  }
-
3064 
-
3065  const auto index =
-
3066  std::find_if(info.semantics.begin(), info.semantics.end(), [](const IndexSemantics& a) {
-
3067  return a.name == naming::FOR_NETCON_SEMANTIC;
-
3068  })->index;
+
3035 
+
3036 void CodegenCoreneuronCppVisitor::visit_derivimplicit_callback(const ast::DerivimplicitCallback& node) {
+
3037  printer->fmt_line("{}_{}({});",
+
3038  node.get_node_to_solve()->get_node_name(),
+
3039  info.mod_suffix,
+
3040  external_method_arguments());
+
3041 }
+
3042 
+
3043 
+
3044 void CodegenCoreneuronCppVisitor::visit_for_netcon(const ast::ForNetcon& node) {
+
3045  // For_netcon should take the same arguments as net_receive and apply the operations
+
3046  // in the block to the weights of the netcons. Since all the weights are on the same vector,
+
3047  // weights, we have a mask of operations that we apply iteratively, advancing the offset
+
3048  // to the next netcon.
+
3049  const auto& args = node.get_parameters();
+
3050  RenameVisitor v;
+
3051  const auto& statement_block = node.get_statement_block();
+
3052  for (size_t i_arg = 0; i_arg < args.size(); ++i_arg) {
+
3053  // sanitize node_name since we want to substitute names like (*w) as they are
+
3054  auto old_name =
+
3055  std::regex_replace(args[i_arg]->get_node_name(), regex_special_chars, R"(\$&)");
+
3056  const auto& new_name = fmt::format("weights[{} + nt->_fornetcon_weight_perm[i]]", i_arg);
+
3057  v.set(old_name, new_name);
+
3058  statement_block->accept(v);
+
3059  }
+
3060 
+
3061  const auto index = position_of_int_var(naming::FOR_NETCON_VARIABLE);
+
3062 
+
3063  printer->fmt_text("const size_t offset = {}*pnodecount + id;", index);
+
3064  printer->add_newline();
+
3065  printer->add_line(
+
3066  "const size_t for_netcon_start = nt->_fornetcon_perm_indices[indexes[offset]];");
+
3067  printer->add_line(
+
3068  "const size_t for_netcon_end = nt->_fornetcon_perm_indices[indexes[offset] + 1];");
3069 
-
3070  printer->fmt_text("const size_t offset = {}*pnodecount + id;", index);
-
3071  printer->add_newline();
-
3072  printer->add_line(
-
3073  "const size_t for_netcon_start = nt->_fornetcon_perm_indices[indexes[offset]];");
-
3074  printer->add_line(
-
3075  "const size_t for_netcon_end = nt->_fornetcon_perm_indices[indexes[offset] + 1];");
-
3076 
-
3077  printer->push_block("for (auto i = for_netcon_start; i < for_netcon_end; ++i)");
-
3078  print_statement_block(*statement_block, false, false);
-
3079  printer->pop_block();
-
3080 }
-
3081 
-
3082 
-
3083 void CodegenCoreneuronCppVisitor::visit_watch_statement(const ast::WatchStatement& /* node */) {
-
3084  printer->add_text(fmt::format("nrn_watch_activate(inst, id, pnodecount, {}, v, watch_remove)",
-
3085  current_watch_statement++));
-
3086 }
-
3087 
-
3088 } // namespace codegen
-
3089 } // namespace nmodl
+
3070  printer->push_block("for (auto i = for_netcon_start; i < for_netcon_end; ++i)");
+
3071  print_statement_block(*statement_block, false, false);
+
3072  printer->pop_block();
+
3073 }
+
3074 
+
3075 
+
3076 void CodegenCoreneuronCppVisitor::visit_watch_statement(const ast::WatchStatement& /* node */) {
+
3077  printer->add_text(fmt::format("nrn_watch_activate(inst, id, pnodecount, {}, v, watch_remove)",
+
3078  current_watch_statement++));
+
3079 }
+
3080 
+
3081 } // namespace codegen
+
3082 } // namespace nmodl
nmodl::ast::BeforeBlock
Represents a BEFORE block in NMODL.
Definition: before_block.hpp:38
nmodl::codegen::CodegenCoreneuronCppVisitor::print_coreneuron_includes
void print_coreneuron_includes()
Print includes from coreneuron.
Definition: codegen_coreneuron_cpp_visitor.cpp:948
-
nmodl::codegen::CodegenCoreneuronCppVisitor::net_receive_buffering_declaration
virtual std::string net_receive_buffering_declaration()
Generate the target backend code for the net_receive_buffering function delcaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:2376
+
nmodl::codegen::CodegenCoreneuronCppVisitor::net_receive_buffering_declaration
virtual std::string net_receive_buffering_declaration()
Generate the target backend code for the net_receive_buffering function delcaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:2372
nmodl::ast::DerivimplicitCallback::get_node_to_solve
std::shared_ptr< Block > get_node_to_solve() const noexcept
Getter for member variable DerivimplicitCallback::node_to_solve.
Definition: derivimplicit_callback.hpp:143
nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_cur_reduction_loop_required
virtual bool nrn_cur_reduction_loop_required()
Check if reduction block in nrn_cur required.
Definition: codegen_coreneuron_cpp_visitor.cpp:253
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_coreneuron_cpp_visitor.cpp:2244
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_move_call
void print_net_move_call(const ast::FunctionCall &node) override
Print call to net_move.
Definition: codegen_coreneuron_cpp_visitor.cpp:2240
nmodl::ast::Node
Base class for all AST node.
Definition: node.hpp:40
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1519
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_range_var_structure
void print_mechanism_range_var_structure(bool print_initializers) override
Print the structure that wraps all range and int variables required for the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1515
nmodl::codegen::IndexVariableInfo::is_index
bool is_index
if this is pure index (e.g.
Definition: codegen_cpp_visitor.hpp:137
+
nmodl::codegen::naming::FOR_NETCON_VARIABLE
static constexpr char FOR_NETCON_VARIABLE[]
name of the integer variabe to store FOR_NETCON info.
Definition: codegen_naming.hpp:141
nmodl::codegen::naming::CELSIUS_VARIABLE
static constexpr char CELSIUS_VARIABLE[]
global temperature variable
Definition: codegen_naming.hpp:96
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_count_update_to_host
virtual void print_net_send_buf_count_update_to_host() const
Print the code to update NetSendBuffer_t count from device to host.
Definition: codegen_coreneuron_cpp_visitor.cpp:159
nmodl::ast::BATYPE_STEP
@ BATYPE_STEP
Definition: ast_common.hpp:80
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_prototypes
void print_function_prototypes() override
Print function and procedures prototype declaration.
Definition: codegen_coreneuron_cpp_visitor.cpp:368
nmodl::codegen::IndexVariableInfo
Helper to represent information about index/int variables.
Definition: codegen_cpp_visitor.hpp:127
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2957
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_v_unused
void print_v_unused() const override
Set v_unused (voltage) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2953
nmodl::visitor::DUState
DUState
Represent a state in Def-Use chain.
Definition: defuse_analyze_visitor.hpp:28
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_derivimplicit_kernel
void print_derivimplicit_kernel(const ast::Block &block)
Print derivative kernel when derivimplicit method is used.
Definition: codegen_coreneuron_cpp_visitor.cpp:2587
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_derivimplicit_kernel
void print_derivimplicit_kernel(const ast::Block &block)
Print derivative kernel when derivimplicit method is used.
Definition: codegen_coreneuron_cpp_visitor.cpp:2583
nmodl::codegen::CodegenCoreneuronCppVisitor::print_device_stream_wait
virtual void print_device_stream_wait() const
Print the code to synchronise/wait on stream specific to NrnThread.
Definition: codegen_coreneuron_cpp_visitor.cpp:179
nmodl::codegen::BlockType::Destructor
@ Destructor
destructor block
nmodl::ast::AstNodeType::MUTEX_UNLOCK
@ MUTEX_UNLOCK
type of ast::MutexUnlock
@@ -3209,44 +3203,44 @@
nmodl::ast::BAType
BAType
enum type to distinguish BEFORE or AFTER blocks
Definition: ast_common.hpp:80
nmodl::codegen::CodegenCoreneuronCppVisitor::global_variable_name
std::string global_variable_name(const SymbolType &symbol, bool use_instance=true) const override
Determine the variable name for a global variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:854
nmodl::ast::BATYPE_INITIAL
@ BATYPE_INITIAL
Definition: ast_common.hpp:80
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device
virtual void print_newtonspace_transfer_to_device() const
Print code block to transfer newtonspace structure to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:2676
-
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:153
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_coreneuron_cpp_visitor.cpp:2212
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_newtonspace_transfer_to_device
virtual void print_newtonspace_transfer_to_device() const
Print code block to transfer newtonspace structure to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:2672
+
nmodl::codegen::naming::NRN_PRIVATE_DESTRUCTOR_METHOD
constexpr char NRN_PRIVATE_DESTRUCTOR_METHOD[]
nrn_private_destructor method in generated code
Definition: codegen_naming.hpp:156
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_call
void print_net_send_call(const ast::FunctionCall &node) override
Print call to net_send.
