Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

pathway analysis on FDR? #8

Open
marwa38 opened this issue Sep 26, 2022 · 1 comment
Open

pathway analysis on FDR? #8

marwa38 opened this issue Sep 26, 2022 · 1 comment

Comments

@marwa38
Copy link

marwa38 commented Sep 26, 2022

HI guys
It is not an issue it a question regarding enrichmenet analysis.
Do you recommend running pathway analysis without FDR cutt-off so it is independent of DGE genes?

I am a bit new to rnaseq so your comments are helpful.
M
@risserlin
Copy link
Collaborator

We recommend pathway analysis on a ranked unthresholded list if possible with your dataset. Please see - https://www.nature.com/articles/s41596-018-0103-9 for the details.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@risserlin @marwa38