diff --git a/.circleci/config.yml b/.circleci/config.yml index d82f7a9..2025068 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -22,8 +22,13 @@ jobs: working_directory: /tmp/src steps: - run: - name: Install parallel gzip and python3 - command: apk add --no-cache pigz python3 + name: Install parallel gzip, python3 and java + command: apk add --no-cache pigz python3 java + - run: + name: Install nextflow + command: | + wget -qO- https://get.nextflow.io | bash + export PATH=$PATH:$PWD/nextflow - restore_cache: keys: - docker-v1-{{ .Branch }}-{{ epoch }} diff --git a/.gitignore b/.gitignore index d2afc69..fd46b55 100644 --- a/.gitignore +++ b/.gitignore @@ -11,4 +11,4 @@ work/ nextflow # Ignore results files -results +results/ diff --git a/Dockerfile b/Dockerfile index 27d774e..d1d0a93 100644 --- a/Dockerfile +++ b/Dockerfile @@ -21,3 +21,4 @@ ENV PATH=${PATH}:/scif/apps/bcftools/bin # SciF Entrypoint # Disabled because of compatibility with nextflow. #ENTRYPOINT ["scif"] +CMD scif diff --git a/main.nf b/main.nf index 6803896..d426b6a 100644 --- a/main.nf +++ b/main.nf @@ -22,7 +22,7 @@ Pipeline overview: def helpMessage() { log.info""" ========================================= - BU-ISCIII/nextflow-scif DEMO PIPELINE v${version} + BU-ISCIII/nextflow-scif DEMO PIPELINE v${params.ver} ========================================= Usage: @@ -36,13 +36,11 @@ def helpMessage() { --outdir Output dir. --help show this message. -profile Hardware config to use. standard/docker/singularity. Default: standard. + --version Show pipeline version. """.stripIndent() } -// Pipeline version -version = '0.1' - // Show help message params.help = false if (params.help){ @@ -50,6 +48,13 @@ if (params.help){ exit 0 } +if (params.version){ + log.info""" + v${params.ver} + """.stripIndent() + exit 0 +} + // Default parameters params.reads = "$baseDir/data/samples/*.fastq" params.genome = "$baseDir/data/genome.fa" diff --git a/nextflow.config b/nextflow.config index b0caef0..513d2ac 100644 --- a/nextflow.config +++ b/nextflow.config @@ -16,7 +16,7 @@ manifest { // Global default params, used in configs params { - version = '0.1' //Pipeline version + ver = '1.1' //Pipeline version nf_required_version = '0.27.6' //Minimum version of Nextflow required reads="$baseDir/data/samples/*.fastq" diff --git a/results/bwa/A.sorted.bam b/results/bwa/A.sorted.bam index 152daaf..b76d3c7 100644 Binary files a/results/bwa/A.sorted.bam and b/results/bwa/A.sorted.bam differ diff --git a/results/bwa/A.stats.txt b/results/bwa/A.stats.txt index e721ca3..8a972bf 100644 --- a/results/bwa/A.stats.txt +++ b/results/bwa/A.stats.txt @@ -1,17 +1,16 @@ -# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats -# This file contains statistics for all reads. +# This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats # The command line was: stats A.sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK f5ba9629 5f9103e2 6c821247 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. -SN raw total sequences: 25000 +SN raw total sequences: 25001 SN filtered sequences: 0 -SN sequences: 25000 +SN sequences: 25001 SN is sorted: 1 -SN 1st fragments: 25000 +SN 1st fragments: 25001 SN last fragments: 0 -SN reads mapped: 498 +SN reads mapped: 499 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 24502 SN reads properly paired: 0 # proper-pair bit set @@ -20,21 +19,15 @@ SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 4 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 1 -SN total length: 2525000 # ignores clipping -SN total first fragment length: 2525000 # ignores clipping -SN total last fragment length: 0 # ignores clipping -SN bases mapped: 50298 # ignores clipping -SN bases mapped (cigar): 47745 # more accurate +SN total length: 2525030 # ignores clipping +SN bases mapped: 50328 # ignores clipping +SN bases mapped (cigar): 47775 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 864 # from NM fields -SN error rate: 1.809614e-02 # mismatches / bases mapped (cigar) -SN average length: 101 -SN average first fragment length: 101 -SN average last fragment length: 0 +SN error rate: 1.808477e-02 # mismatches / bases mapped (cigar) +SN average length: 100 SN maximum length: 101 -SN maximum first fragment length: 0 -SN maximum last fragment length: 0 SN average quality: 32.4 SN insert size average: 0.0 SN insert size standard deviation: 0.0 @@ -42,11 +35,214 @@ SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 -SN percentage of properly paired reads (%): 0.0 -# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. +# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. -# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. +FFQ 1 0 0 197 0 0 0 0 0 0 0 589 0 0 0 0 0 538 0 0 1 0 0 46 351 0 452 732 635 783 0 2352 9144 0 2764 6417 0 0 0 0 0 0 0 0 +FFQ 2 0 0 197 0 0 0 0 0 0 0 523 0 0 0 0 0 516 0 0 0 0 0 64 299 0 449 614 780 630 0 1867 8595 0 2000 8467 0 0 0 0 0 0 0 0 +FFQ 3 0 0 207 0 0 0 0 0 0 0 563 0 0 0 0 0 567 0 0 0 0 0 94 313 0 373 647 855 579 0 1748 8242 0 1747 9066 0 0 0 0 0 0 0 0 +FFQ 4 0 0 222 0 0 0 0 0 0 0 572 0 0 0 0 0 195 0 0 346 0 0 75 0 0 264 295 18 579 0 615 14 971 1264 1 6657 0 12913 0 0 0 0 0 +FFQ 5 0 0 239 0 0 0 0 0 0 0 594 0 0 0 0 0 232 0 0 334 0 0 104 0 0 313 346 21 548 0 746 8 1070 1384 1 6371 0 12690 0 0 0 0 0 +FFQ 6 0 0 260 0 0 0 0 0 93 0 553 252 0 0 1 30 64 317 104 187 0 16 10 186 0 375 433 76 413 224 799 99 1235 1262 0 5985 553 11474 0 0 0 0 0 +FFQ 7 0 0 271 0 0 0 3 0 71 0 370 178 0 0 0 40 33 370 71 76 0 10 12 89 0 303 282 46 517 165 613 124 1153 1381 0 6231 710 11882 0 0 0 0 0 +FFQ 8 0 0 285 0 0 0 0 0 54 0 308 154 0 0 0 33 25 322 64 78 0 8 2 112 0 283 263 75 388 148 615 106 1034 1283 0 6161 739 12461 0 0 0 0 0 +FFQ 9 0 0 294 0 0 0 0 0 45 0 315 143 0 0 0 44 34 289 48 105 2 11 5 106 0 263 74 308 323 148 660 83 867 748 643 2153 0 3654 1504 12132 0 0 0 +FFQ 10 0 0 301 0 0 1 0 0 55 0 303 138 0 0 0 37 27 300 75 95 1 12 10 92 0 339 99 410 242 164 656 79 923 797 594 2204 0 3582 1625 11840 0 0 0 +FFQ 11 0 0 317 0 0 0 0 0 74 0 311 138 0 0 0 42 45 295 84 104 0 7 11 111 0 306 78 505 150 185 628 88 957 786 638 2166 0 3565 1640 11770 0 0 0 +FFQ 12 0 0 327 0 0 0 0 0 61 2 304 138 0 1 0 33 46 289 71 99 0 9 1 98 0 284 73 592 47 157 642 67 911 744 649 2144 0 3588 1602 12022 0 0 0 +FFQ 13 0 0 335 0 0 0 0 2 53 1 277 135 0 1 0 26 38 282 62 92 2 6 2 120 4 307 79 577 21 176 618 78 985 722 610 2128 0 3566 1671 12025 0 0 0 +FFQ 14 0 0 345 0 0 0 1 1 69 2 322 116 0 0 0 5 49 285 71 100 0 10 8 34 81 341 71 605 19 181 330 378 747 774 701 421 1396 1207 3023 1862 4252 7194 0 +FFQ 15 0 0 366 0 0 0 2 0 65 1 333 122 0 0 0 2 57 311 64 102 0 15 8 36 92 318 90 608 20 165 319 440 721 741 684 359 1408 1166 3108 1913 4278 7087 0 +FFQ 16 0 0 384 0 0 0 1 1 71 4 326 146 3 0 0 2 61 263 66 120 0 13 7 41 80 292 81 638 27 166 335 399 756 791 675 420 1431 1163 