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Hello, I am trying to run code below:
# Download GISTIC results lastanalyzedate <- getFirehoseAnalyzeDates(1) gistic <- getFirehoseData("GBM",gistic2Date = lastanalyzedate) # get GISTIC results gistic.allbygene <- getData(gistic, type = "GISTIC", platform = "AllByGene")
I got an error like this: Error in getData(gistic, type = "GISTIC", platform = "AllByGene") : No data available for that type
I also tried to view gistic by view(gistic), but got another error: Error in if (more || nchar(output) > 80) { : missing value where TRUE/FALSE needed
I am using R:3.5.1 and RStudio:1.1.456 in Windows10 system.
Thank you.
The text was updated successfully, but these errors were encountered:
It seems they updated the package. Thanks for pointing it out. The updated code is below.
library(RTCGAToolbox) lastanalyzedate <- getFirehoseAnalyzeDates(1) gistic <- getFirehoseData("GBM",GISTIC = TRUE, gistic2Date = lastanalyzedate) # get GISTIC results gistic.allbygene <- getData(gistic, type = "GISTIC", platform = "AllByGene") gistic.thresholedbygene <- getData(gistic, type = "GISTIC", platform = "ThresholdedByGene")
Sorry for the late reply. I did not get notified.
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Hello, I am trying to run code below:
I got an error like this:
Error in getData(gistic, type = "GISTIC", platform = "AllByGene") :
No data available for that type
I also tried to view gistic by view(gistic), but got another error:
Error in if (more || nchar(output) > 80) { :
missing value where TRUE/FALSE needed
I am using R:3.5.1 and RStudio:1.1.456 in Windows10 system.
Thank you.
The text was updated successfully, but these errors were encountered: