From 9b5a04d5724015d5e5ac2e1e51fb377d450c4181 Mon Sep 17 00:00:00 2001 From: De Date: Wed, 20 Dec 2023 16:20:51 +0100 Subject: [PATCH] Added comment for parameters included --- Output/RDF_Kin_Data_2022-Dec.ttl | 7 +++++++ createRDFKinData.py | 7 +++++++ 2 files changed, 14 insertions(+) diff --git a/Output/RDF_Kin_Data_2022-Dec.ttl b/Output/RDF_Kin_Data_2022-Dec.ttl index 75747ae..f3fd5da 100644 --- a/Output/RDF_Kin_Data_2022-Dec.ttl +++ b/Output/RDF_Kin_Data_2022-Dec.ttl @@ -20,13 +20,20 @@ @prefix bioregistry: . wdt:P2076 sio:SIO_000028 wd:Q25267 . +#Temperature hasUnit degree Celcius (Wikidata Q25267) SER:hasKm sio:SIO_000028 wd:Q105687351 . +#Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351) SER:hasKm sio:SIO_000028 wd:Q61751178 . +#Michaelis constant a Michaelis constant (Wikidata Q61751178) SER:hasKcat sio:SIO_000028 wd:Q6137407 . +#Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407) SER:hasKcat sio:SIO_000028 wd:Q899698 . +#Turnover Number a Turnover Number (Wikidata Q899698) SER:hasKcatKm sio:SIO_000028 wd:Q116486875 . +#Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875) SER:hasKcatKm a wd:Q7575016 . +#Specificity constant a Specificity constant (Wikidata Q7575016) SER:1 dc:identifier SER:16953-P45381-14167 ; sio:SIO_000028 SER:1_substrate, SER:1_enzyme, SER:1_reaction ; diff --git a/createRDFKinData.py b/createRDFKinData.py index 292f796..9cb3b5d 100644 --- a/createRDFKinData.py +++ b/createRDFKinData.py @@ -917,15 +917,22 @@ # #Second, print the information on units (for measurements) SIO_000221 ## Temp wdt:P2076 RDF_Kin_data.write("wdt:P2076 sio:SIO_000028 wd:Q25267 . \n".encode()) #Temperature hasUnit degree Celcius (Wikidata Q25267) +RDF_Kin_data.write("#Temperature hasUnit degree Celcius (Wikidata Q25267) \n".encode()) #Print comment for clarity ## Km SER:hasKm ; Q61751178 RDF_Kin_data.write("SER:hasKm sio:SIO_000028 wd:Q105687351 . \n".encode()) #Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351) +RDF_Kin_data.write("#Michaelis constant hasUnit degree millimolar mM (Wikidata Q105687351) \n".encode()) #Print comment for clarity RDF_Kin_data.write("SER:hasKm sio:SIO_000028 wd:Q61751178 . \n".encode()) #Michaelis constant a Michaelis constant (Wikidata Q61751178) +RDF_Kin_data.write("#Michaelis constant a Michaelis constant (Wikidata Q61751178) \n".encode()) #Print comment for clarity ## KCat SER:hasKcat RDF_Kin_data.write("SER:hasKcat sio:SIO_000028 wd:Q6137407 . \n".encode()) #Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407) +RDF_Kin_data.write("#Turnover Number hasUnit degree reciprocal second s-1 (Wikidata Q6137407) \n".encode()) #Print comment for clarity RDF_Kin_data.write("SER:hasKcat sio:SIO_000028 wd:Q899698 . \n".encode()) #Turnover Number a Turnover Number (Wikidata Q899698) +RDF_Kin_data.write("#Turnover Number a Turnover Number (Wikidata Q899698) \n".encode()) #Print comment for clarity ## Kcat/Km SER:hasKcatKm RDF_Kin_data.write("SER:hasKcatKm sio:SIO_000028 wd:Q116486875 . \n".encode()) #Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875) +RDF_Kin_data.write("#Specificity constant hasUnit degree M−1s-1 (Wikidata Q116486875) \n".encode()) #Print comment for clarity RDF_Kin_data.write("SER:hasKcatKm a wd:Q7575016 . \n\n".encode()) #Specificity constant a Specificity constant (Wikidata Q7575016) +RDF_Kin_data.write("#Specificity constant a Specificity constant (Wikidata Q7575016) \n".encode()) #Print comment for clarity ## Ph has no unit.