3037 1894 4365 6942 0 +FFQ 17 0 0 398 0 0 1 1 1 72 8 395 151 0 0 0 5 81 299 92 111 1 17 10 47 116 335 84 680 25 176 320 436 773 834 681 423 1495 1203 3089 1822 4271 6548 0 +FFQ 18 0 0 416 0 0 0 1 2 94 11 345 148 1 0 0 3 76 306 65 95 0 6 7 31 84 317 67 643 19 164 307 408 851 777 742 397 1430 1186 3139 1977 4207 6679 0 +FFQ 19 0 0 426 0 0 0 1 0 75 16 303 133 1 1 0 8 43 30 351 97 3 13 8 59 112 307 62 649 10 178 329 383 747 480 1040 379 1201 1191 2388 2480 4487 7010 0 +FFQ 20 0 0 446 0 0 0 1 0 72 15 323 129 1 0 2 8 46 41 315 109 1 17 6 43 115 297 77 587 13 172 316 399 711 490 1016 368 1245 1164 2427 2535 4521 6973 0 +FFQ 21 0 0 460 0 0 1 2 0 80 20 278 123 0 1 1 15 57 37 338 93 0 16 6 54 132 290 71 637 23 163 349 444 716 516 999 427 1236 1192 2491 2551 4564 6618 0 +FFQ 22 0 0 476 0 0 0 4 1 98 18 338 135 0 2 1 9 80 34 287 116 1 14 8 64 153 322 89 659 28 191 380 451 775 529 1010 467 1275 1176 2574 2559 4458 6219 0 +FFQ 23 0 0 490 0 0 0 1 4 82 42 304 95 1 0 1 13 59 57 279 101 1 23 12 59 159 275 85 576 32 160 398 426 744 491 979 419 1223 1222 2441 2790 4346 6611 0 +FFQ 24 0 0 502 0 0 0 1 2 84 53 303 115 2 1 1 19 103 70 266 96 0 9 10 61 171 273 81 570 24 162 437 432 676 500 1026 497 1185 1229 2423 2527 4037 7053 0 +FFQ 25 0 0 531 0 0 0 0 2 96 55 283 55 1 1 2 22 111 113 248 95 2 23 8 67 191 268 94 546 20 156 433 414 636 547 987 450 1253 1251 2457 2542 4052 6989 0 +FFQ 26 0 0 549 0 0 0 2 3 102 79 298 83 2 3 1 34 116 108 163 98 1 13 14 64 215 215 87 484 28 183 557 387 682 484 997 480 1148 1196 2667 2530 4123 6805 0 +FFQ 27 0 0 563 0 0 0 2 1 127 115 274 58 5 3 1 28 135 109 174 90 1 19 15 67 210 276 93 523 35 186 552 372 618 516 955 542 1270 1169 2586 2466 4159 6686 0 +FFQ 28 0 0 586 0 0 1 0 4 111 109 221 49 1 1 2 36 136 135 106 108 2 20 19 77 249 272 78 486 27 169 555 429 508 494 933 562 1215 1276 2608 2451 4258 6707 0 +FFQ 29 0 0 607 0 0 1 1 6 132 192 231 38 2 2 2 44 155 114 114 112 5 27 18 84 280 258 77 459 21 192 605 432 544 622 1003 576 1253 1181 2696 2220 4289 6406 0 +FFQ 30 0 0 623 0 0 0 2 6 158 172 193 24 1 4 6 61 182 106 79 106 4 26 8 72 299 256 79 395 22 192 657 402 471 584 975 587 1134 1239 2813 2433 4283 6347 0 +FFQ 31 0 0 643 0 0 2 5 15 219 317 260 17 1 4 5 66 212 97 108 156 5 50 13 108 420 289 108 491 45 260 737 469 495 653 1015 677 1303 1206 2933 2029 4374 5193 0 +FFQ 32 0 0 665 0 0 2 9 12 159 248 148 4 2 6 6 69 244 96 86 119 2 31 12 104 333 342 99 402 39 181 810 417 440 603 1076 705 1163 1362 2900 2363 4392 5349 0 +FFQ 33 0 0 689 0 0 2 1 15 190 294 111 5 2 6 12 100 203 73 51 102 2 38 23 104 340 303 93 345 36 201 875 412 342 618 1003 740 1147 1290 2959 2276 4423 5574 0 +FFQ 34 0 0 705 0 0 1 3 15 198 283 75 4 3 11 7 100 223 53 72 115 1 36 21 97 386 365 101 365 44 197 854 422 327 656 969 853 1154 1275 3050 2108 4400 5451 0 +FFQ 35 0 0 722 0 0 1 3 10 182 303 50 1 4 5 5 86 218 41 100 95 7 30 21 87 363 362 113 277 58 194 879 461 289 677 899 853 1104 1322 3118 2060 4403 5597 0 +FFQ 36 0 0 740 0 0 1 6 16 174 305 32 3 2 5 9 132 190 27 58 84 7 44 24 93 331 332 91 267 61 194 867 439 266 678 843 917 1028 1275 3133 2027 4502 5797 0 +FFQ 37 0 0 760 0 0 3 10 21 176 310 19 1 3 9 11 145 190 22 94 109 3 49 21 103 357 335 110 294 56 189 876 452 237 716 890 909 991 1229 3154 1950 4599 5597 0 +FFQ 38 0 0 786 0 0 0 10 17 174 307 4 0 7 9 18 142 144 8 67 106 2 55 26 102 331 333 111 302 54 205 923 470 268 768 794 960 930 1263 3250 1921 4489 5644 0 +FFQ 39 0 0 812 0 0 2 11 28 175 315 4 2 4 10 15 157 134 11 60 134 9 50 27 122 348 300 137 287 80 222 875 469 299 843 768 991 882 1271 3100 1962 4535 5549 0 +FFQ 40 0 0 848 0 0 1 12 26 170 317 3 1 7 9 15 157 145 13 71 114 12 64 37 117 403 275 90 255 82 221 893 429 298 850 793 1092 883 1286 3002 2061 4513 5435 0 +FFQ 41 0 0 875 0 0 1 17 35 137 269 3 1 6 17 26 169 110 8 71 92 9 52 25 126 369 277 139 269 86 194 889 499 291 873 727 1147 879 1315 3136 2033 4465 5363 0 +FFQ 42 0 0 901 0 0 2 10 37 143 278 2 0 11 16 30 172 102 19 73 128 12 62 39 133 369 220 132 307 88 208 862 494 333 971 673 1139 902 1287 3135 2013 4536 5161 0 +FFQ 43 0 0 950 0 0 2 23 49 190 373 1 2 11 28 32 201 81 17 91 152 12 64 62 136 403 219 160 318 115 237 861 565 284 1020 720 1193 903 1341 3231 1865 4379 4709 0 +FFQ 44 0 0 981 0 0 3 27 56 173 365 1 5 16 42 37 181 71 22 62 112 16 75 54 145 454 226 160 327 163 244 877 539 293 1079 675 1216 873 1355 3147 2003 4337 4588 0 +FFQ 45 0 0 1020 0 0 5 24 62 156 289 5 5 25 47 49 234 45 11 61 107 20 73 61 177 384 210 163 319 151 230 886 495 352 1103 701 1188 818 1384 3139 2074 4323 4604 0 +FFQ 46 0 0 1071 0 0 3 33 59 147 294 1 5 20 50 60 180 50 25 76 140 20 73 78 193 428 161 167 273 186 212 853 557 305 1119 708 1186 903 1385 3148 1966 4373 4492 0 +FFQ 47 0 0 1111 0 0 2 55 95 216 391 6 5 19 52 70 207 37 24 91 143 27 66 92 232 432 150 215 368 218 271 834 581 341 1130 764 1091 988 1423 3247 1810 4293 3903 0 +FFQ 48 0 0 1137 0 0 1 33 69 178 280 1 9 28 64 71 232 27 24 69 126 47 65 85 240 443 139 199 271 285 203 826 606 327 1170 748 1220 906 1434 3192 2001 4140 4104 0 +FFQ 49 0 0 1179 0 0 3 47 103 180 308 3 8 25 70 78 177 31 33 71 145 55 75 116 242 460 103 238 286 278 243 746 561 332 1176 756 1112 958 1479 2824 2389 4148 3962 0 +FFQ 50 0 0 1222 0 0 2 37 100 204 254 2 2 41 74 63 167 31 25 83 124 39 68 106 241 388 98 262 280 318 247 777 598 367 1201 748 1026 1008 1557 2808 2287 4200 3945 0 +FFQ 51 0 0 1260 0 0 4 29 90 178 213 4 7 41 115 101 215 21 16 76 105 81 70 165 364 460 132 319 276 557 224 1143 780 405 1767 971 1471 1024 2729 3127 3115 2498 847 0 +FFQ 52 0 0 1292 0 0 4 41 97 175 203 3 8 43 106 84 166 15 24 93 128 56 81 154 328 388 86 321 251 512 217 854 758 421 1355 900 1202 1061 2205 3279 3641 3440 1008 0 +FFQ 53 0 0 1327 0 0 2 41 89 145 168 7 3 30 97 70 110 18 28 79 131 66 78 142 275 333 62 319 257 432 224 695 700 407 1145 950 1134 1056 1719 3022 3105 4271 2263 0 +FFQ 54 0 0 1372 0 0 2 50 113 188 181 4 9 28 118 86 89 23 25 103 133 70 82 176 311 326 53 315 294 437 281 546 751 455 1049 1024 1043 1235 1514 2938 2432 4041 3103 0 +FFQ 55 0 0 1413 0 0 3 43 111 212 130 2 10 38 94 69 78 17 23 84 141 58 67 195 305 226 142 340 242 508 266 536 771 446 936 1046 1097 1211 1515 2803 2464 3892 3466 0 +FFQ 56 0 0 1461 0 0 4 55 125 223 135 0 10 44 126 91 68 19 22 85 139 64 74 196 316 200 128 387 272 524 302 488 788 458 915 1144 1070 1223 1504 2739 2261 3822 3518 0 +FFQ 57 0 0 1518 0 0 3 80 186 381 171 5 13 54 145 113 79 16 41 137 191 84 90 219 343 215 195 374 259 586 332 481 777 507 950 1197 1005 1204 1462 2562 2269 3543 3213 0 +FFQ 58 0 0 1547 0 0 0 47 116 247 76 4 21 43 159 103 76 5 29 89 115 95 74 249 362 191 125 417 201 697 301 480 742 472 928 1178 1003 1244 1528 2529 2573 3469 3465 0 +FFQ 59 0 0 1573 0 0 3 49 99 190 72 3 9 53 121 66 46 14 24 68 75 89 70 236 294 113 90 429 195 658 278 448 855 507 826 1238 1005 1297 1523 2515 2570 3640 3659 0 +FFQ 60 0 0 1610 0 0 3 41 99 226 71 7 12 