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persistent cache for result of src_organism()? #4

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vjcitn opened this issue Feb 5, 2017 · 1 comment
Open

persistent cache for result of src_organism()? #4

vjcitn opened this issue Feb 5, 2017 · 1 comment

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@vjcitn
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vjcitn commented Feb 5, 2017

From the current vignette:

Running src_organism() without a given path will save the sqlite file to a tempdir():

...

It might be more convenient if the default behavior was to write the sqlite into a folder
like the one used for AnnotationHub, with src_organism checking for a relevant database
when invoked. It takes a bit of time to build the database, and if I understand the default behavior correctly, it will be lost when the session ends.

@mtmorgan
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mtmorgan commented Feb 5, 2017

Yes, that's the intention when BiocFileCache (@lshep) (svn repository; your own credentials or readonly / readonly for username / password) becomes available.

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