If you are interested in further developing it, feel free to fork it.
Crop regions in napari manually
Crop in any dimension
Cut a volume using a plane
Note:
- this functionality currently only works with 3D data
- to drag the plane, hold the 'SHIFT' key from your keyboard
Create a new shapes layer to annotate the region you would like to crop:
Use the rectangle tool to annotate a region. Start the crop tool from the Tools > Utilities > Crop region menu.
Click the Run button to crop the region.
You can also use the Select shapes tool to move the rectangle to a new place and crop another region by clicking on Run.
Hint: You can also use the napari-tabu plugin to send all your cropped images to a new napari window.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
You can install napari-crop via pip:
pip install napari-crop
Contributions are very welcome.
Distributed under the terms of the BSD-3 license, "napari-crop" is free and open source software
If you encounter any problems, please create a thread on image.sc along with a detailed description and tag @haesleinhuepf.