Definition: codegen_coreneuron_cpp_visitor.cpp:2208
nmodl::codegen::naming::POINT_PROCESS_VARIABLE
static constexpr char POINT_PROCESS_VARIABLE[]
inbuilt neuron variable for point process
Definition: codegen_naming.hpp:69
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_begin
virtual void print_net_receive_loop_begin()
Print the code for the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2390
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_begin
virtual void print_net_receive_loop_begin()
Print the code for the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2386
nmodl::ast::FunctionTableBlock::get_parameters
const ArgumentVector & get_parameters() const noexcept override
Getter for member variable FunctionTableBlock::parameters.
Definition: function_table_block.hpp:199
nmodl::codegen::naming::NTHREAD_D_SHADOW
static constexpr char NTHREAD_D_SHADOW[]
shadow d variable in neuron thread structure
Definition: codegen_naming.hpp:93
nmodl::codegen::CodegenCppVisitor::SymbolType
std::shared_ptr< symtab::Symbol > SymbolType
Definition: codegen_cpp_visitor.hpp:295
nmodl::codegen::CodegenCoreneuronCppVisitor::print_kernel_data_present_annotation_block_begin
virtual void print_kernel_data_present_annotation_block_begin()
Print accelerator annotations indicating data presence on device.
Definition: codegen_coreneuron_cpp_visitor.cpp:198
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2969
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_g_unused
void print_g_unused() const override
Set g_unused (conductance) for NRN_PRCELLSTATE feature.
Definition: codegen_coreneuron_cpp_visitor.cpp:2965
nmodl::ast::NetReceiveBlock::get_parameters
const ArgumentVector & get_parameters() const noexcept override
Getter for member variable NetReceiveBlock::parameters.
Definition: net_receive_block.hpp:176
nmodl::ast::AstNodeType::MUTEX_LOCK
@ MUTEX_LOCK
type of ast::MutexLock
- +
nmodl::codegen::CodegenCoreneuronCppVisitor::int_variable_name
std::string int_variable_name(const IndexVariableInfo &symbol, const std::string &name, bool use_instance) const override
Determine the name of an int variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:828
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print initial block statements.
Definition: codegen_coreneuron_cpp_visitor.cpp:1778
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_kernel
void print_net_receive_kernel()
Print net_receive kernel function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2487
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_initial_block
void print_initial_block(const ast::InitialBlock *node)
Print initial block statements.
Definition: codegen_coreneuron_cpp_visitor.cpp:1774
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_kernel
void print_net_receive_kernel()
Print net_receive kernel function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2483
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_getters
void print_thread_getters()
Print the getter method for thread variables and ids.
Definition: codegen_coreneuron_cpp_visitor.cpp:761
nmodl::codegen::CodegenCoreneuronCppVisitor::simulator_name
std::string simulator_name() override
Name of the simulator the code was generated for.
Definition: codegen_coreneuron_cpp_visitor.cpp:58
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering
void print_net_send_buffering()
Print kernel for buffering net_send events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2460
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering
void print_net_send_buffering()
Print kernel for buffering net_send events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2456
nmodl::codegen::CodegenCoreneuronCppVisitor::namespace_name
virtual std::string namespace_name() override
Name of "our" namespace.
Definition: codegen_coreneuron_cpp_visitor.cpp:746
nmodl::codegen::get_register_type_for_ba_block
static std::string get_register_type_for_ba_block(const ast::Block *block)
Return registration type for a given BEFORE/AFTER block /param block A BEFORE/AFTER block being regis...
Definition: codegen_coreneuron_cpp_visitor.cpp:1264
nmodl
encapsulates code generation backend implementations
Definition: ast_common.hpp:26
nmodl::ast::InitialBlock::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable InitialBlock::statement_block.
Definition: initial_block.hpp:184
nmodl::codegen::MemberType::index
@ index
index / int variables
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_coreneuron_cpp_visitor.cpp:2866
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_fast_imem_calculation
void print_fast_imem_calculation() override
Print fast membrane current calculation code.
Definition: codegen_coreneuron_cpp_visitor.cpp:2862
nmodl::codegen::CodegenCoreneuronCppVisitor::print_dt_update_to_device
virtual void print_dt_update_to_device() const
Print the code to update dt from host to device.
Definition: codegen_coreneuron_cpp_visitor.cpp:174
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init_acc_serial_annotation_block_end
virtual void print_net_init_acc_serial_annotation_block_end()
Print accelerator kernels end annotation for net_init kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:213
nmodl::codegen::CodegenCoreneuronCppVisitor::external_method_parameters
const ParamVector external_method_parameters(bool table=false) noexcept override
Parameters for functions in generated code that are called back from external code.
Definition: codegen_coreneuron_cpp_visitor.cpp:534
nmodl::codegen::Ion
Represent ions used in mod file.
Definition: codegen_info.hpp:53
-
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:144
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init
void print_net_init()
Print initial block in the net receive block.
Definition: codegen_coreneuron_cpp_visitor.cpp:2323
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_coreneuron_cpp_visitor.cpp:2271
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2006
+
nmodl::codegen::naming::NRN_CONSTRUCTOR_METHOD
static constexpr char NRN_CONSTRUCTOR_METHOD[]
nrn_constructor method in generated code
Definition: codegen_naming.hpp:147
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_init
void print_net_init()
Print initial block in the net receive block.
Definition: codegen_coreneuron_cpp_visitor.cpp:2319
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_event_call
void print_net_event_call(const ast::FunctionCall &node) override
Print call to net_event.
Definition: codegen_coreneuron_cpp_visitor.cpp:2267
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_destructor
void print_nrn_destructor() override
Print nrn_destructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2002
nmodl::codegen::CodegenCoreneuronCppVisitor::print_sdlists_init
void print_sdlists_init(bool print_initializers) override
Definition: codegen_coreneuron_cpp_visitor.cpp:981
- -
nmodl::codegen::CodegenCoreneuronCppVisitor::print_send_event_move
void print_send_event_move()
Print send event move block used in net receive as well as watch.
Definition: codegen_coreneuron_cpp_visitor.cpp:2355
+ +
nmodl::codegen::CodegenCoreneuronCppVisitor::print_send_event_move
void print_send_event_move()
Print send event move block used in net receive as well as watch.
Definition: codegen_coreneuron_cpp_visitor.cpp:2351
nmodl::codegen::CodegenCoreneuronCppVisitor::append_conc_write_statements
void append_conc_write_statements(std::vector< ShadowUseStatement > &statements, const Ion &ion, const std::string &concentration) override
Generate Function call statement for nrn_wrote_conc.
Definition: codegen_coreneuron_cpp_visitor.cpp:640
nmodl::codegen::get_prefixsum_from_name
int get_prefixsum_from_name(const std::vector< T > &variables, const std::string &name)
Definition: codegen_cpp_visitor.hpp:202
nmodl::codegen::Ion::name
std::string name
name of the ion
Definition: codegen_info.hpp:55
@@ -3257,13 +3251,13 @@
string_utils.hpp
Implement string manipulation functions.
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variables_for_hoc
void print_global_variables_for_hoc() override
Print byte arrays that register scalar and vector variables for hoc interface.
Definition: codegen_coreneuron_cpp_visitor.cpp:1207
nmodl::codegen::naming::NODE_AREA_VARIABLE
static constexpr char NODE_AREA_VARIABLE[]
inbuilt neuron variable for area of the compartment
Definition: codegen_naming.hpp:63
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_common_code
void print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)
Print the common code section for net receive related methods.
Definition: codegen_coreneuron_cpp_visitor.cpp:2161
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:2741
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_common_code
void print_net_receive_common_code(const ast::Block &node, bool need_mech_inst=true)
Print the common code section for net receive related methods.
Definition: codegen_coreneuron_cpp_visitor.cpp:2157
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_current
void print_nrn_current(const ast::BreakpointBlock &node) override
Print the nrn_current kernel.
Definition: codegen_coreneuron_cpp_visitor.cpp:2737
nmodl::ast::Ast::is_function_block
virtual bool is_function_block() const noexcept
Check if the ast node is an instance of ast::FunctionBlock.
