diff --git a/generated/vjcontobioc2024.container b/generated/vjcontobioc2024.container new file mode 100644 index 0000000..ef5bfc8 --- /dev/null +++ b/generated/vjcontobioc2024.container @@ -0,0 +1 @@ +ghcr.io/vjcitn/ontoprocws:latest diff --git a/generated/workshop-values-vjcontobioc2024.yaml b/generated/workshop-values-vjcontobioc2024.yaml new file mode 100644 index 0000000..5a73e52 --- /dev/null +++ b/generated/workshop-values-vjcontobioc2024.yaml @@ -0,0 +1,35 @@ + /galaxy/server/tools/interactive/biocworkshop_vjcontobioc2024.xml: + useSecret: false + applyToJob: true + applyToSetupJob: true + applyToWeb: true + applyToWorkflow: true + applyToNginx: true + tpl: false + content: | + + Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN + + ghcr.io/vjcitn/ontoprocws:latest + + + + 8787 + + + + true + $__history_id__ + $__galaxy_url__ + $__galaxy_url__ + + + export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/ontoProcWS/vignettes/owlents.Rmd' ]; then echo '/home/rstudio/ontoProcWS/vignettes/owlents.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/owlents.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init + + + + + + + This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/vjcitn/ontoProcWS. + diff --git a/generated/workshop-values.yaml b/generated/workshop-values.yaml index 2e4d564..ee03988 100644 --- a/generated/workshop-values.yaml +++ b/generated/workshop-values.yaml @@ -1,5 +1,5 @@ extraFileMappings: - /galaxy/server/tools/interactive/biocworkshop_eurobioc2024isee.xml: + /galaxy/server/tools/interactive/biocworkshop_vjcontobioc2024.xml: useSecret: false applyToJob: true applyToSetupJob: true @@ -8,13 +8,13 @@ extraFileMappings: applyToNginx: true tpl: false content: | - - Interactive SummarizedExperiment Explorer + + Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN - ghcr.io/isee/iseedemoeurobioc2024:latest + ghcr.io/vjcitn/ontoprocws:latest - + 8787 @@ -25,12 +25,12 @@ extraFileMappings: $__galaxy_url__ - export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/iSEEDemoEuroBioC2024/vignettes/workshop_isee_extension.Rmd' ]; then echo '/home/rstudio/iSEEDemoEuroBioC2024/vignettes/workshop_isee_extension.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/workshop_isee_extension.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init + export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/ontoProcWS/vignettes/owlents.Rmd' ]; then echo '/home/rstudio/ontoProcWS/vignettes/owlents.Rmd' > /tmp/startfile; else echo '/home/rstudio/vignettes/owlents.Rmd' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init - This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/iSEE/iSEEDemoEuroBioC2024. + This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/vjcitn/ontoProcWS.