45 146 57 19 19 25 102 124 81 90 235 243 120 120 415 194 574 338 371 829 525 815 1205 1040 1368 1564 2499 2501 3557 3710 0 +FFQ 61 0 0 1655 0 0 0 38 86 216 38 8 15 29 135 56 17 12 27 91 97 75 75 220 241 99 113 431 188 588 292 369 800 582 754 1330 1077 1382 1565 2358 2584 3486 3871 0 +FFQ 62 0 0 1698 0 0 3 56 147 346 37 7 15 33 152 73 18 19 38 132 117 122 85 260 257 90 127 492 168 622 387 367 870 609 752 1376 1199 1530 1512 2320 2364 3224 3376 0 +FFQ 63 0 0 1742 0 0 5 47 173 362 39 5 25 45 182 67 16 21 28 154 134 100 93 307 248 94 163 557 189 698 408 388 935 624 712 1454 1253 1594 1514 2229 2332 3050 3013 0 +FFQ 64 0 0 1775 0 0 4 32 103 228 18 7 26 32 178 53 16 21 29 112 78 132 77 315 213 76 115 507 116 733 356 413 926 633 750 1455 1307 1636 1623 2272 2632 2944 3057 0 +FFQ 65 0 0 1802 0 0 4 32 120 201 15 4 13 30 165 41 9 18 26 110 104 103 83 285 195 77 127 560 135 628 450 419 915 632 734 1537 1415 1717 1720 2109 2634 2912 2919 0 +FFQ 66 0 0 1884 0 0 3 44 120 215 19 3 19 27 136 48 6 18 26 126 96 108 89 276 186 71 145 565 124 651 443 402 893 676 713 1511 1551 1871 1826 1991 2597 2737 2784 0 +FFQ 67 0 0 1885 0 0 5 36 126 225 12 12 33 51 141 32 13 14 24 135 84 130 110 304 151 83 147 615 119 584 467 442 941 740 715 1665 1706 1882 1705 1960 2660 2514 2532 0 +FFQ 68 0 0 1937 0 0 5 43 122 205 9 5 23 27 125 26 13 18 31 122 81 111 99 298 142 72 150 619 133 571 539 468 915 737 731 1753 1815 1998 1894 1907 2551 2372 2333 0 +FFQ 69 0 0 1988 0 0 4 51 129 226 3 6 29 33 114 32 12 24 30 142 102 132 94 275 154 73 181 640 136 547 588 480 974 798 734 1867 1898 2105 1868 1695 2536 2128 2172 0 +FFQ 70 0 0 2047 0 0 2 31 121 170 6 11 36 28 145 32 11 17 32 122 74 117 93 237 120 108 169 692 120 585 569 500 951 846 742 1940 2110 2150 1855 1610 2600 1969 2032 0 +FFQ 71 0 0 2105 0 0 8 29 128 208 4 4 36 24 111 38 10 17 36 151 86 132 96 273 116 95 161 660 126 479 634 497 1035 826 796 1959 2350 2228 1991 1482 2463 1797 1809 0 +FFQ 72 0 0 2163 0 0 8 43 157 202 3 10 39 39 108 24 7 18 33 204 69 154 110 292 124 96 201 714 135 534 642 560 1002 821 789 2136 2412 2301 1968 1353 2346 1648 1535 0 +FFQ 73 0 0 2217 0 0 6 36 136 152 7 11 27 28 139 28 5 18 30 162 63 163 107 294 100 92 194 715 132 481 616 606 951 881 857 2238 2653 2307 2030 1241 2365 1431 1481 0 +FFQ 74 0 0 2296 0 0 5 30 214 205 5 6 43 27 102 31 14 15 36 183 65 160 122 277 110 131 212 765 131 466 729 585 1028 900 898 2368 2764 2272 1991 1162 2121 1287 1244 0 +FFQ 75 0 0 2357 0 0 5 32 199 184 3 12 40 30 122 34 13 20 53 203 48 218 126 283 108 100 228 792 172 458 810 597 1030 903 973 2433 2928 2332 1980 987 2028 1077 1082 0 +FFQ 76 0 0 2422 0 0 8 48 298 228 1 15 58 31 137 36 16 22 37 295 72 206 130 280 132 153 293 871 194 443 924 671 1120 980 952 2519 2990 2232 1840 842 1747 945 812 0 +FFQ 77 0 0 2475 0 0 15 49 254 184 3 14 54 50 137 28 14 15 45 240 75 246 164 273 110 142 278 920 188 446 940 684 1128 1006 977 2727 3118 2240 1815 832 1619 813 682 0 +FFQ 78 0 0 2534 0 0 11 44 241 148 2 13 43 33 113 25 21 9 35 226 54 238 162 245 99 151 275 888 211 402 889 706 1165 1083 1027 2887 3326 2323 1744 679 1632 706 610 0 +FFQ 79 0 0 2597 0 0 7 31 205 107 1 13 40 30 100 24 14 20 42 207 50 224 150 211 120 156 277 874 193 345 903 710 1211 1094 998 3006 3604 2343 1809 589 1513 629 553 0 +FFQ 80 0 0 2647 0 0 11 33 200 105 0 18 50 33 86 19 14 18 41 188 59 208 141 195 114 140 319 834 171 315 910 688 1250 1099 1112 3135 3799 2318 1821 558 1332 520 499 0 +FFQ 81 0 0 2717 0 0 6 30 260 112 0 21 61 36 64 21 16 19 42 222 70 245 136 161 103 156 315 809 223 264 975 714 1150 1130 1083 3258 4084 2260 1681 449 1195 463 449 0 +FFQ 82 0 0 2787 0 0 15 36 248 96 1 23 61 41 63 20 18 20 50 241 77 286 133 159 113 141 375 807 200 295 1023 726 1249 1116 1142 3391 4102 2144 1611 420 992 406 372 0 +FFQ 83 0 0 2855 0 0 14 32 321 102 0 29 75 40 64 20 26 28 42 289 64 279 126 141 119 164 418 919 239 254 1128 687 1308 1221 1136 3502 4042 2048 1406 338 888 328 308 0 +FFQ 84 0 0 2914 0 0 15 31 227 62 0 26 74 33 60 14 20 14 44 234 57 293 113 116 126 168 382 817 245 265 1091 709 1303 1154 1156 3652 4481 2079 1346 318 814 290 257 0 +FFQ 85 0 0 2996 0 0 6 14 251 70 0 29 53 23 43 16 17 14 50 213 72 280 105 92 134 189 406 725 248 215 1088 680 1359 1208 1183 3742 4633 2116 1260 266 684 272 248 0 +FFQ 86 0 0 3097 0 0 9 17 222 45 0 26 52 33 46 16 15 14 46 225 67 311 92 85 148 186 428 771 250 199 1031 619 1375 1287 1181 3804 4917 1967 1138 224 590 260 207 0 +FFQ 87 0 0 3174 0 0 8 21 279 48 0 30 62 20 37 9 23 20 51 232 81 291 90 81 129 182 468 680 271 208 1143 696 1390 1243 1128 3891 5052 1809 1044 189 521 220 179 0 +FFQ 88 0 0 3268 0 0 22 21 290 48 0 30 63 36 40 23 35 20 47 254 83 336 83 75 153 180 513 696 328 191 1123 653 1400 1285 1177 3991 4991 1708 932 156 422 167 160 0 +FFQ 89 0 0 3360 0 0 15 19 275 38 0 34 61 30 25 15 30 14 44 223 96 358 76 53 168 181 539 647 295 173 1110 638 1392 1210 1206 4127 5155 1690 862 151 378 168 144 0 +FFQ 90 0 0 3485 0 0 21 27 379 44 0 41 71 35 33 9 43 16 50 293 111 340 69 45 154 242 607 619 338 155 1249 644 1360 1265 1136 4047 5123 1487 724 126 343 136 133 0 +FFQ 91 0 0 3591 0 0 13 17 280 19 1 35 62 34 31 19 47 18 63 237 124 376 70 53 141 226 614 565 330 148 1212 664 1479 1287 1114 4150 5221 1437 657 103 310 128 124 0 +FFQ 92 0 0 3744 0 0 24 12 259 25 0 42 62 45 27 5 37 17 63 243 141 322 56 34 163 241 576 570 332 148 1214 662 1331 1329 1188 4309 5256 1361 572 114 262 112 102 0 +FFQ 93 0 0 3904 0 0 19 11 251 19 0 44 61 24 12 10 34 22 65 241 144 317 37 36 175 228 646 498 389 117 1286 677 1334 1350 1114 4291 5313 1318 515 82 235 86 95 0 +FFQ 94 0 0 4055 0 0 17 7 236 25 0 44 45 24 14 8 34 18 70 208 123 309 39 30 180 217 670 459 367 126 1232 679 1481 1379 1122 4264 5372 1244 451 75 227 70 79 0 +FFQ 95 0 0 4279 0 0 19 12 286 26 0 47 46 11 30 13 47 28 83 276 156 303 40 32 185 257 715 421 420 112 1275 674 1479 1351 1119 4150 5269 1056 391 66 196 69 61 0 +FFQ 96 0 0 4472 0 0 16 10 163 10 0 47 29 8 23 4 43 19 55 233 169 291 34 24 180 242 672 370 430 95 1261 696 1471 1392 1170 4257 5300 1079 377 69 195 42 52 0 +FFQ 97 0 0 4726 0 0 17 5 135 7 0 36 26 6 7 6 33 13 53 201 116 242 29 18 169 230 679 302 385 90 1205 670 1487 1416 1178 4374 5432 1068 326 52 187 42 32 0 +FFQ 98 0 0 5041 0 0 7 1 108 2 0 24 12 2 11 8 29 19 49 181 136 205 11 19 163 188 666 267 348 65 1152 639 1422 1378 1216 4527 5470 1062 303 43 181 28 17 0 +FFQ 99 0 0 5418 0 0 1 0 24 2 0 4 6 0 4 1 26 21 48 178 128 197 8 18 154 209 590 230 358 56 1093 637 1469 1432 1146 4510 5505 981 302 40 172 16 16 0 +FFQ 100 0 0 5880 0 0 0 0 0 0 0 0 0 0 0 1 28 13 48 212 121 164 10 12 119 218 613 193 370 48 1088 646 1454 1363 1236 4519 5233 965 266 36 128 10 6 0 +FFQ 101 0 0 6458 0 0 0 0 0 0 0 0 0 0 0 0 67 63 110 532 266 322 33 44 275 363 1204 349 665 97 1783 857 1897 1694 955 4034 2320 394 120 17 77 2 2 0 +FFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. +LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.25 