Definition: ast.cpp:142
-
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:156
+
nmodl::codegen::naming::NRN_ALLOC_METHOD
static constexpr char NRN_ALLOC_METHOD[]
nrn_alloc method in generated code
Definition: codegen_naming.hpp:159
nmodl::codegen::IndexVariableInfo::is_integer
bool is_integer
if this is an integer (e.g.
Definition: codegen_cpp_visitor.hpp:141
nmodl::codegen::CodegenCoreneuronCppVisitor::print_first_pointer_var_index_getter
void print_first_pointer_var_index_getter()
Print the getter method for index position of first pointer variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:686
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_setup_range_variable
void print_setup_range_variable()
Print the function that initialize range variable with different data type.
Definition: codegen_coreneuron_cpp_visitor.cpp:1618
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_setup_range_variable
void print_setup_range_variable()
Print the function that initialize range variable with different data type.
Definition: codegen_coreneuron_cpp_visitor.cpp:1614
nmodl::codegen::CodegenCoreneuronCppVisitor::internal_method_arguments
std::string internal_method_arguments() override
Arguments for functions that are defined and used internally.
Definition: codegen_coreneuron_cpp_visitor.cpp:504
nmodl::parser::CDriver
Class that binds all pieces together for parsing C verbatim blocks.
Definition: c11_driver.hpp:37
nmodl::ast::BreakpointBlock::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable BreakpointBlock::statement_block.
Definition: breakpoint_block.hpp:188
@@ -3287,16 +3281,16 @@
nmodl::codegen::BlockType::Equation
@ Equation
breakpoint block
nmodl::codegen::naming::USE_TABLE_VARIABLE
static constexpr char USE_TABLE_VARIABLE[]
global variable to indicate if table is used
Definition: codegen_naming.hpp:78
nmodl::ast::WatchStatement
Represent WATCH statement in NMODL.
Definition: watch_statement.hpp:39
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_before_after_block
virtual void print_before_after_block(const ast::Block *node, size_t block_id)
Print NMODL before / after block in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:1940
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_before_after_block
virtual void print_before_after_block(const ast::Block *node, size_t block_id)
Print NMODL before / after block in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:1936
nmodl::ast::BreakpointBlock
Represents a BREAKPOINT block in NMODL.
Definition: breakpoint_block.hpp:53
driver
nmodl::parser::UnitDriver driver
Definition: parser.cpp:28
nmodl::codegen::regex_special_chars
const std::regex regex_special_chars
Definition: codegen_cpp_visitor.cpp:796
codegen_coreneuron_cpp_visitor.hpp
Visitor for printing C++ code compatible with legacy api of CoreNEURON
-
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:186
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_variable
void print_ion_variable() override
Print the ion variable struct.
Definition: codegen_coreneuron_cpp_visitor.cpp:1608
+
nmodl::codegen::naming::VERBATIM_VARIABLES_MAPPING
static const std::unordered_map< std::string, std::string > VERBATIM_VARIABLES_MAPPING
commonly used variables in verbatim block and how they should be mapped to new code generation backen...
Definition: codegen_naming.hpp:189
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_variable
void print_ion_variable() override
Print the ion variable struct.
Definition: codegen_coreneuron_cpp_visitor.cpp:1604
nmodl::codegen::BlockType::Constructor
@ Constructor
constructor block
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_structure
void print_ion_var_structure()
Print structure of ion variables used for local copies.
Definition: codegen_coreneuron_cpp_visitor.cpp:1561
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_structure
void print_ion_var_structure()
Print structure of ion variables used for local copies.
Definition: codegen_coreneuron_cpp_visitor.cpp:1557
c11_driver.hpp
nmodl::codegen::CodegenCoreneuronCppVisitor::internal_method_parameters
ParamVector internal_method_parameters() override
Parameters for internally defined functions.
Definition: codegen_coreneuron_cpp_visitor.cpp:512
nmodl::codegen::CodegenCoreneuronCppVisitor::position_of_int_var
int position_of_int_var(const std::string &name) const override
Determine the position in the data array for a given int variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:73
@@ -3304,10 +3298,9 @@
nmodl::codegen::CodegenCoreneuronCppVisitor::is_constant_variable
virtual bool is_constant_variable(const std::string &name) const
Check if variable is qualified as constant.
Definition: codegen_coreneuron_cpp_visitor.cpp:124
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_procedure_helper
void print_function_procedure_helper(const ast::Block &node) override
Common helper function to help printing function or procedure blocks.
Definition: codegen_coreneuron_cpp_visitor.cpp:434
nmodl::ast::ForNetcon::get_statement_block
std::shared_ptr< StatementBlock > get_statement_block() const noexcept override
Getter for member variable ForNetcon::statement_block.
Definition: for_netcon.hpp:185
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_for_netcon
void visit_for_netcon(const ast::ForNetcon &node) override
visit node of type ast::ForNetcon
Definition: codegen_coreneuron_cpp_visitor.cpp:3048
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:2978
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2759
-
nmodl::codegen::IndexSemantics
Represent semantic information for index variable.
Definition: codegen_info.hpp:270
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_for_netcon
void visit_for_netcon(const ast::ForNetcon &node) override
visit node of type ast::ForNetcon
Definition: codegen_coreneuron_cpp_visitor.cpp:3044
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_compute_functions
void print_compute_functions() override
Print all compute functions for every backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:2974
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_conductance_kernel
void print_nrn_cur_conductance_kernel(const ast::BreakpointBlock &node) override
Print the nrn_cur kernel with NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2755
nmodl::codegen::Ion::is_intra_cell_conc
bool is_intra_cell_conc(const std::string &text) const
Check if variable name is internal cell concentration.
Definition: codegen_info.hpp:135
nmodl::codegen::BlockType::Watch
@ Watch
watch block
nmodl::codegen::CodegenCoreneuronCppVisitor::print_memory_allocation_routine
virtual void print_memory_allocation_routine() const
Print memory allocation routine.
Definition: codegen_coreneuron_cpp_visitor.cpp:315
@@ -3317,102 +3310,102 @@
nmodl::codegen::BlockType::NetReceive
@ NetReceive
net_receive block
nmodl::codegen::Ion::is_extra_cell_conc
bool is_extra_cell_conc(const std::string &text) const
Check if variable name is external cell concentration.
Definition: codegen_info.hpp:144
nmodl::codegen::CodegenCoreneuronCppVisitor::backend_name
std::string backend_name() const override
Name of the code generation backend.
Definition: codegen_coreneuron_cpp_visitor.cpp:53
-
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:141
+
nmodl::codegen::naming::NRN_INIT_METHOD
static constexpr char NRN_INIT_METHOD[]
nrn_init method in generated code
Definition: codegen_naming.hpp:144
nmodl::codegen::CodegenCoreneuronCppVisitor::print_rhs_d_shadow_variables
virtual void print_rhs_d_shadow_variables()
Print the setup method for setting matrix shadow vectors.
Definition: codegen_coreneuron_cpp_visitor.cpp:258
nmodl::ast::FunctionCall::get_arguments
const ExpressionVector & get_arguments() const noexcept
Getter for member variable FunctionCall::arguments.
Definition: function_call.hpp:166
nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_text
std::string process_verbatim_text(std::string const &text) override
Process a verbatim block for possible variable renaming.
Definition: codegen_coreneuron_cpp_visitor.cpp:602
-
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:171
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2546
-
nmodl::codegen::rename_net_receive_arguments
static void rename_net_receive_arguments(const ast::NetReceiveBlock &net_receive_node, const ast::Node &node)
Rename arguments to NET_RECEIVE block with corresponding pointer variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2310
+
nmodl::codegen::naming::THREAD_ARGS
static constexpr char THREAD_ARGS[]
verbatim name of the variable for nrn thread arguments
Definition: codegen_naming.hpp:174
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive
void print_net_receive()
Print net_receive function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2542
+
nmodl::codegen::rename_net_receive_arguments
static void rename_net_receive_arguments(const ast::NetReceiveBlock &net_receive_node, const ast::Node &node)
Rename arguments to NET_RECEIVE block with corresponding pointer variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2306
nmodl::codegen::CodegenCoreneuronCppVisitor::optimize_ion_variable_copies
bool optimize_ion_variable_copies() const override
Check if ion variable copies should be avoided.
Definition: codegen_coreneuron_cpp_visitor.cpp:310
nmodl::codegen::CodegenCoreneuronCppVisitor::print_top_verbatim_blocks
void print_top_verbatim_blocks()
Print top level (global scope) verbatim blocks.
Definition: codegen_coreneuron_cpp_visitor.cpp:346
nmodl::visitor::RenameVisitor
Blindly rename given variable to new name
Definition: rename_visitor.hpp:43
-
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:162
+
nmodl::codegen::naming::NRN_CUR_METHOD
static constexpr char NRN_CUR_METHOD[]
nrn_cur method in generated code
Definition: codegen_naming.hpp:165
codegen_utils.hpp
Implement utility functions for codegen visitors.
nmodl::codegen::naming::TQITEM_VARIABLE
static constexpr char TQITEM_VARIABLE[]
inbuilt neuron variable for tqitem process
Definition: codegen_naming.hpp:72
nmodl::visitor::RenameVisitor::set
void set(const std::string &old_name, std::string new_name)
Definition: rename_visitor.hpp:97
nmodl::collect_nodes
std::vector< std::shared_ptr< const ast::Ast > > collect_nodes(const ast::Ast &node, const std::vector< ast::AstNodeType > &types)
traverse node recursively and collect nodes of given types
Definition: visitor_utils.cpp:205
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_global_var_structure
void print_mechanism_global_var_structure(bool print_initializers) override
Print the structure that wraps all global variables used in the NMODL.
Definition: codegen_coreneuron_cpp_visitor.cpp:1060
defuse_analyze_visitor.hpp
Visitor to return Def-Use chain for a given variable in the block/node
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1994
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_constructor
void print_nrn_constructor() override
Print nrn_constructor function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1990
nmodl::codegen::CodegenCoreneuronCppVisitor::print_kernel_data_present_annotation_block_end
virtual void print_kernel_data_present_annotation_block_end()
Print matching block end of accelerator annotations for data presence on device.
Definition: codegen_coreneuron_cpp_visitor.cpp:203
nmodl::ast::BATYPE_SOLVE
@ BATYPE_SOLVE
Definition: ast_common.hpp:80
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2018
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_alloc
void print_nrn_alloc() override
Print nrn_alloc function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2014
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_matrix_shadow_reduction
virtual void print_nrn_cur_matrix_shadow_reduction()
Print the reduction to matrix elements from shadow vectors.
Definition: codegen_coreneuron_cpp_visitor.cpp:279
nmodl::codegen::CodegenCoreneuronCppVisitor::print_memb_list_getter
void print_memb_list_getter()
Print the getter method for returning membrane list from NrnThread.
Definition: codegen_coreneuron_cpp_visitor.cpp:735
- +
nmodl::codegen::naming::INST_GLOBAL_MEMBER
static constexpr char INST_GLOBAL_MEMBER[]
instance struct member pointing to the global variable structure
Definition: codegen_naming.hpp:99
nmodl::ast::AstNodeType::PROTECT_STATEMENT
@ PROTECT_STATEMENT
type of ast::ProtectStatement
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_variable_setup
void print_instance_variable_setup()
Print the function that initialize instance structure.
Definition: codegen_coreneuron_cpp_visitor.cpp:1655
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1865
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_instance_variable_setup
void print_instance_variable_setup()
Print the function that initialize instance structure.
Definition: codegen_coreneuron_cpp_visitor.cpp:1651
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_init
void print_nrn_init(bool skip_init_check=true)
Print the nrn_init function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:1861
nmodl::codegen::CodegenCoreneuronCppVisitor::get_variable_name
std::string get_variable_name(const std::string &name, bool use_instance=true) const override
Determine variable name in the structure of mechanism properties.
Definition: codegen_coreneuron_cpp_visitor.cpp:864
nmodl::symtab::syminfo::NmodlType
NmodlType
NMODL variable properties.
Definition: symbol_properties.hpp:116
nmodl::ast::BATYPE_BREAKPOINT
@ BATYPE_BREAKPOINT
Definition: ast_common.hpp:80
nmodl::codegen::CodegenCoreneuronCppVisitor::print_abort_routine
virtual void print_abort_routine() const
Print backend specific abort routine.
Definition: codegen_coreneuron_cpp_visitor.cpp:333
nmodl::ast::ForNetcon::get_parameters
const ArgumentVector & get_parameters() const noexcept override
Getter for member variable ForNetcon::parameters.
Definition: for_netcon.hpp:176
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2895
-
nmodl::codegen::CodegenCoreneuronCppVisitor::get_range_var_float_type
std::string get_range_var_float_type(const SymbolType &symbol)
Returns floating point type for given range variable symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:1639
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update
virtual void print_net_send_buffering_cnt_update() const
Print the code related to the update of NetSendBuffer_t cnt.
Definition: codegen_coreneuron_cpp_visitor.cpp:2448
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread related memory allocation and deallocation callbacks.
Definition: codegen_coreneuron_cpp_visitor.cpp:1456
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur
void print_nrn_cur() override
Print nrn_cur / current update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2891
+
nmodl::codegen::CodegenCoreneuronCppVisitor::get_range_var_float_type
std::string get_range_var_float_type(const SymbolType &symbol)
Returns floating point type for given range variable symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:1635
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_cnt_update
virtual void print_net_send_buffering_cnt_update() const
Print the code related to the update of NetSendBuffer_t cnt.
Definition: codegen_coreneuron_cpp_visitor.cpp:2444
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_thread_memory_callbacks
void print_thread_memory_callbacks()
Print thread related memory allocation and deallocation callbacks.
Definition: codegen_coreneuron_cpp_visitor.cpp:1452
nmodl::ast::DerivimplicitCallback
Represent a callback to NEURON's derivimplicit solver.
Definition: derivimplicit_callback.hpp:38
nmodl::codegen::ShadowUseStatement
Represents ion write statement during code generation.
Definition: codegen_cpp_visitor.hpp:166
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_buffering
void print_net_receive_buffering(bool need_mech_inst=true)
Print kernel for buffering net_receive events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2402
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_function_common_code
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_coreneuron_cpp_visitor.cpp:1814
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_buffering
void print_net_receive_buffering(bool need_mech_inst=true)
Print kernel for buffering net_receive events.
Definition: codegen_coreneuron_cpp_visitor.cpp:2398
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_function_common_code
virtual void print_global_function_common_code(BlockType type, const std::string &function_name="") override
Print common code for global functions like nrn_init, nrn_cur and nrn_state.
Definition: codegen_coreneuron_cpp_visitor.cpp:1810
nmodl::codegen::CodegenCoreneuronCppVisitor::functor_params
ParamVector functor_params() override
The parameters of the Newton solver "functor".
Definition: codegen_coreneuron_cpp_visitor.cpp:1032
logger.hpp
Implement logger based on spdlog library.
nmodl::codegen::IndexVariableInfo::is_vdata
bool is_vdata
if variable resides in vdata field of NrnThread typically true for bbcore pointer
Definition: codegen_cpp_visitor.hpp:133
nmodl::codegen::BlockType
BlockType
Helper to represent various block types.
Definition: codegen_cpp_visitor.hpp:56
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mechanism_register
void print_mechanism_register() override
Print the mechanism registration function.
Definition: codegen_coreneuron_cpp_visitor.cpp:1314
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_method_annotation
virtual void print_global_method_annotation()
Print backend specific global method annotation.
Definition: codegen_coreneuron_cpp_visitor.cpp:300
-
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:159
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_coreneuron_cpp_visitor.cpp:2830
+
nmodl::codegen::naming::NRN_STATE_METHOD
static constexpr char NRN_STATE_METHOD[]
nrn_state method in generated code
Definition: codegen_naming.hpp:162
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_kernel
void print_nrn_cur_kernel(const ast::BreakpointBlock &node) override
Print main body of nrn_cur function.
Definition: codegen_coreneuron_cpp_visitor.cpp:2826
config.h
Version information and units file path.
nmodl::codegen::CodegenCoreneuronCppVisitor::nrn_thread_internal_arguments
std::string nrn_thread_internal_arguments() override
Arguments for "_threadargs_" macro in neuron implementation.
Definition: codegen_coreneuron_cpp_visitor.cpp:564
nmodl::codegen::CodegenCoreneuronCppVisitor::print_device_atomic_capture_annotation
virtual void print_device_atomic_capture_annotation() const
Print pragma annotation for increase and capture of variable in automatic way.
Definition: codegen_coreneuron_cpp_visitor.cpp:154
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_derivimplicit_callback
void visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) override
visit node of type ast::DerivimplicitCallback
Definition: codegen_coreneuron_cpp_visitor.cpp:3040
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_get_memb_list
virtual void print_get_memb_list()
Print the target backend code for defining and checking a local Memb_list variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2381
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_derivimplicit_callback
void visit_derivimplicit_callback(const ast::DerivimplicitCallback &node) override
visit node of type ast::DerivimplicitCallback
Definition: codegen_coreneuron_cpp_visitor.cpp:3036
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_get_memb_list
virtual void print_get_memb_list()
Print the target backend code for defining and checking a local Memb_list variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:2377
nmodl::codegen::CodegenCoreneuronCppVisitor::print_num_variable_getter
void print_num_variable_getter()
Print the getter methods for float and integer variables count.
