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Adding an exponential version of nextStep_score #141

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Adding an exponential version of nextStep_score #141

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rfl-urbaniak
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Reinstating this PR as it is not ready.

PalkaPuri added 30 commits August 7, 2024 14:32
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add_velocity function
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velocity predictor WIP
e2ee500
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wip
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format/lint
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specify forager column as int
a923457
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add warning
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format/lint
892da93
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rename f,t for clarity
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rerun notebook
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add docstrings
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format/lint
dc950c2
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use inbuilt function for gaussian pdf
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merge changes from pp-collab2-compute-velocity
b476a17
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updated visualization
045e7d0
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add handling of nan values in visualization
05b3d90
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add _generate_pairwise_copying predictor
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format/lint
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type hints
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add pairwise predictor and animation function
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change velocity to backward looking
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Merge branch 'pp-collab2-compute-velocity' of https://github.com/Basi…
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…sResearch/collab-creatures into pp-collab2-pairwise-copying-pred
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docstrings and type hints
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generate function and typehints
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Merge branch 'staging-collab-2' of https://github.com/BasisResearch/c…
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…ollab-creatures into pp-collab2-pairwise-copying-pred
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fixed naming, nan handling
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refactoring
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vicsek wip
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update normalization of velocity predictors
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distance_to_next_move WIP
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Merge branch 'pp-collab2-vicsek-predictor' of https://github.com/Basi…
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…sResearch/collab-creatures into pp-collab2-howfarscore
@rfl-urbaniak rfl-urbaniak added the status:WIP Work-in-progress not yet ready for review label Oct 18, 2024
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@PalkaPuri PalkaPuri changed the title Pp nextstep exponential Adding an exponential version of nextStep_score Dec 12, 2024
@PalkaPuri PalkaPuri changed the base branch from staging-collab-2 to main December 12, 2024 19:30
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@rfl-urbaniak @dimkab -- final PR, ready for review! Following changes were made:

  1. Added function to calculate an exponential version of the next step score which I am using in the fish analysis as it gives better model performance
  2. Added a new test notebook for nextStep_score generating functions that tests both linear and exponential forms specifically
  3. Small change to plot_predictor to allow predictor name to be shown at the top of the plot

@PalkaPuri PalkaPuri added enhancement New feature or request status:awaiting review Awaiting response from reviewer and removed status:WIP Work-in-progress not yet ready for review labels Dec 12, 2024
@PalkaPuri PalkaPuri requested review from PalkaPuri and dimkab and removed request for PalkaPuri December 12, 2024 20:44
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@dimkab dimkab Awaiting requested review from dimkab

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@rfl-urbaniak @PalkaPuri @dimkab