15 GCF 1.01 27 @@ -88,10 +284,11 @@ GCF 35.68 1358 GCF 36.68 1435 GCF 37.69 1483 GCF 38.69 1514 -GCF 39.70 1389 -GCF 40.70 1387 -GCF 41.71 1287 -GCF 42.71 1113 +GCF 39.45 1389 +GCF 39.95 1390 +GCF 40.70 1388 +GCF 41.71 1288 +GCF 42.71 1114 GCF 43.72 1013 GCF 44.72 888 GCF 45.73 738 @@ -124,216 +321,111 @@ GCF 78.39 1 GCF 81.41 0 GCF 84.42 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. -# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -GCC 1 34.31 17.48 18.48 29.74 0.00 0.00 -GCC 2 34.55 16.57 18.12 30.76 0.00 0.00 -GCC 3 32.81 17.30 17.26 32.64 0.00 0.00 -GCC 4 31.64 17.66 18.08 32.62 0.00 0.00 -GCC 5 31.78 17.45 18.90 31.86 0.00 0.00 -GCC 6 32.36 18.61 18.84 30.18 0.06 0.00 -GCC 7 32.24 17.34 18.66 31.75 0.00 0.00 -GCC 8 32.36 18.43 18.30 30.91 0.02 0.00 -GCC 9 31.33 18.97 17.91 31.80 0.03 0.00 -GCC 10 32.35 18.09 18.13 31.44 0.00 0.00 -GCC 11 31.90 18.15 18.00 31.95 0.02 0.00 -GCC 12 31.60 18.08 17.99 32.34 0.05 0.00 -GCC 13 31.83 18.04 17.79 32.34 0.00 0.00 -GCC 14 31.90 18.12 18.20 31.77 0.00 0.00 -GCC 15 31.75 18.28 18.01 31.97 0.04 0.00 -GCC 16 31.36 18.47 18.19 31.98 0.07 0.00 -GCC 17 31.67 18.25 18.16 31.92 0.08 0.00 -GCC 18 31.90 17.85 18.38 31.86 0.06 0.00 -GCC 19 31.49 18.57 17.88 32.06 0.06 0.00 -GCC 20 31.54 18.45 18.41 31.60 0.08 0.00 -GCC 21 30.68 18.87 18.24 32.21 0.09 0.00 -GCC 22 31.01 18.66 18.61 31.71 0.10 0.00 -GCC 23 31.52 18.17 18.63 31.69 0.10 0.00 -GCC 24 31.04 18.88 18.30 31.78 0.04 0.00 -GCC 25 31.57 18.46 18.32 31.66 0.10 0.00 -GCC 26 31.50 18.67 18.35 31.48 0.10 0.00 -GCC 27 31.51 18.78 18.21 31.50 0.10 0.00 -GCC 28 31.50 18.35 18.34 31.81 0.10 0.00 -GCC 29 31.09 19.14 18.28 31.50 0.09 0.00 -GCC 30 31.72 18.31 18.19 31.78 0.09 0.00 -GCC 31 31.14 18.91 18.42 31.54 0.12 0.00 -GCC 32 31.24 18.75 18.39 31.62 0.12 0.00 -GCC 33 31.46 18.53 18.21 31.80 0.14 0.00 -GCC 34 31.06 18.41 18.84 31.68 0.12 0.00 -GCC 35 31.12 18.43 18.40 32.06 0.10 0.00 -GCC 36 31.48 18.60 18.72 31.20 0.09 0.00 -GCC 37 31.75 18.72 18.27 31.27 0.08 0.00 -GCC 38 31.01 18.79 18.85 31.35 0.06 0.00 -GCC 39 31.03 18.57 18.84 31.56 0.06 0.00 -GCC 40 30.98 18.89 18.53 31.60 0.00 0.00 -GCC 41 31.28 18.66 18.94 31.12 0.00 0.00 -GCC 42 31.44 19.26 18.32 30.98 0.00 0.00 -GCC 43 32.25 18.35 18.46 30.94 0.03 0.00 -GCC 44 31.50 18.67 18.65 31.18 0.00 0.00 -GCC 45 31.48 18.84 18.37 31.31 0.02 0.00 -GCC 46 31.53 18.63 18.35 31.49 0.00 0.00 -GCC 47 31.19 19.04 18.92 30.84 0.00 0.00 -GCC 48 31.41 18.63 18.52 31.44 0.02 0.00 -GCC 49 31.53 18.11 18.96 31.40 0.07 0.00 -GCC 50 31.71 18.56 18.41 31.31 0.06 0.00 -GCC 51 31.37 18.67 18.19 31.77 0.05 0.00 -GCC 52 31.16 18.81 18.62 31.41 0.08 0.00 -GCC 53 31.53 18.86 18.02 31.59 0.09 0.00 -GCC 54 31.53 18.68 18.55 31.25 0.08 0.00 -GCC 55 31.24 19.05 18.34 31.37 0.00 0.00 -GCC 56 30.81 18.62 19.08 31.48 0.00 0.00 -GCC 57 31.46 18.52 18.61 31.42 0.00 0.00 -GCC 58 31.39 18.35 18.85 31.41 0.01 0.00 -GCC 59 31.00 18.72 18.36 31.93 0.00 0.00 -GCC 60 31.34 18.65 18.47 31.54 0.00 0.00 -GCC 61 31.85 18.71 18.46 30.98 0.00 0.00 -GCC 62 32.15 18.86 18.04 30.95 0.00 0.00 -GCC 63 31.02 18.42 18.90 31.66 0.00 0.00 -GCC 64 31.84 18.32 18.35 31.50 0.00 0.00 -GCC 65 30.90 18.53 19.10 31.48 0.00 0.00 -GCC 66 31.68 18.08 18.77 31.48 0.16 0.00 -GCC 67 31.02 18.35 18.78 31.86 0.00 0.00 -GCC 68 31.08 18.73 18.90 31.28 0.00 0.00 -GCC 69 31.51 18.98 18.86 30.65 0.00 0.00 -GCC 70 32.26 18.09 18.36 31.30 0.00 0.00 -GCC 71 31.76 18.76 18.44 31.04 0.00 0.00 -GCC 72 31.56 18.62 18.56 31.26 0.00 0.00 -GCC 73 31.98 18.53 18.59 30.89 0.00 0.00 -GCC 74 31.26 18.48 18.73 31.53 0.00 0.00 -GCC 75 30.81 19.09 18.57 31.52 0.05 0.00 -GCC 76 32.15 18.46 18.14 31.25 0.10 0.00 -GCC 77 31.85 18.92 18.26 30.97 0.08 0.00 -GCC 78 31.27 18.72 18.75 31.26 0.06 0.00 -GCC 79 31.08 18.55 18.83 31.54 0.08 0.00 -GCC 80 31.36 18.83 18.06 31.75 0.08 0.00 -GCC 81 31.98 18.69 18.29 31.04 0.06 0.00 -GCC 82 31.78 18.67 18.31 31.24 0.00 0.00 -GCC 83 31.06 19.08 18.16 31.70 0.00 0.00 -GCC 84 31.20 19.34 18.18 31.27 0.00 0.00 -GCC 85 31.76 18.10 18.56 31.59 0.00 0.00 -GCC 86 31.81 18.66 18.10 31.42 0.00 0.00 -GCC 87 31.88 18.34 18.38 31.40 0.00 0.00 -GCC 88 31.87 18.43 18.26 31.45 0.05 0.00 -GCC 89 32.02 18.32 18.39 31.27 0.04 0.00 -GCC 90 31.54 18.96 18.24 31.26 0.00 0.00 -GCC 91 31.66 18.61 18.75 30.98 0.08 0.00 -GCC 92 31.61 19.00 18.20 31.19 0.12 0.00 -GCC 93 31.85 18.77 18.44 30.95 0.11 0.00 -GCC 94 31.26 18.78 18.50 31.46 0.10 0.00 -GCC 95 31.84 18.66 18.12 31.37 0.14 0.00 -GCC 96 31.08 18.38 18.38 32.17 0.12 0.00 -GCC 97 31.60 19.04 18.01 31.35 0.12 0.00 -GCC 98 31.67 18.02 18.20 32.11 0.11 0.00 -GCC 99 31.36 18.64 18.53 31.46 0.12 0.00 -GCC 100 31.34 18.73 19.09 30.84 0.10 0.00 -GCC 101 31.60 18.35 18.77 31.28 0.10 0.00 -# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -LBC 1 34.31 17.48 18.48 29.74 0.00 0.00 -LBC 2 34.55 16.57 18.12 30.76 0.00 0.00 -LBC 3 32.81 17.30 17.26 32.64 0.00 0.00 -LBC 4 31.64 17.66 18.08 32.62 0.00 0.00 -LBC 5 31.78 17.45 18.90 31.86 0.00 0.00 -LBC 6 32.36 18.61 18.84 30.18 0.06 0.00 -LBC 7 32.24 17.34 18.66 31.75 0.00 0.00 -LBC 8 32.36 18.43 18.30 30.91 0.02 0.00 -LBC 9 31.33 18.97 17.91 31.80 0.03 0.00 -LBC 10 32.35 18.09 18.13 31.44 0.00 0.00 -LBC 11 31.90 18.15 18.00 31.95 0.02 0.00 -LBC 12 31.60 18.08 17.99 32.34 0.05 0.00 -LBC 13 31.83 18.04 17.79 32.34 0.00 0.00 -LBC 14 31.90 18.12 18.20 31.77 0.00 0.00 -LBC 15 31.75 18.28 18.01 31.97 0.04 0.00 -LBC 16 31.36 18.47 18.19 31.98 0.07 0.00 -LBC 17 31.67 18.25 18.16 31.92 0.08 0.00 -LBC 18 31.90 17.85 18.38 31.86 0.06 0.00 -LBC 19 31.49 18.57 17.88 32.06 0.06 0.00 -LBC 20 31.54 18.45 18.41 31.60 0.08 0.00 -LBC 21 30.68 18.87 18.24 32.21 0.09 0.00 -LBC 22 31.01 18.66 18.61 31.71 0.10 0.00 -LBC 23 31.52 18.17 18.63 31.69 0.10 0.00 -LBC 24 31.04 18.88 18.30 31.78 0.04 0.00 -LBC 25 31.57 18.46 18.32 31.66 0.10 0.00 -LBC 26 31.50 18.67 18.35 31.48 0.10 0.00 -LBC 27 31.51 18.78 18.21 31.50 0.10 0.00 -LBC 28 31.50 18.35 18.34 31.81 0.10 0.00 -LBC 29 31.09 19.14 18.28 31.50 0.09 0.00 -LBC 30 31.72 18.31 18.19 31.78 0.09 0.00 -LBC 31 31.14 18.91 18.42 31.54 0.12 0.00 -LBC 32 31.24 18.75 18.39 31.62 0.12 0.00 -LBC 33 31.46 18.53 18.21 31.80 0.14 0.00 -LBC 34 31.06 18.41 18.84 31.68 0.12 0.00 -LBC 35 31.12 18.43 18.40 32.06 0.10 0.00 -LBC 36 31.48 18.60 18.72 31.20 0.09 0.00 -LBC 37 31.75 18.72 18.27 31.27 0.08 0.00 -LBC 38 31.01 18.79 18.85 31.35 0.06 0.00 -LBC 39 31.03 18.57 18.84 31.56 0.06 0.00 -LBC 40 30.98 18.89 18.53 31.60 0.00 0.00 -LBC 41 31.28 18.66 18.94 31.12 0.00 0.00 -LBC 42 31.44 19.26 18.32 30.98 0.00 0.00 -LBC 43 32.25 18.35 18.46 30.94 0.03 0.00 -LBC 44 31.50 18.67 18.65 31.18 0.00 0.00 -LBC 45 31.48 18.84 18.37 31.31 0.02 0.00 -LBC 46 31.53 18.63 18.35 31.49 0.00 0.00 -LBC 47 31.19 19.04 18.92 30.84 0.00 0.00 -LBC 48 31.41 18.63 18.52 31.44 0.02 0.00 -LBC 49 31.53 