Definition: codegen_coreneuron_cpp_visitor.cpp:702
nmodl::ast::Ast::get_statement_block
virtual std::shared_ptr< StatementBlock > get_statement_block() const
Return associated statement block for the AST node.
Definition: ast.cpp:32
nmodl::codegen::CodegenCoreneuronCppVisitor::print_standard_includes
void print_standard_includes() override
Print standard C/C++ includes.
Definition: codegen_coreneuron_cpp_visitor.cpp:937
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_end
virtual void print_net_receive_loop_end()
Print the code for closing the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2397
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_receive_loop_end
virtual void print_net_receive_loop_end()
Print the code for closing the main net_receive loop.
Definition: codegen_coreneuron_cpp_visitor.cpp:2393
nmodl::ast::Block::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:388
nmodl::codegen::CodegenCoreneuronCppVisitor::print_mech_type_getter
void print_mech_type_getter()
Print the getter method for returning mechtype.
Definition: codegen_coreneuron_cpp_visitor.cpp:726
nmodl::ast::AfterBlock
Represents a AFTER block in NMODL.
Definition: after_block.hpp:51
nmodl::ast::Ast::is_before_block
virtual bool is_before_block() const noexcept
Check if the ast node is an instance of ast::BeforeBlock.
Definition: ast.cpp:152
nmodl::codegen::naming::NTHREAD_T_VARIABLE
static constexpr char NTHREAD_T_VARIABLE[]
t variable in neuron thread structure
Definition: codegen_naming.hpp:102
nmodl::codegen::CodegenCoreneuronCppVisitor::float_variable_name
std::string float_variable_name(const SymbolType &symbol, bool use_instance) const override
Determine the name of a float variable given its symbol.
Definition: codegen_coreneuron_cpp_visitor.cpp:810
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation
virtual void print_global_variable_device_update_annotation()
Print the pragma annotation to update global variables from host to the device.
Definition: codegen_coreneuron_cpp_visitor.cpp:1613
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_global_variable_device_update_annotation
virtual void print_global_variable_device_update_annotation()
Print the pragma annotation to update global variables from host to the device.
Definition: codegen_coreneuron_cpp_visitor.cpp:1609
rename_visitor.hpp
Blindly rename given variable to new name
nmodl::codegen::BlockType::State
@ State
derivative block
nmodl::codegen::CodegenCoreneuronCppVisitor::print_function_tables
void print_function_tables(const ast::FunctionTableBlock &node)
Print NMODL function_table in target backend code.
Definition: codegen_coreneuron_cpp_visitor.cpp:448
symtab_visitor.hpp
THIS FILE IS GENERATED AT BUILD TIME AND SHALL NOT BE EDITED.
nmodl::codegen::CodegenCoreneuronCppVisitor::add_variable_tqitem
void add_variable_tqitem(std::vector< IndexVariableInfo > &variables) override
Add the variable tqitem during get_int_variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:479
-
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
visit node of type ast::WatchStatement
Definition: codegen_coreneuron_cpp_visitor.cpp:3083
+
nmodl::codegen::CodegenCoreneuronCppVisitor::visit_watch_statement
void visit_watch_statement(const ast::WatchStatement &node) override
visit node of type ast::WatchStatement
Definition: codegen_coreneuron_cpp_visitor.cpp:3076
nmodl::codegen::CodegenCoreneuronCppVisitor::external_method_arguments
const std::string external_method_arguments() noexcept override
Arguments for external functions called from generated code.
Definition: codegen_coreneuron_cpp_visitor.cpp:529
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2796
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_cur_non_conductance_kernel
void print_nrn_cur_non_conductance_kernel() override
Print the nrn_cur kernel without NMODL conductance keyword provisions.
Definition: codegen_coreneuron_cpp_visitor.cpp:2792
nmodl::visitor::VarUsageVisitor::variable_used
bool variable_used(const ast::Node &node, std::string name)
Definition: var_usage_visitor.cpp:26
nmodl::codegen::CodegenCoreneuronCppVisitor::print_backend_includes
virtual void print_backend_includes()
Print backend specific includes (none needed for C++ backend)
Definition: codegen_coreneuron_cpp_visitor.cpp:305
nmodl::codegen::CodegenCoreneuronCppVisitor::process_verbatim_token
std::string process_verbatim_token(const std::string &token)
Process a token in a verbatim block for possible variable renaming.
Definition: codegen_coreneuron_cpp_visitor.cpp:82
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2686
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_nrn_state
void print_nrn_state() override
Print nrn_state / state update function definition.
Definition: codegen_coreneuron_cpp_visitor.cpp:2682
nmodl::codegen::CodegenCoreneuronCppVisitor::add_variable_point_process
void add_variable_point_process(std::vector< IndexVariableInfo > &variables) override
Add the variable point_process during get_int_variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:493
-
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:147
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_coreneuron_cpp_visitor.cpp:3009
+
nmodl::codegen::naming::NRN_DESTRUCTOR_METHOD
static constexpr char NRN_DESTRUCTOR_METHOD[]
nrn_destructor method in generated code
Definition: codegen_naming.hpp:150
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_codegen_routines
void print_codegen_routines() override
Print entry point to code generation.
Definition: codegen_coreneuron_cpp_visitor.cpp:3005
nmodl::codegen::BlockType::Initial
@ Initial
initial block
- -
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:174
+ +
nmodl::codegen::naming::THREAD_ARGS_PROTO
static constexpr char THREAD_ARGS_PROTO[]
verbatim name of the variable for nrn thread arguments in prototype
Definition: codegen_naming.hpp:177
nmodl::codegen::BlockType::BeforeAfter
@ BeforeAfter
before / after block
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_grow
virtual void print_net_send_buffering_grow()
Print statement that grows NetSendBuffering_t structure if needed.
Definition: codegen_coreneuron_cpp_visitor.cpp:2453
-
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:150
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buffering_grow
virtual void print_net_send_buffering_grow()
Print statement that grows NetSendBuffering_t structure if needed.
Definition: codegen_coreneuron_cpp_visitor.cpp:2449
+
nmodl::codegen::naming::NRN_PRIVATE_CONSTRUCTOR_METHOD
constexpr char NRN_PRIVATE_CONSTRUCTOR_METHOD[]
nrn_private_constructor method in generated code
Definition: codegen_naming.hpp:153
nmodl::ast::Ast::get_node_name
virtual std::string get_node_name() const
Return name of of the node.
Definition: ast.cpp:28
nmodl::codegen::CodegenCoreneuronCppVisitor::print_net_send_buf_update_to_host
virtual void print_net_send_buf_update_to_host() const
Print the code to update NetSendBuffer_t from device to host.
Definition: codegen_coreneuron_cpp_visitor.cpp:164
all.hpp
Auto generated AST classes declaration.
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_coreneuron_cpp_visitor.cpp:2950
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_data_structures
void print_data_structures(bool print_initializers) override
Print all classes.
Definition: codegen_coreneuron_cpp_visitor.cpp:2946
nmodl::codegen::CodegenCoreneuronCppVisitor::replace_if_verbatim_variable
std::string replace_if_verbatim_variable(std::string name)
Replace commonly used verbatim variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:573
-
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_constructor
virtual void print_ion_var_constructor(const std::vector< std::string > &members)
Print constructor of ion variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:1591
+
nmodl::codegen::CodegenCoreneuronCppVisitor::print_ion_var_constructor
virtual void print_ion_var_constructor(const std::vector< std::string > &members)
Print constructor of ion variables.
Definition: codegen_coreneuron_cpp_visitor.cpp:1587
nmodl::codegen::CodegenCoreneuronCppVisitor::position_of_float_var
int position_of_float_var(const std::string &name) const override
Determine the position in the data array for a given float variable.
Definition: codegen_coreneuron_cpp_visitor.cpp:68
nmodl::codegen::CodegenCppVisitor::ParamVector
std::vector< std::tuple< std::string, std::string, std::string, std::string > > ParamVector
A vector of parameters represented by a 4-tuple of strings:
Definition: codegen_cpp_visitor.hpp:307
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180
nmodl::pybind_wrappers::pybind_wrap_api::solve_linear_system
decltype(&call_solve_linear_system) solve_linear_system
Definition: wrapper.hpp:51
nmodl::visitor::SympySolverVisitor::to_nmodl_for_sympy
static std::string to_nmodl_for_sympy(ast::Ast &node)
return NMODL string version of node, excluding any units
Definition: sympy_solver_visitor.hpp:90
nmodl::pybind_wrappers::EmbeddedPythonLoader::get_instance
static EmbeddedPythonLoader & get_instance()
Construct (if not already done) and get the only instance of this class.
