From 2f6c7281ceac1470ea27a4b4e4f7d6fdb443e199 Mon Sep 17 00:00:00 2001 From: myth Date: Mon, 26 Sep 2022 11:43:55 +0800 Subject: [PATCH] add cas12 --- modules/pipelines.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/pipelines.py b/modules/pipelines.py index e62f435..d833342 100644 --- a/modules/pipelines.py +++ b/modules/pipelines.py @@ -249,7 +249,7 @@ def _pipeline_run(self): if acc_num not in dict_all_cas: all_cas_intervals = [] else: - all_cas_intervals = [key for key, value in dict_all_cas[acc_num].items() if value == "cas9"] + all_cas_intervals = [key for key, value in dict_all_cas[acc_num].items() if value == "cas9" or value == "cas12"] #all_cas_intervals = [string_tuple_to_tuple(interval) for interval in all_cas_intervals] interval_tracr_rna_anti_repeat = (int(anti_repeat_start), int(anti_repeat_end)) @@ -358,4 +358,4 @@ def _run_model_search(self): print("\n\t\tPerforming anti-repeat search") anti_repeat_search_type_v(self.summary_file_name, ",", self.summary_file_name) - filter_csv_file_model_run(self.summary_file_name, self.summary_file_name, 0.0001, 30) \ No newline at end of file + filter_csv_file_model_run(self.summary_file_name, self.summary_file_name, 0.0001, 30)