18.11 18.96 31.40 0.07 0.00 -LBC 50 31.71 18.56 18.41 31.31 0.06 0.00 -LBC 51 31.37 18.67 18.19 31.77 0.05 0.00 -LBC 52 31.16 18.81 18.62 31.41 0.08 0.00 -LBC 53 31.53 18.86 18.02 31.59 0.09 0.00 -LBC 54 31.53 18.68 18.55 31.25 0.08 0.00 -LBC 55 31.24 19.05 18.34 31.37 0.00 0.00 -LBC 56 30.81 18.62 19.08 31.48 0.00 0.00 -LBC 57 31.46 18.52 18.61 31.42 0.00 0.00 -LBC 58 31.39 18.35 18.85 31.41 0.01 0.00 -LBC 59 31.00 18.72 18.36 31.93 0.00 0.00 -LBC 60 31.34 18.65 18.47 31.54 0.00 0.00 -LBC 61 31.85 18.71 18.46 30.98 0.00 0.00 -LBC 62 32.15 18.86 18.04 30.95 0.00 0.00 -LBC 63 31.02 18.42 18.90 31.66 0.00 0.00 -LBC 64 31.84 18.32 18.35 31.50 0.00 0.00 -LBC 65 30.90 18.53 19.10 31.48 0.00 0.00 -LBC 66 31.68 18.08 18.77 31.48 0.16 0.00 -LBC 67 31.02 18.35 18.78 31.86 0.00 0.00 -LBC 68 31.08 18.73 18.90 31.28 0.00 0.00 -LBC 69 31.51 18.98 18.86 30.65 0.00 0.00 -LBC 70 32.26 18.09 18.36 31.30 0.00 0.00 -LBC 71 31.76 18.76 18.44 31.04 0.00 0.00 -LBC 72 31.56 18.62 18.56 31.26 0.00 0.00 -LBC 73 31.98 18.53 18.59 30.89 0.00 0.00 -LBC 74 31.26 18.48 18.73 31.53 0.00 0.00 -LBC 75 30.81 19.09 18.57 31.52 0.05 0.00 -LBC 76 32.15 18.46 18.14 31.25 0.10 0.00 -LBC 77 31.85 18.92 18.26 30.97 0.08 0.00 -LBC 78 31.27 18.72 18.75 31.26 0.06 0.00 -LBC 79 31.08 18.55 18.83 31.54 0.08 0.00 -LBC 80 31.36 18.83 18.06 31.75 0.08 0.00 -LBC 81 31.98 18.69 18.29 31.04 0.06 0.00 -LBC 82 31.78 18.67 18.31 31.24 0.00 0.00 -LBC 83 31.06 19.08 18.16 31.70 0.00 0.00 -LBC 84 31.20 19.34 18.18 31.27 0.00 0.00 -LBC 85 31.76 18.10 18.56 31.59 0.00 0.00 -LBC 86 31.81 18.66 18.10 31.42 0.00 0.00 -LBC 87 31.88 18.34 18.38 31.40 0.00 0.00 -LBC 88 31.87 18.43 18.26 31.45 0.05 0.00 -LBC 89 32.02 18.32 18.39 31.27 0.04 0.00 -LBC 90 31.54 18.96 18.24 31.26 0.00 0.00 -LBC 91 31.66 18.61 18.75 30.98 0.08 0.00 -LBC 92 31.61 19.00 18.20 31.19 0.12 0.00 -LBC 93 31.85 18.77 18.44 30.95 0.11 0.00 -LBC 94 31.26 18.78 18.50 31.46 0.10 0.00 -LBC 95 31.84 18.66 18.12 31.37 0.14 0.00 -LBC 96 31.08 18.38 18.38 32.17 0.12 0.00 -LBC 97 31.60 19.04 18.01 31.35 0.12 0.00 -LBC 98 31.67 18.02 18.20 32.11 0.11 0.00 -LBC 99 31.36 18.64 18.53 31.46 0.12 0.00 -LBC 100 31.34 18.73 19.09 30.84 0.10 0.00 -LBC 101 31.60 18.35 18.77 31.28 0.10 0.00 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%] +GCC 1 34.31 17.48 18.48 29.74 +GCC 2 34.55 16.57 18.12 30.75 +GCC 3 32.81 17.30 17.26 32.64 +GCC 4 31.64 17.66 18.08 32.62 +GCC 5 31.78 17.46 18.90 31.86 +GCC 6 32.34 18.60 18.84 30.22 +GCC 7 32.24 17.35 18.66 31.75 +GCC 8 32.35 18.43 18.30 30.92 +GCC 9 31.32 18.96 17.90 31.82 +GCC 10 32.35 18.09 18.13 31.43 +GCC 11 31.89 18.15 18.00 31.96 +GCC 12 31.58 18.07 17.98 32.37 +GCC 13 31.83 18.04 17.79 32.34 +GCC 14 31.91 18.12 18.20 31.77 +GCC 15 31.73 18.27 18.00 32.00 +GCC 16 31.34 18.46 18.18 32.02 +GCC 17 31.64 18.24 18.15 31.97 +GCC 18 31.88 17.84 18.37 31.90 +GCC 19 31.47 18.56 17.87 32.10 +GCC 20 31.52 18.44 18.39 31.65 +GCC 21 30.65 18.85 18.22 32.27 +GCC 22 30.98 18.64 18.60 31.77 +GCC 23 31.49 18.15 18.61 31.75 +GCC 24 31.03 18.87 18.29 31.81 +GCC 25 31.54 18.44 18.30 31.73 +GCC 26 31.47 18.65 18.33 31.55 +GCC 27 31.48 18.76 18.19 31.57 +GCC 28 31.47 18.33 18.32 31.88 +GCC 29 31.06 19.12 18.26 31.56 +GCC 30 31.69 18.29 18.18 31.84 +GCC 31 31.10 18.88 18.40 31.62 +GCC 32 31.21 18.73 18.37 31.70 +GCC 33 31.42 18.50 18.18 31.89 +GCC 34 31.03 18.39 18.82 31.76 +GCC 35 31.08 18.41 18.38 32.13 +GCC 36 31.45 18.58 18.70 31.27 +GCC 37 31.72 18.71 18.25 31.32 +GCC 38 30.99 18.78 18.84 31.39 +GCC 39 31.01 18.56 18.83 31.60 +GCC 40 30.98 18.89 18.53 31.60 +GCC 41 31.28 18.66 18.94 31.12 +GCC 42 31.44 19.26 18.32 30.98 +GCC 43 32.24 18.35 18.45 30.96 +GCC 44 31.50 18.67 18.65 31.18 +GCC 45 31.47 18.84 18.37 31.32 +GCC 46 31.53 18.63 18.35 31.49 +GCC 47 31.19 19.04 18.92 30.84 +GCC 48 31.40 18.62 18.52 31.45 +GCC 49 31.50 18.10 18.95 31.45 +GCC 50 31.70 18.55 18.40 31.35 +GCC 51 31.35 18.66 18.18 31.80 +GCC 52 31.13 18.80 18.60 31.47 +GCC 53 31.50 18.84 18.01 31.65 +GCC 54 31.50 18.66 18.53 31.30 +GCC 55 31.24 19.05 18.34 31.37 +GCC 56 30.81 18.62 19.08 31.48 +GCC 57 31.46 18.52 18.61 31.42 +GCC 58 31.39 18.35 18.85 31.41 +GCC 59 31.00 18.72 18.36 31.93 +GCC 60 31.34 18.65 18.47 31.54 +GCC 61 31.85 18.71 18.46 30.98 +GCC 62 32.15 18.86 18.04 30.95 +GCC 63 31.02 18.42 18.90 31.66 +GCC 64 31.84 18.32 18.35 31.50 +GCC 65 30.90 18.53 19.10 31.48 +GCC 66 31.63 18.05 18.74 31.58 +GCC 67 31.02 18.35 18.78 31.86 +GCC 68 31.08 18.73 18.90 31.28 +GCC 69 31.51 18.98 18.86 30.65 +GCC 70 32.26 18.09 18.36 31.30 +GCC 71 31.76 18.76 18.44 31.04 +GCC 72 31.56 18.62 18.56 31.26 +GCC 73 31.98 18.53 18.59 30.89 +GCC 74 31.26 18.48 18.73 31.53 +GCC 75 30.80 19.08 18.56 31.56 +GCC 76 32.12 18.44 18.12 31.32 +GCC 77 31.83 18.90 18.25 31.02 +GCC 78 31.25 18.71 18.74 31.30 +GCC 79 31.06 18.54 18.81 31.59 +GCC 80 31.33 18.82 18.05 31.80 +GCC 81 31.96 18.68 18.28 31.08 +GCC 82 31.78 18.67 18.31 31.24 +GCC 83 31.06 19.08 18.16 31.70 +GCC 84 31.20 19.34 18.18 31.27 +GCC 85 31.76 18.10 18.56 31.59 +GCC 86 31.81 18.66 18.10 31.42 +GCC 87 31.88 18.34 18.38 31.40 +GCC 88 31.85 18.42 18.25 31.48 +GCC 89 32.01 18.31 18.38 31.30 +GCC 90 31.54 18.96 18.24 31.26 +GCC 91 31.64 18.60 18.73 31.03 +GCC 92 31.57 18.98 18.18 31.27 +GCC 93 31.81 18.75 18.42 31.02 +GCC 94 31.23 18.76 18.48 31.53 +GCC 95 31.80 18.64 18.10 31.46 +GCC 96 31.04 18.36 18.36 32.24 +GCC 97 31.56 19.01 17.99 31.44 +GCC 98 31.64 18.00 18.18 32.18 +GCC 99 31.32 18.62 18.51 31.54 +GCC 100 31.30 18.71 19.07 30.92 +GCC 101 31.56 18.33 18.75 31.35 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count -RL 101 25000 -# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count -# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +RL 101 25001 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 14 8 ID 2 5 2 @@ -367,17 +459,17 @@ IC 79 0 1 0 0 IC 83 0 1 0 0 IC 93 0 1 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. -COV [1-1] 1 30382 -COV [2-2] 2 5584 -COV [3-3] 3 1274 -COV [4-4] 4 353 -COV [5-5] 5 145 -COV [6-6] 6 26 +COV [1-1] 1 31452 +COV [2-2] 2 5791 +COV [3-3] 3 1403 +COV [4-4] 4 464 +COV [5-5] 5 189 +COV [6-6] 6 38 COV [7-7] 7 8 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 16.667 0.000 0.000 0.000 0.000 0.000 -GCD 37.0 25.000 0.222 0.222 0.222 0.222 0.222 -GCD 38.0 41.667 0.182 0.182 0.182 0.187 0.187 -GCD 39.0 83.333 0.101 0.101 0.152 0.247 0.268 -GCD 41.0 91.667 0.177 0.177 0.177 0.177 0.177 -GCD 42.0 100.000 0.242 0.242 0.242 0.242 0.242 +GCD 37.0 25.000 0.220 0.220 0.220 0.220 0.220 +GCD 38.0 41.667 0.180 0.180 0.180 0.185 0.185 +GCD 39.0 83.333 0.100 0.100 0.150 0.245 0.265 +GCD 41.0 91.667 0.175 0.175 0.175 0.175 0.175 +GCD 42.0 100.000 0.240 0.240 0.240 0.240 0.240 diff --git a/results/bwa/B.sorted.bam b/results/bwa/B.sorted.bam index 198f70e..8c5b755 100644 Binary files a/results/bwa/B.sorted.bam and b/results/bwa/B.sorted.bam