Definition: pyembed.hpp:29
nmodl::ast::Node
Base class for all AST node.
Definition: node.hpp:40
-
nmodl::visitor::SympySolverVisitor::visit_lin_equation
void visit_lin_equation(ast::LinEquation &node) override
visit node of type ast::LinEquation
Definition: sympy_solver_visitor.cpp:574
+
nmodl::visitor::SympySolverVisitor::visit_lin_equation
void visit_lin_equation(ast::LinEquation &node) override
visit node of type ast::LinEquation
Definition: sympy_solver_visitor.cpp:575
nmodl::to_nmodl
std::string to_nmodl(const ast::Ast &node, const std::set< ast::AstNodeType > &exclude_types)
Given AST node, return the NMODL string representation.
Definition: visitor_utils.cpp:233
nmodl::ast::LinEquation::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:6948
-
nmodl::visitor::SympySolverVisitor::visit_linear_block
void visit_linear_block(ast::LinearBlock &node) override
visit node of type ast::LinearBlock
Definition: sympy_solver_visitor.cpp:588
+
nmodl::visitor::SympySolverVisitor::visit_linear_block
void visit_linear_block(ast::LinearBlock &node) override
visit node of type ast::LinearBlock
Definition: sympy_solver_visitor.cpp:589
nmodl::ast::Conserve::get_react
std::shared_ptr< Expression > get_react() const noexcept
Getter for member variable Conserve::react.
Definition: conserve.hpp:159
symbol.hpp
Implement class to represent a symbol in Symbol Table.
nmodl::visitor::SympyReplaceSolutionsVisitor::replaced_statements_end
int replaced_statements_end() const
idx (in the new statementVector) of the last statement that was added.
Definition: sympy_replace_solutions_visitor.hpp:236
@@ -798,10 +799,10 @@
nmodl::visitor::SympyReplaceSolutionsVisitor
Replace statements in node with pre_solve_statements, tmp_statements, and solutions.
Definition: sympy_replace_solutions_visitor.hpp:212
nmodl::ast::Ast::is_non_linear_block
virtual bool is_non_linear_block() const noexcept
Check if the ast node is an instance of ast::NonLinearBlock.
Definition: ast.cpp:136
nmodl::visitor::SympySolverVisitor::replaceAll
static std::string & replaceAll(std::string &context, const std::string &from, const std::string &to)
Function used by SympySolverVisitor::filter_X to replace the name X in a std::string to X_operator.
Definition: sympy_solver_visitor.cpp:153
-
nmodl::visitor::SympySolverVisitor::visit_conserve
void visit_conserve(ast::Conserve &node) override
visit node of type ast::Conserve
Definition: sympy_solver_visitor.cpp:469
+
nmodl::visitor::SympySolverVisitor::visit_conserve
void visit_conserve(ast::Conserve &node) override
visit node of type ast::Conserve
Definition: sympy_solver_visitor.cpp:470
nmodl::codegen::naming::CNEXP_METHOD
static constexpr char CNEXP_METHOD[]
cnexp method in nmodl
Definition: codegen_naming.hpp:30
-
nmodl::visitor::SympySolverVisitor::visit_non_linear_block
void visit_non_linear_block(ast::NonLinearBlock &node) override
visit node of type ast::NonLinearBlock
Definition: sympy_solver_visitor.cpp:616
+
nmodl::visitor::SympySolverVisitor::visit_non_linear_block
void visit_non_linear_block(ast::NonLinearBlock &node) override
visit node of type ast::NonLinearBlock
Definition: sympy_solver_visitor.cpp:617
nmodl::ast::StatementBlock::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:3158
nmodl::ast::Conserve
Represent CONSERVE statement in NMODL.
Definition: conserve.hpp:38
nmodl::visitor::SympyReplaceSolutionsVisitor::replaced_statements_begin
int replaced_statements_begin() const
idx (in the new statementVector) of the first statement that was added.
Definition: sympy_replace_solutions_visitor.hpp:231
@@ -836,20 +837,20 @@
visitor_utils.hpp
Utility functions for visitors implementation.
nmodl::ast::DerivativeBlock::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:3249
nmodl::ast::LinEquation::get_left_linxpression
std::shared_ptr< Expression > get_left_linxpression() const noexcept
Getter for member variable LinEquation::left_linxpression.
Definition: lin_equation.hpp:159
-
nmodl::visitor::SympySolverVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: sympy_solver_visitor.cpp:637
+
nmodl::visitor::SympySolverVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: sympy_solver_visitor.cpp:638
nmodl::visitor::SympySolverVisitor::function_calls
std::set< std::string > function_calls
custom function calls used in ODE block
Definition: sympy_solver_visitor.hpp:114
nmodl::pybind_wrappers::pybind_wrap_api::diffeq_solver
decltype(&call_diffeq_solver) diffeq_solver
Definition: wrapper.hpp:52
nmodl::visitor::SympySolverVisitor::block_with_expression_statements
ast::StatementBlock * block_with_expression_statements
block where expression statements appear (to check there is only one)
Definition: sympy_solver_visitor.hpp:133
nmodl::visitor::SympySolverVisitor::replace_diffeq_expression
static void replace_diffeq_expression(ast::DiffEqExpression &expr, const std::string &new_expr)
replace binary expression with new expression provided as string
Definition: sympy_solver_visitor.cpp:83
nmodl::pybind_wrappers::pybind_wrap_api::solve_nonlinear_system
decltype(&call_solve_nonlinear_system) solve_nonlinear_system
Definition: wrapper.hpp:50
-
nmodl::visitor::SympySolverVisitor::solve_non_linear_system
void solve_non_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve non-linear system (for "derivimplicit", "sparse" and "NONLINEAR")
Definition: sympy_solver_visitor.cpp:358
+
nmodl::visitor::SympySolverVisitor::solve_non_linear_system
void solve_non_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve non-linear system (for "derivimplicit", "sparse" and "NONLINEAR")
Definition: sympy_solver_visitor.cpp:359
nmodl::ast::LinearBlock::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:3362
nmodl::pybind_wrappers::EmbeddedPythonLoader::api
const pybind_wrap_api & api()
Get a pointer to the pybind_wrap_api struct.
Definition: pyembed.cpp:135
nmodl::symtab::syminfo::to_string
std::string to_string(const T &obj)
Definition: symbol_properties.hpp:279
nmodl::ast::Program::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:12902
-
nmodl::visitor::SympySolverVisitor::visit_var_name
void visit_var_name(ast::VarName &node) override
visit node of type ast::VarName
Definition: sympy_solver_visitor.cpp:378
-
nmodl::visitor::SympySolverVisitor::visit_expression_statement
void visit_expression_statement(ast::ExpressionStatement &node) override
visit node of type ast::ExpressionStatement
Definition: sympy_solver_visitor.cpp:630
-
nmodl::visitor::SympySolverVisitor::solve_linear_system
void solve_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve linear system (for "LINEAR")
Definition: sympy_solver_visitor.cpp:305
+
nmodl::visitor::SympySolverVisitor::visit_var_name
void visit_var_name(ast::VarName &node) override
visit node of type ast::VarName
Definition: sympy_solver_visitor.cpp:379
+
nmodl::visitor::SympySolverVisitor::visit_expression_statement
void visit_expression_statement(ast::ExpressionStatement &node) override
visit node of type ast::ExpressionStatement
Definition: sympy_solver_visitor.cpp:631
+
nmodl::visitor::SympySolverVisitor::solve_linear_system
void solve_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve linear system (for "LINEAR")
Definition: sympy_solver_visitor.cpp:306
nmodl::ast::AstNodeType::SOLVE_BLOCK
@ SOLVE_BLOCK
type of ast::SolveBlock
nmodl::ast::DiffEqExpression::get_expression
std::shared_ptr< BinaryExpression > get_expression() const noexcept
Getter for member variable DiffEqExpression::expression.
Definition: diff_eq_expression.hpp:143
nmodl::visitor::SympySolverVisitor::state_vars_in_block
std::set< std::string > state_vars_in_block
set of state variables used in block
Definition: sympy_solver_visitor.hpp:151
@@ -870,7 +871,7 @@
nmodl::ast::ExpressionStatement::visit_children
void visit_children(visitor::Visitor &v) override
visit children i.e.
Definition: ast.cpp:9030
nmodl::ast::NonLinEquation::get_rhs
std::shared_ptr< Expression > get_rhs() const noexcept
Getter for member variable NonLinEquation::rhs.
Definition: non_lin_equation.hpp:168
nmodl::ast::StatementBlock
Represents block encapsulating list of statements.
