From e4281bd13f2876c07977c72012b4d4c259286466 Mon Sep 17 00:00:00 2001
From: Johannes Soltwedel <38459088+jo-mueller@users.noreply.github.com>
Date: Wed, 24 Jul 2024 16:17:52 +0200
Subject: [PATCH] Turn resources into Jupyter book

---
 root/docs/_config.yml                                       | 2 ++
 root/docs/_toc.yml                                          | 6 ++++++
 .../docs/instructions}/Transfer_dataset.md                  | 0
 {notebooks => root/docs/notebooks}/synchronize_tags.ipynb   | 0
 {notebooks => root/docs/notebooks}/tag_collection.yaml      | 0
 5 files changed, 8 insertions(+)
 create mode 100644 root/docs/_config.yml
 create mode 100644 root/docs/_toc.yml
 rename {instructions => root/docs/instructions}/Transfer_dataset.md (100%)
 rename {notebooks => root/docs/notebooks}/synchronize_tags.ipynb (100%)
 rename {notebooks => root/docs/notebooks}/tag_collection.yaml (100%)

diff --git a/root/docs/_config.yml b/root/docs/_config.yml
new file mode 100644
index 0000000..6e68493
--- /dev/null
+++ b/root/docs/_config.yml
@@ -0,0 +1,2 @@
+title: "OMERO Tools"
+author: "BiAPoL"
diff --git a/root/docs/_toc.yml b/root/docs/_toc.yml
new file mode 100644
index 0000000..214824f
--- /dev/null
+++ b/root/docs/_toc.yml
@@ -0,0 +1,6 @@
+format: jb-book
+root: index
+
+chapters:
+  - file: instructions/Transfer_dataset.md
+  - file: notebooks/synchronize_tags.ipynb
diff --git a/instructions/Transfer_dataset.md b/root/docs/instructions/Transfer_dataset.md
similarity index 100%
rename from instructions/Transfer_dataset.md
rename to root/docs/instructions/Transfer_dataset.md
diff --git a/notebooks/synchronize_tags.ipynb b/root/docs/notebooks/synchronize_tags.ipynb
similarity index 100%
rename from notebooks/synchronize_tags.ipynb
rename to root/docs/notebooks/synchronize_tags.ipynb
diff --git a/notebooks/tag_collection.yaml b/root/docs/notebooks/tag_collection.yaml
similarity index 100%
rename from notebooks/tag_collection.yaml
rename to root/docs/notebooks/tag_collection.yaml