differ diff --git a/results/bwa/B.stats.txt b/results/bwa/B.stats.txt index 30dbb51..6d0271f 100644 --- a/results/bwa/B.stats.txt +++ b/results/bwa/B.stats.txt @@ -1,17 +1,16 @@ -# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats -# This file contains statistics for all reads. +# This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats # The command line was: stats B.sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 95d7cf2e 356c45e0 861b8a9a # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. -SN raw total sequences: 25000 +SN raw total sequences: 25001 SN filtered sequences: 0 -SN sequences: 25000 +SN sequences: 25001 SN is sorted: 1 -SN 1st fragments: 25000 +SN 1st fragments: 25001 SN last fragments: 0 -SN reads mapped: 500 +SN reads mapped: 501 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 24500 SN reads properly paired: 0 # proper-pair bit set @@ -20,21 +19,15 @@ SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 4 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 1 -SN total length: 2525000 # ignores clipping -SN total first fragment length: 2525000 # ignores clipping -SN total last fragment length: 0 # ignores clipping -SN bases mapped: 50500 # ignores clipping -SN bases mapped (cigar): 47348 # more accurate +SN total length: 2525042 # ignores clipping +SN bases mapped: 50542 # ignores clipping +SN bases mapped (cigar): 47390 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 -SN mismatches: 1107 # from NM fields -SN error rate: 2.338008e-02 # mismatches / bases mapped (cigar) -SN average length: 101 -SN average first fragment length: 101 -SN average last fragment length: 0 +SN mismatches: 1109 # from NM fields +SN error rate: 2.340156e-02 # mismatches / bases mapped (cigar) +SN average length: 100 SN maximum length: 101 -SN maximum first fragment length: 0 -SN maximum last fragment length: 0 SN average quality: 31.0 SN insert size average: 0.0 SN insert size standard deviation: 0.0 @@ -42,11 +35,214 @@ SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 -SN percentage of properly paired reads (%): 0.0 -# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. +# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. -# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. +FFQ 1 0 0 278 0 0 0 0 0 0 0 818 0 0 0 0 0 690 0 0 0 0 0 41 446 1 592 768 690 951 0 2526 8981 0 2808 5411 0 0 0 0 0 0 0 0 +FFQ 2 0 0 278 0 0 0 0 0 0 0 787 0 0 0 0 0 700 0 0 0 0 0 78 385 1 593 732 822 794 0 2119 8398 0 2180 7134 0 0 0 0 0 0 0 0 +FFQ 3 0 0 287 0 0 0 0 0 0 0 942 0 0 0 0 0 791 0 0 0 0 0 148 428 0 519 748 1021 723 0 1991 8332 0 1699 7371 1 0 0 0 0 0 0 0 +FFQ 4 0 0 300 0 0 0 0 0 0 0 702 0 0 0 0 0 212 0 0 521 0 0 86 0 0 377 295 21 686 0 664 12 1157 1554 0 6976 0 11437 1 0 0 0 0 +FFQ 5 0 0 331 0 0 0 0 0 0 0 695 0 0 0 0 0 203 0 0 451 0 0 90 0 0 406 355 18 740 0 704 5 1129 1508 0 6790 0 11576 0 0 0 0 0 +FFQ 6 0 0 363 0 0 0 0 0 122 0 632 331 0 0 1 43 50 412 121 188 0 11 8 186 0 464 413 65 496 242 866 104 1351 1529 0 6013 586 10404 0 0 0 0 0 +FFQ 7 0 0 379 0 0 0 0 0 92 1 555 263 0 0 0 55 40 531 86 140 0 6 11 130 1 407 341 65 601 160 742 113 1269 1440 0 6232 684 10657 0 0 0 0 0 +FFQ 8 0 0 397 0 0 1 2 0 66 0 349 184 0 0 0 43 26 451 53 82 0 9 8 89 1 312 275 78 493 155 651 134 1232 1435 0 6367 737 11371 0 0 0 0 0 +FFQ 9 0 0 415 0 0 0 0 0 86 0 456 212 0 0 0 48 31 392 74 130 0 21 9 118 0 374 92 396 381 188 708 83 1020 836 700 2322 0 3810 1463 10636 0 0 0 +FFQ 10 0 0 434 0 0 1 0 0 80 0 375 188 0 0 0 42 38 356 72 98 2 12 9 108 0 350 102 477 316 138 705 96 1050 788 689 2253 0 3776 1378 11068 0 0 0 +FFQ 11 0 0 459 0 0 0 0 2 85 0 393 175 2 0 1 34 47 383 82 102 0 15 7 103 2 366 108 561 185 199 745 91 1094 787 672 2324 0 3737 1480 10760 0 0 0 +FFQ 12 0 0 480 0 0 0 1 3 69 0 357 170 1 0 0 38 28 393 64 100 1 12 7 104 1 369 79 698 42 154 725 102 1027 735 724 2217 0 3834 1371 11095 0 0 0 +FFQ 13 0 0 500 0 0 1 0 2 72 4 357 206 1 0 0 52 45 344 75 91 0 10 8 120 2 322 89 679 17 175 696 93 1057 780 683 2277 0 3664 1608 10971 0 0 0 +FFQ 14 0 0 517 0 0 0 0 2 80 3 358 153 1 0 0 5 70 343 82 98 0 13 9 31 75 343 80 726 16 187 328 398 811 827 740 416 1428 1193 3056 1968 4204 6440 0 +FFQ 15 0 0 535 0 0 1 1 2 86 6 344 187 0 0 0 3 65 341 91 98 0 13 5 45 92 340 90 692 19 166 354 450 807 803 722 431 1430 1176 3065 1982 4098 6461 0 +FFQ 16 0 0 559 0 0 0 0 1 75 4 428 207 2 0 0 5 73 367 90 123 1 9 10 40 105 342 104 693 26 203 356 404 820 814 788 407 1436 1160 3032 1918 4072 6327 0 +FFQ 17 0 0 577 0 0 1 1 2 127 10 571 319 0 0 0 4 90 362 129 218 2 22 13 45 211 441 113 818 33 267 395 547 880 974 780 466 1576 1212 3146 1671 3956 5022 0 +FFQ 18 0 0 594 0 0 0 1 1 91 12 447 207 1 1 1 12 78 465 73 122 1 8 7 60 96 392 72 799 25 179 407 434 962 844 896 454 1508 1367 3174 1986 3920 5304 0 +FFQ 19 0 0 608 0 0 0 3 3 86 10 377 169 2 0 1 5 55 35 457 122 0 13 8 34 89 350 76 768 20 154 397 409 862 518 1117 437 1259 1272 2451 2635 4370 5829 0 +FFQ 20 0 0 634 0 0 0 2 2 77 27 369 167 1 1 2 9 72 26 387 100 2 7 5 60 102 304 104 696 16 154 361 397 852 517 992 450 1322 1230 2493 2574 4420 6067 0 +FFQ 21 0 0 652 0 0 0 1 1 86 35 362 150 0 1 3 8 60 42 365 106 0 11 8 48 125 308 89 655 34 195 388 429 762 512 1090 484 1264 1171 2478 2650 4327 6101 0 +FFQ 22 0 0 673 0 0 0 1 5 87 28 367 148 0 1 0 18 78 70 361 117 2 26 6 56 178 308 107 661 28 164 424 453 772 555 1038 474 1314 1201 2560 2518 4318 5884 0 +FFQ 23 0 0 704 0 0 0 2 3 105 46 446 152 2 3 2 14 109 85 366 153 0 15 10 62 217 305 113 703 25 186 453 445 826 567 1059 467 1280 1192 2532 2591 3990 5771 0 +FFQ 24 0 0 723 0 0 0 5 3 96 58 350 143 1 3 0 25 103 97 330 121 1 9 4 73 207 330 97 682 32 185 530 428 827 548 1037 465 1160 1303 2500 2581 3803 6141 0 +FFQ 25 0 0 754 0 0 0 3 5 126 72 346 118 0 3 2 19 132 117 283 115 1 17 9 80 200 289 95 636 28 159 504 429 739 553 1028 469 1252 1326 2439 2563 3730 6360 0 +FFQ 26 0 0 781 0 0 1 1 2 130 99 363 104 1 1 2 29 132 126 247 114 0 26 16 87 249 293 104 618 25 160 524 408 709 545 996 501 1241 1264 2551 2491 3850 6210 0 +FFQ 27 0 0 810 0 0 2 2 9 211 184 453 94 0 0 1 35 189 164 257 148 1 30 16 99 330 295 134 671 28 244 596 557 735 609 1108 563 1299 1239 2624 2216 3868 5180 0 +FFQ 28 0 0 830 0 0 0 3 3 135 147 287 48 0 5 2 46 192 184 145 98 2 10 13 77 264 296 89 568 19 148 718 434 703 538 1079 511 1255 1360 2509 2741 3927 5615 0 +FFQ 29 0 0 844 0 0 0 3 4 161 167 282 41 2 2 2 56 179 149 120 111 2 23 10 84 329 285 98 529 22 162 696 423 584 556 1028 636 1152 1318 2625 2410 4055 5851 0 +FFQ 30 0 0 866 0 0 1 2 6 132 180 208 23 1 1 5 62 177 154 85 100 5 30 11 92 298 269 85 464 26 174 708 396 547 598 1019 642 1169 1281 2652 2358 4172 6002 0 +FFQ 31 0 0 895 0 0 1 5 9 143 226 202 12 1 7 6 68 213 130 77 129 1 38 14 115 335 287 115 419 33 189 741 458 486 610 1046 669 1278 1190 2793 2162 4199 5699 0 +FFQ 32 0 0 924 0 0 0 7 17 153 261 187 8 5 4 7 77 192 