Definition: statement_block.hpp:53
-
nmodl::visitor::SympySolverVisitor::visit_non_lin_equation
void visit_non_lin_equation(ast::NonLinEquation &node) override
visit node of type ast::NonLinEquation
Definition: sympy_solver_visitor.cpp:602
+
nmodl::visitor::SympySolverVisitor::visit_non_lin_equation
void visit_non_lin_equation(ast::NonLinEquation &node) override
visit node of type ast::NonLinEquation
Definition: sympy_solver_visitor.cpp:603
nmodl::symtab::syminfo::NmodlType
NmodlType
NMODL variable properties.
Definition: symbol_properties.hpp:116
nmodl::visitor::create_statement_block
std::shared_ptr< StatementBlock > create_statement_block(const std::vector< std::string > &code_statements)
Convert given code statement (in string format) to corresponding ast node.
Definition: visitor_utils.cpp:155
nmodl::visitor::SympySolverVisitor::elimination
bool elimination
optionally do CSE (common subexpression elimination) for sparse solver
Definition: sympy_solver_visitor.hpp:164
@@ -880,7 +881,7 @@
nmodl::ast::NonLinearBlock
Represents NONLINEAR block in the NMODL.
Definition: non_linear_block.hpp:50
logger.hpp
Implement logger based on spdlog library.
nmodl::visitor::SympySolverVisitor::current_statement_block
ast::StatementBlock * current_statement_block
current statement block being visited
Definition: sympy_solver_visitor.hpp:130
-
nmodl::visitor::SympySolverVisitor::visit_derivative_block
void visit_derivative_block(ast::DerivativeBlock &node) override
visit node of type ast::DerivativeBlock
Definition: sympy_solver_visitor.cpp:493
+
nmodl::visitor::SympySolverVisitor::visit_derivative_block
void visit_derivative_block(ast::DerivativeBlock &node) override
visit node of type ast::DerivativeBlock
Definition: sympy_solver_visitor.cpp:494
nmodl::pybind_wrappers
Definition: pyembed.cpp:25
nmodl::ast::Ast::is_linear_block
virtual bool is_linear_block() const noexcept
Check if the ast node is an instance of ast::LinearBlock.
Definition: ast.cpp:134
nmodl::codegen::naming::EULER_METHOD
static constexpr char EULER_METHOD[]
euler method in nmodl
Definition: codegen_naming.hpp:27
@@ -890,7 +891,7 @@
nmodl::ast::Program::get_symbol_table
symtab::SymbolTable * get_symbol_table() const override
Return associated symbol table for the current ast node.
Definition: program.hpp:153
nmodl::visitor::SympySolverVisitor::expression_statements
std::unordered_set< ast::Statement * > expression_statements
expression statements appearing in the block (these can be of type DiffEqExpression,...
Definition: sympy_solver_visitor.hpp:121
nmodl::ast::NonLinEquation::get_lhs
std::shared_ptr< Expression > get_lhs() const noexcept
Getter for member variable NonLinEquation::lhs.
Definition: non_lin_equation.hpp:159
-
nmodl::visitor::SympySolverVisitor::visit_program
void visit_program(ast::Program &node) override
visit node of type ast::Program
Definition: sympy_solver_visitor.cpp:644
+
nmodl::visitor::SympySolverVisitor::visit_program
void visit_program(ast::Program &node) override
visit node of type ast::Program
Definition: sympy_solver_visitor.cpp:645
nmodl::visitor::SympySolverVisitor::eq_system
std::vector< std::string > eq_system
vector of {ODE, linear eq, non-linear eq} system to solve
Definition: sympy_solver_visitor.hpp:139
nmodl::ast::Ast::get_statement_block
virtual std::shared_ptr< StatementBlock > get_statement_block() const
Return associated statement block for the AST node.
Definition: ast.cpp:32
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
@@ -905,7 +906,7 @@
all.hpp
Auto generated AST classes declaration.
nmodl::ast::VarName::get_node_name
std::string get_node_name() const override
Return name of the node.
Definition: ast.cpp:1120
-
nmodl::visitor::SympySolverVisitor::visit_diff_eq_expression
void visit_diff_eq_expression(ast::DiffEqExpression &node) override
visit node of type ast::DiffEqExpression
Definition: sympy_solver_visitor.cpp:398
+
nmodl::visitor::SympySolverVisitor::visit_diff_eq_expression
void visit_diff_eq_expression(ast::DiffEqExpression &node) override
visit node of type ast::DiffEqExpression
Definition: sympy_solver_visitor.cpp:399
nmodl::visitor::SympySolverVisitor::to_nmodl_for_sympy
static std::string to_nmodl_for_sympy(ast::Ast &node)
return NMODL string version of node, excluding any units
Definition: sympy_solver_visitor.hpp:90
nmodl::ast::Node
Base class for all AST node.
Definition: node.hpp:40
-
nmodl::visitor::SympySolverVisitor::visit_lin_equation
void visit_lin_equation(ast::LinEquation &node) override
visit node of type ast::LinEquation
Definition: sympy_solver_visitor.cpp:574
+
nmodl::visitor::SympySolverVisitor::visit_lin_equation
void visit_lin_equation(ast::LinEquation &node) override
visit node of type ast::LinEquation
Definition: sympy_solver_visitor.cpp:575
nmodl::to_nmodl
std::string to_nmodl(const ast::Ast &node, const std::set< ast::AstNodeType > &exclude_types)
Given AST node, return the NMODL string representation.
Definition: visitor_utils.cpp:233
-
nmodl::visitor::SympySolverVisitor::visit_linear_block
void visit_linear_block(ast::LinearBlock &node) override
visit node of type ast::LinearBlock
Definition: sympy_solver_visitor.cpp:588
+
nmodl::visitor::SympySolverVisitor::visit_linear_block
void visit_linear_block(ast::LinearBlock &node) override
visit node of type ast::LinearBlock
Definition: sympy_solver_visitor.cpp:589
symbol.hpp
Implement class to represent a symbol in Symbol Table.
nmodl::ast::DiffEqExpression
Represents differential equation in DERIVATIVE block.
Definition: diff_eq_expression.hpp:38
nmodl::ast::Ast
Base class for all Abstract Syntax Tree node types.
Definition: ast.hpp:69
nmodl::visitor::SympySolverVisitor
Visitor for systems of algebraic and differential equations
Definition: sympy_solver_visitor.hpp:58
nmodl::visitor::SympySolverVisitor::replaceAll
static std::string & replaceAll(std::string &context, const std::string &from, const std::string &to)
Function used by SympySolverVisitor::filter_X to replace the name X in a std::string to X_operator.
Definition: sympy_solver_visitor.cpp:153
-
nmodl::visitor::SympySolverVisitor::visit_conserve
void visit_conserve(ast::Conserve &node) override
visit node of type ast::Conserve
Definition: sympy_solver_visitor.cpp:469
+
nmodl::visitor::SympySolverVisitor::visit_conserve
void visit_conserve(ast::Conserve &node) override
visit node of type ast::Conserve
Definition: sympy_solver_visitor.cpp:470
-
nmodl::visitor::SympySolverVisitor::visit_non_linear_block
void visit_non_linear_block(ast::NonLinearBlock &node) override
visit node of type ast::NonLinearBlock
Definition: sympy_solver_visitor.cpp:616
+
nmodl::visitor::SympySolverVisitor::visit_non_linear_block
void visit_non_linear_block(ast::NonLinearBlock &node) override
visit node of type ast::NonLinearBlock
Definition: sympy_solver_visitor.cpp:617
nmodl::ast::Conserve
Represent CONSERVE statement in NMODL.
Definition: conserve.hpp:38
nmodl::visitor::SympySolverVisitor::solve_method
std::string solve_method
method specified in solve block
Definition: sympy_solver_visitor.hpp:136
nmodl::ast::StatementVector
std::vector< std::shared_ptr< Statement > > StatementVector
Definition: ast_decl.hpp:298
@@ -317,14 +317,14 @@
nmodl::visitor::SympySolverVisitor::init_state_vars_vector
void init_state_vars_vector(const ast::Node *node)
construct vector from set of state vars in correct order
Definition: sympy_solver_visitor.cpp:55
nmodl::visitor::SympySolverVisitor::SMALL_LINEAR_SYSTEM_MAX_STATES
int SMALL_LINEAR_SYSTEM_MAX_STATES
max number of state vars allowed for small system linear solver
Definition: sympy_solver_visitor.hpp:167
visitor_utils.hpp
Utility functions for visitors implementation.