104 86 106 5 37 13 105 394 308 109 454 27 193 835 470 441 687 976 708 1188 1195 2860 2136 4203 5519 0 +FFQ 33 0 0 964 0 0 1 8 17 180 283 129 1 3 6 6 101 237 89 91 135 7 40 14 116 351 346 114 459 43 226 899 478 372 684 978 830 1221 1284 2810 2090 4117 5271 0 +FFQ 34 0 0 1005 0 0 0 9 16 178 335 108 1 8 8 9 121 236 62 86 138 2 47 23 111 379 362 102 347 66 174 887 501 340 693 985 811 1123 1275 3034 2104 4093 5222 0 +FFQ 35 0 0 1040 0 0 1 10 17 196 349 70 0 6 11 8 130 233 54 85 116 5 47 14 104 379 379 117 351 48 202 1001 497 313 669 895 931 1127 1267 2969 2043 4276 5041 0 +FFQ 36 0 0 1084 0 0 0 10 20 164 363 41 2 4 9 13 148 218 37 63 99 6 50 24 106 368 410 96 273 56 153 971 449 296 731 928 914 1052 1330 3004 2070 4252 5187 0 +FFQ 37 0 0 1135 0 0 0 7 20 197 446 22 2 10 5 10 173 232 18 85 137 6 59 25 124 420 393 130 310 57 221 957 488 311 796 848 1002 998 1225 3070 1897 4228 4937 0 +FFQ 38 0 0 1166 0 0 0 9 22 159 355 6 1 5 11 13 192 202 23 74 110 7 56 30 111 383 403 115 270 77 173 1056 469 231 851 838 1012 934 1305 3070 1945 4268 5049 0 +FFQ 39 0 0 1208 0 0 0 9 24 161 368 7 0 5 8 26 163 168 14 77 122 9 64 30 107 431 346 136 286 77 175 1008 479 282 865 792 1051 875 1357 2980 1966 4302 5023 0 +FFQ 40 0 0 1275 0 0 1 13 30 181 383 7 3 9 20 29 202 154 14 84 118 10 68 29 116 390 323 150 285 75 192 1000 496 289 938 747 1089 860 1337 3020 1995 4268 4801 0 +FFQ 41 0 0 1335 0 0 0 15 25 154 362 3 2 9 14 23 214 135 14 70 139 13 59 47 122 398 307 133 321 103 220 986 508 251 945 753 1160 884 1365 3056 2025 4171 4660 0 +FFQ 42 0 0 1403 0 0 1 5 34 169 376 1 3 13 22 25 228 135 9 71 141 9 70 50 139 417 304 136 317 119 229 966 557 283 970 693 1144 880 1269 3053 2008 4166 4586 0 +FFQ 43 0 0 1485 0 0 2 21 67 214 439 2 4 13 23 35 238 99 20 110 176 14 83 61 178 445 253 168 338 123 260 953 574 314 1083 813 1228 820 1333 3035 1779 4049 4148 0 +FFQ 44 0 0 1557 0 0 3 33 114 301 624 5 6 19 41 60 286 105 27 115 200 19 100 62 187 557 263 183 429 167 316 1060 595 330 1115 764 1169 937 1313 2981 1780 3679 3498 0 +FFQ 45 0 0 1600 0 0 2 16 58 191 342 1 8 27 41 67 315 79 25 81 127 23 63 99 201 498 256 195 288 211 193 1124 542 299 1222 715 1194 764 1516 2999 1996 3954 3668 0 +FFQ 46 0 0 1667 0 0 2 30 69 135 343 2 6 15 44 60 251 58 15 68 134 16 50 92 193 458 221 196 281 192 197 998 549 320 1213 742 1279 812 1486 3077 2001 3884 3844 0 +FFQ 47 0 0 1746 0 0 0 34 99 217 414 2 3 29 54 76 237 51 24 102 168 24 84 83 245 484 186 228 361 212 262 891 576 346 1187 718 1165 884 1407 3082 1849 3842 3628 0 +FFQ 48 0 0 1827 0 0 1 26 78 211 338 3 4 24 73 68 243 36 25 87 174 32 71 99 255 480 146 207 317 274 237 929 600 398 1189 734 1187 931 1457 2998 1914 3789 3538 0 +FFQ 49 0 0 1918 0 0 0 38 84 203 322 1 2 24 60 67 215 33 21 89 132 43 85 115 246 467 136 244 302 299 257 940 677 352 1141 774 1088 977 1497 2700 2236 3749 3466 0 +FFQ 50 0 0 2004 0 0 4 36 93 172 314 2 7 22 55 73 223 16 30 76 137 47 74 111 253 423 113 235 302 337 247 830 629 386 1131 791 1069 974 1602 2611 2236 3811 3524 0 +FFQ 51 0 0 2085 0 0 1 59 136 279 388 6 11 41 114 122 284 26 46 111 169 76 90 193 424 680 164 345 381 597 303 1299 803 458 1842 987 1366 1001 2291 2726 2420 1998 678 0 +FFQ 52 0 0 2145 0 0 2 37 130 238 287 6 9 47 128 116 236 18 28 84 129 65 89 192 400 485 96 319 283 546 248 1075 787 419 1496 980 1348 1021 2142 2891 3086 2597 795 0 +FFQ 53 0 0 2195 0 0 0 47 86 198 231 1 14 48 138 110 131 18 27 87 121 54 66 175 353 386 73 347 274 491 261 824 760 438 1241 936 1141 1051 1693 2896 2888 3514 1686 0 +FFQ 54 0 0 2266 0 0 1 37 85 169 178 1 6 40 102 92 116 12 27 83 137 56 57 162 290 314 62 352 231 494 243 680 719 419 1115 945 1095 1086 1619 2740 2530 3726 2713 0 +FFQ 55 0 0 2340 0 0 1 63 121 260 225 3 9 41 103 107 102 28 36 110 177 52 79 191 326 249 178 376 296 497 295 574 777 479 1032 1079 976 1167 1435 2846 2183 3477 2710 0 +FFQ 56 0 0 2440 0 0 3 65 152 335 202 6 11 50 121 113 90 21 31 103 177 66 84 206 351 248 149 413 269 565 353 580 807 497 967 1079 1051 1194 1405 2596 2149 3321 2730 0 +FFQ 57 0 0 2498 0 0 2 91 202 500 264 4 12 64 195 121 88 22 41 153 209 101 95 278 415 232 180 469 298 627 359 539 815 577 965 1095 973 1119 1373 2458 1979 3015 2572 0 +FFQ 58 0 0 2548 0 0 3 40 127 262 157 3 16 64 220 114 83 16 31 108 120 112 94 268 410 198 128 440 230 774 262 537 847 478 976 1142 973 1187 1494 2418 2306 3051 2763 0 +FFQ 59 0 0 2602 0 0 2 48 101 230 86 4 13 50 194 84 55 11 23 92 100 92 81 234 354 158 122 434 164 703 311 472 859 492 909 1211 1019 1248 1543 2416 2304 3088 3091 0 +FFQ 60 0 0 2666 0 0 3 73 158 409 117 3 16 59 166 84 39 18 35 140 161 91 102 280 368 134 146 502 218 634 347 422 884 588 790 1309 1040 1295 1384 2264 2125 2935 2995 0 +FFQ 61 0 0 2735 0 0 2 47 116 257 61 6 23 44 203 93 43 14 18 116 122 93 93 306 319 135 98 476 162 768 350 383 834 561 803 1294 1075 1316 1528 2255 2322 2841 3088 0 +FFQ 62 0 0 2784 0 0 3 118 313 735 126 5 23 60 253 103 31 47 42 213 236 109 118 355 316 156 249 602 291 702 525 376 1010 672 800 1342 1027 1373 1222 2187 1758 2556 2162 0 +FFQ 63 0 0 2826 0 0 3 76 206 476 75 10 40 58 332 116 42 7 38 157 133 158 134 429 365 124 145 645 162 871 420 447 1025 601 814 1460 1112 1422 1353 1948 2132 2427 2211 0 +FFQ 64 0 0 2855 0 0 1 42 130 297 35 8 32 61 240 72 28 13 23 110 92 155 100 373 295 128 132 632 129 892 406 433 938 650 826 1552 1185 1596 1509 1924 2331 2481 2294 0 +FFQ 65 0 0 2892 0 0 4 49 106 251 33 11 26 48 204 48 13 16 32 97 76 131 86 291 240 80 140 566 130 743 430 488 950 717 764 1609 1342 1660 1537 1933 2469 2492 2296 0 +FFQ 66 0 0 2938 0 0 3 40 156 311 19 11 26 35 173 54 6 13 28 134 112 104 100 355 218 85 145 631 136 654 493 433 976 682 720 1624 1444 1781 1492 1839 2344 2401 2284 0 +FFQ 67 0 0 2989 0 0 3 30 131 260 15 5 26 47 176 38 13 20 23 111 114 139 109 328 211 68 166 615 106 720 494 477 929 738 703 1703 1601 1757 1518 1763 2464 2166 2224 0 +FFQ 68 0 0 3040 0 0 2 35 96 195 11 5 34 26 128 33 6 17 19 116 107 117 89 330 155 65 141 667 138 650 511 477 954 740 704 1743 1676 1955 1655 1692 2424 2110 2137 0 +FFQ 69 0 0 3099 0 0 0 34 125 209 6 1 23 24 145 25 10 14 23 161 75 127 105 329 142 52 129 651 123 604 541 494 1010 797 771 1802 1810 1887 1767 1654 2341 1999 1891 0 +FFQ 70 0 0 3154 0 0 2 33 130 194 5 10 32 29 138 33 4 14 25 144 89 131 112 320 129 100 158 665 113 598 547 504 951 811 716 1914 2100 1935 1787 1443 2357 1817 1756 0 +FFQ 71 0 0 3223 0 0 4 29 135 180 8 6 28 24 129 26 7 18 21 146 64 134 117 291 120 105 194 696 126 536 593 563 981 792 757 1998 2169 2061 1819 1401 2278 1682 1539 0 +FFQ 72 0 0 3290 0 0 5 40 141 191 4 9 27 24 131 41 9 25 27 175 97 169 131 300 114 106 176 733 125 527 673 570 1010 885 748 2055 2234 2045 1815 1276 2176 1504 1392 0 +FFQ 73 0 0 3386 0 0 8 41 189 224 4 10 40 37 131 24 9 22 32 190 75 165 133 312 111 119 207 783 130 498 710 583 996 878 864 2184 2377 2084 1728 1171 2034 1313 1198 0 +FFQ 74 0 0 3474 0 0 4 53 