-
nmodl::visitor::SympySolverVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: sympy_solver_visitor.cpp:637
+
nmodl::visitor::SympySolverVisitor::visit_statement_block
void visit_statement_block(ast::StatementBlock &node) override
visit node of type ast::StatementBlock
Definition: sympy_solver_visitor.cpp:638
nmodl::visitor::SympySolverVisitor::function_calls
std::set< std::string > function_calls
custom function calls used in ODE block
Definition: sympy_solver_visitor.hpp:114
nmodl::visitor::SympySolverVisitor::block_with_expression_statements
ast::StatementBlock * block_with_expression_statements
block where expression statements appear (to check there is only one)
Definition: sympy_solver_visitor.hpp:133
nmodl::visitor::SympySolverVisitor::replace_diffeq_expression
static void replace_diffeq_expression(ast::DiffEqExpression &expr, const std::string &new_expr)
replace binary expression with new expression provided as string
Definition: sympy_solver_visitor.cpp:83
-
nmodl::visitor::SympySolverVisitor::solve_non_linear_system
void solve_non_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve non-linear system (for "derivimplicit", "sparse" and "NONLINEAR")
Definition: sympy_solver_visitor.cpp:358
-
nmodl::visitor::SympySolverVisitor::visit_var_name
void visit_var_name(ast::VarName &node) override
visit node of type ast::VarName
Definition: sympy_solver_visitor.cpp:378
-
nmodl::visitor::SympySolverVisitor::visit_expression_statement
void visit_expression_statement(ast::ExpressionStatement &node) override
visit node of type ast::ExpressionStatement
Definition: sympy_solver_visitor.cpp:630
-
nmodl::visitor::SympySolverVisitor::solve_linear_system
void solve_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve linear system (for "LINEAR")
Definition: sympy_solver_visitor.cpp:305
+
nmodl::visitor::SympySolverVisitor::solve_non_linear_system
void solve_non_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve non-linear system (for "derivimplicit", "sparse" and "NONLINEAR")
Definition: sympy_solver_visitor.cpp:359
+
nmodl::visitor::SympySolverVisitor::visit_var_name
void visit_var_name(ast::VarName &node) override
visit node of type ast::VarName
Definition: sympy_solver_visitor.cpp:379
+
nmodl::visitor::SympySolverVisitor::visit_expression_statement
void visit_expression_statement(ast::ExpressionStatement &node) override
visit node of type ast::ExpressionStatement
Definition: sympy_solver_visitor.cpp:631
+
nmodl::visitor::SympySolverVisitor::solve_linear_system
void solve_linear_system(const ast::Node &node, const std::vector< std::string > &pre_solve_statements={})
solve linear system (for "LINEAR")
Definition: sympy_solver_visitor.cpp:306
nmodl::visitor::AstVisitor
Concrete visitor for all AST classes.
Definition: ast_visitor.hpp:37
nmodl::visitor::SympySolverVisitor::state_vars_in_block
std::set< std::string > state_vars_in_block
set of state variables used in block
Definition: sympy_solver_visitor.hpp:151
nmodl::ast::AstNodeType::UNIT_DEF
@ UNIT_DEF
type of ast::UnitDef
@@ -338,23 +338,23 @@
nmodl::visitor::SympySolverVisitor::construct_eigen_solver_block
void construct_eigen_solver_block(const std::vector< std::string > &pre_solve_statements, const std::vector< std::string > &solutions, bool linear)
construct solver block
Definition: sympy_solver_visitor.cpp:177
nmodl::ast::AstNodeType::UNIT
@ UNIT
type of ast::Unit
nmodl::ast::StatementBlock
Represents block encapsulating list of statements.
Definition: statement_block.hpp:53
-
nmodl::visitor::SympySolverVisitor::visit_non_lin_equation
void visit_non_lin_equation(ast::NonLinEquation &node) override
visit node of type ast::NonLinEquation
Definition: sympy_solver_visitor.cpp:602
+
nmodl::visitor::SympySolverVisitor::visit_non_lin_equation
void visit_non_lin_equation(ast::NonLinEquation &node) override
visit node of type ast::NonLinEquation
Definition: sympy_solver_visitor.cpp:603
nmodl::visitor::SympySolverVisitor::elimination
bool elimination
optionally do CSE (common subexpression elimination) for sparse solver
Definition: sympy_solver_visitor.hpp:164
nmodl::ast::LinearBlock
Represents LINEAR block in the NMODL.
Definition: linear_block.hpp:53
nmodl::visitor::SympySolverVisitor::last_expression_statement
ast::ExpressionStatement * last_expression_statement
last expression statement visited (to know where to insert solutions in statement block)
Definition: sympy_solver_visitor.hpp:127
nmodl::ast::NonLinearBlock
Represents NONLINEAR block in the NMODL.
Definition: non_linear_block.hpp:50
nmodl::visitor::SympySolverVisitor::current_statement_block
ast::StatementBlock * current_statement_block
current statement block being visited
Definition: sympy_solver_visitor.hpp:130
nmodl::visitor::SympySolverVisitor::SympySolverVisitor
SympySolverVisitor(bool use_pade_approx=false, bool elimination=true, int SMALL_LINEAR_SYSTEM_MAX_STATES=3)
Definition: sympy_solver_visitor.hpp:170
-
nmodl::visitor::SympySolverVisitor::visit_derivative_block
void visit_derivative_block(ast::DerivativeBlock &node) override
visit node of type ast::DerivativeBlock
Definition: sympy_solver_visitor.cpp:493
+
nmodl::visitor::SympySolverVisitor::visit_derivative_block
void visit_derivative_block(ast::DerivativeBlock &node) override
visit node of type ast::DerivativeBlock
Definition: sympy_solver_visitor.cpp:494
nmodl::visitor::SympySolverVisitor::expression_statements
std::unordered_set< ast::Statement * > expression_statements
expression statements appearing in the block (these can be of type DiffEqExpression,...
Definition: sympy_solver_visitor.hpp:121
-
nmodl::visitor::SympySolverVisitor::visit_program
void visit_program(ast::Program &node) override
visit node of type ast::Program
Definition: sympy_solver_visitor.cpp:644
+
nmodl::visitor::SympySolverVisitor::visit_program
void visit_program(ast::Program &node) override
visit node of type ast::Program
Definition: sympy_solver_visitor.cpp:645
nmodl::visitor::SympySolverVisitor::eq_system
std::vector< std::string > eq_system
vector of {ODE, linear eq, non-linear eq} system to solve
Definition: sympy_solver_visitor.hpp:139
nmodl::ast::Program
Represents top level AST node for whole NMODL input.
Definition: program.hpp:39
nmodl::visitor::SympySolverVisitor::eq_system_is_valid
bool eq_system_is_valid
only solve eq_system system of equations if this is true:
Definition: sympy_solver_visitor.hpp:142
nmodl::visitor::SympySolverVisitor::current_expression_statement
ast::ExpressionStatement * current_expression_statement
current expression statement being visited (to track ODEs / (non)lineqs)
Definition: sympy_solver_visitor.hpp:124
nmodl::visitor::SympySolverVisitor::check_expr_statements_in_same_block
void check_expr_statements_in_same_block()
raise error if kinetic/ode/(non)linear statements are spread over multiple blocks
Definition: sympy_solver_visitor.cpp:92
-
nmodl::visitor::SympySolverVisitor::visit_diff_eq_expression
void visit_diff_eq_expression(ast::DiffEqExpression &node) override
visit node of type ast::DiffEqExpression
Definition: sympy_solver_visitor.cpp:398
+
nmodl::visitor::SympySolverVisitor::visit_diff_eq_expression
void visit_diff_eq_expression(ast::DiffEqExpression &node) override
visit node of type ast::DiffEqExpression
Definition: sympy_solver_visitor.cpp:399
ast_visitor.hpp
Concrete visitor for all AST classes.
diff --git a/doxygen/symtab__visitor__helper_8hpp_source.html b/doxygen/symtab__visitor__helper_8hpp_source.html index d1916a767..ac75f4dc5 100644 --- a/doxygen/symtab__visitor__helper_8hpp_source.html +++ b/doxygen/symtab__visitor__helper_8hpp_source.html @@ -431,7 +431,7 @@
nmodl::ast::Ast::is_useion
virtual bool is_useion() const noexcept
Check if the ast node is an instance of ast::Useion.
Definition: ast.cpp:262
nmodl::ast::ParamAssign::get_value
std::shared_ptr< Number > get_value() const noexcept
Getter for member variable ParamAssign::value.
Definition: param_assign.hpp:170
-
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:177
+
nmodl::codegen::naming::ION_VARNAME_PREFIX
static constexpr char ION_VARNAME_PREFIX[]
prefix for ion variable
Definition: codegen_naming.hpp:180