248 219 3 12 38 31 149 31 15 18 35 206 83 199 127 291 113 121 225 797 158 478 753 592 1113 884 852 2160 2427 2149 1737 1069 1979 1153 1004 0 +FFQ 75 0 0 3563 0 0 7 55 249 239 5 15 61 38 158 33 11 23 37 237 68 204 171 298 111 144 233 907 150 479 830 643 1041 917 842 2364 2507 2123 1661 947 1784 970 875 0 +FFQ 76 0 0 3647 0 0 13 113 589 462 5 36 87 48 204 39 17 29 77 390 134 289 171 381 140 174 370 1029 198 481 976 666 1195 969 907 2351 2264 1848 1355 773 1269 762 542 0 +FFQ 77 0 0 3704 0 0 9 61 358 241 1 27 119 56 235 36 18 18 41 251 92 350 199 385 137 186 312 1083 157 538 922 735 1181 1029 874 2533 2457 1907 1417 671 1486 659 515 0 +FFQ 78 0 0 3768 0 0 8 41 234 160 0 36 94 43 188 19 21 25 52 220 80 319 179 312 126 165 304 1011 163 460 994 789 1156 1046 977 2692 2728 1984 1469 605 1421 620 491 0 +FFQ 79 0 0 3833 0 0 8 45 239 152 1 27 68 40 135 28 15 19 42 263 79 284 160 245 121 155 306 934 203 423 975 759 1191 1069 998 2819 2997 2017 1542 543 1239 566 460 0 +FFQ 80 0 0 3881 0 0 8 23 171 101 0 11 62 31 115 24 5 12 37 220 59 287 125 214 138 139 296 858 187 364 1006 696 1169 1100 972 2993 3319 2076 1643 518 1191 509 440 0 +FFQ 81 0 0 3961 0 0 5 32 217 100 0 24 37 27 75 20 25 17 40 211 55 259 107 170 116 128 298 852 211 300 979 699 1177 1134 1007 3069 3613 2069 1596 439 1062 441 428 0 +FFQ 82 0 0 4036 0 0 17 49 378 132 0 31 74 46 72 34 25 23 52 325 73 279 155 184 119 160 391 908 229 291 1075 684 1210 1093 1057 3190 3461 1864 1351 404 856 378 294 0 +FFQ 83 0 0 4101 0 0 16 41 358 115 1 21 70 46 97 21 20 18 70 273 81 338 139 165 150 182 446 957 208 284 1067 688 1299 1147 1060 3257 3486 1839 1215 332 764 355 273 0 +FFQ 84 0 0 4189 0 0 12 20 268 74 0 40 65 43 79 20 25 9 46 223 69 326 132 139 150 176 392 910 219 270 1093 696 1290 1129 1037 3435 3904 1794 1152 283 714 321 256 0 +FFQ 85 0 0 4267 0 0 13 21 254 59 0 23 50 33 69 14 30 15 59 204 57 256 114 106 135 173 410 767 208 226 1108 711 1314 1209 1029 3591 4117 1829 1131 265 613 269 251 0 +FFQ 86 0 0 4367 0 0 11 27 308 62 0 28 63 35 51 17 27 32 45 227 83 323 112 104 145 213 471 754 273 217 1103 680 1314 1205 1047 3609 4142 1728 1011 217 517 249 183 0 +FFQ 87 0 0 4480 0 0 16 21 304 48 0 36 74 34 41 22 25 24 63 253 71 395 107 97 157 203 469 747 246 209 1128 636 1397 1193 1045 3692 4185 1650 899 230 422 223 158 0 +FFQ 88 0 0 4593 0 0 18 28 314 41 0 34 71 32 43 15 25 22 40 239 104 362 92 91 154 195 502 732 279 198 1115 670 1387 1242 1069 3737 4277 1505 796 186 425 210 157 0 +FFQ 89 0 0 4701 0 0 23 22 331 46 0 43 74 44 36 17 38 21 63 272 109 364 80 80 158 194 569 715 279 157 1180 646 1322 1196 1115 3679 4404 1443 720 171 370 164 154 0 +FFQ 90 0 0 4819 0 0 18 20 265 28 0 44 74 41 34 18 25 16 59 222 120 375 71 51 170 218 555 644 314 175 1174 635 1381 1279 1066 3885 4390 1383 643 153 320 158 157 0 +FFQ 91 0 0 4976 0 0 20 23 295 33 0 42 68 38 15 15 37 14 72 285 110 351 71 58 185 214 554 601 317 159 1129 621 1440 1262 1025 3813 4572 1343 549 124 296 139 134 0 +FFQ 92 0 0 5115 0 0 23 22 344 24 0 60 74 36 20 14 38 28 64 294 118 349 57 41 199 234 610 590 349 138 1144 664 1412 1239 1040 3807 4502 1248 519 104 256 124 100 0 +FFQ 93 0 0 5260 0 0 23 20 270 34 0 61 64 32 17 10 41 24 79 240 140 357 50 46 178 177 676 467 325 136 1212 660 1345 1271 1123 3797 4654 1183 468 112 227 126 95 0 +FFQ 94 0 0 5439 0 0 17 14 234 22 0 38 46 25 11 13 29 14 64 212 139 333 47 35 173 206 603 395 348 125 1131 664 1412 1307 1014 4011 4800 1139 417 81 240 107 95 0 +FFQ 95 0 0 5668 0 0 13 9 184 16 0 33 29 19 23 10 38 15 46 253 135 279 31 35 157 214 632 382 391 117 1126 592 1419 1296 1070 3942 4924 1058 371 77 221 90 85 0 +FFQ 96 0 0 5930 0 0 17 8 160 12 0 24 24 10 19 4 28 13 60 194 144 280 24 29 162 194 604 344 405 87 1100 678 1392 1290 1099 4022 4853 1031 339 63 226 67 64 0 +FFQ 97 0 0 6297 0 0 16 5 154 6 0 28 33 7 20 2 33 17 55 228 126 253 18 22 195 211 706 333 378 98 1207 661 1447 1328 1009 3955 4530 949 318 44 210 51 50 0 +FFQ 98 0 0 6632 0 0 8 1 109 9 0 25 15 5 13 2 26 19 56 214 135 225 20 21 159 211 673 293 413 73 1204 667 1497 1297 1009 4027 4430 900 310 52 171 46 33 0 +FFQ 99 0 0 7043 0 0 1 0 32 3 0 15 4 1 0 1 27 12 40 205 131 193 16 28 158 212 689 270 371 62 1168 602 1422 1358 1051 4017 4487 842 281 40 171 26 21 0 +FFQ 100 0 0 7465 0 0 0 0 0 0 0 0 0 0 0 0 17 12 40 169 112 177 9 19 111 169 616 205 353 51 1131 625 1496 1379 1087 4095 4381 766 277 48 162 14 14 0 +FFQ 101 0 0 8027 0 0 0 0 0 0 0 0 0 0 0 0 67 46 85 547 254 323 18 50 241 344 1172 346 565 88 1734 736 1795 1570 909 3625 1908 329 121 15 82 2 1 0 +FFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. +LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.25 10 GCF 1.01 50 @@ -68,9 +264,10 @@ GCF 16.08 73 GCF 17.09 59 GCF 18.59 72 GCF 20.10 66 -GCF 21.11 85 -GCF 22.11 105 -GCF 23.12 132 +GCF 20.85 85 +GCF 21.36 86 +GCF 22.11 106 +GCF 23.12 133 GCF 24.12 146 GCF 25.13 176 GCF 26.13 225 @@ -130,216 +327,111 @@ GCF 85.43 1 GCF 88.94 0 GCF 92.46 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. -# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -GCC 1 33.85 17.65 18.44 30.06 0.00 0.00 -GCC 2 35.07 16.30 17.58 31.05 0.00 0.00 -GCC 3 32.25 17.26 17.67 32.82 0.00 0.00 -GCC 4 31.53 17.94 18.41 32.12 0.00 0.00 -GCC 5 32.47 17.01 18.72 31.80 0.00 0.00 -GCC 6 31.93 19.23 18.60 30.24 0.04 0.00 -GCC 7 32.05 17.49 19.16 31.30 0.00 0.00 -GCC 8 31.60 18.49 18.32 31.59 0.01 0.00 -GCC 9 31.46 18.40 17.96 32.18 0.01 0.00 -GCC 10 32.14 18.01 18.87 30.98 0.00 0.00 -GCC 11 32.02 17.56 17.86 32.56 0.01 0.00 -GCC 12 32.06 17.61 18.01 32.32 0.04 0.00 -GCC 13 31.86 17.67 18.59 31.88 0.00 0.00 -GCC 14 31.72 17.68 18.44 32.16 0.00 0.00 -GCC 15 31.64 18.03 17.99 32.34 0.03 0.00 -GCC 16 32.04 17.73 18.49 31.74 0.05 0.00 -GCC 17 32.02 18.40 18.02 31.56 0.06 0.00 -GCC 18 31.63 18.35 18.24 31.78 0.05 0.00 -GCC 19 31.85 18.22 17.94 31.99 0.04 0.00 -GCC 20 32.12 18.23 17.93 31.72 0.07 0.00 -GCC 21 31.18 18.81 18.19 31.82 0.08 0.00 -GCC 22 32.01 18.42 18.27 31.30 0.08 0.00 -GCC 23 31.18 18.35 18.56 31.91 0.09 0.00 -GCC 24 31.38 18.49 18.53 31.60 0.03 0.00 -GCC 25 31.50 18.67 18.32 31.51 0.10 0.00 -GCC 26 31.91 18.42 18.17 31.51 0.10 0.00 -GCC 27 31.81 18.95 18.32 30.92 0.09 0.00 -GCC 28 31.19 18.51 18.96 31.34 0.08 0.00 -GCC 29 30.97 18.35 19.02 31.66 0.08 0.00 -GCC 30 31.43 18.63 18.08 31.85 0.08 0.00 -GCC 31 31.71 18.57 18.62 31.10 0.10 0.00 -GCC 32 30.97 18.49 18.66 31.88 0.10 0.00 -GCC 33 31.35 18.80 18.16 31.69 0.13 0.00 -GCC 34 31.33 18.81 18.36 31.50 0.10 0.00 -GCC 35 31.06 18.45 18.84 31.65 0.10 0.00 -GCC 36 31.38 18.63 18.88 31.10 0.08 0.00 -GCC 37 31.29 18.68 18.52 31.51 0.07 0.00 -GCC 38 31.05 18.63 18.68 31.63 0.04 0.00 -GCC 39 30.99 18.79 18.84 31.38 0.05 0.00 -GCC 40 31.73 17.98 18.61 31.68 0.00 0.00 -GCC 41 31.02 18.70 18.78 31.50 0.00 0.00 -GCC 42 31.40 18.72 18.70 31.17 0.00 0.00 -GCC 43 31.56 18.47 19.10 30.86 0.02 0.00 -GCC 44 30.82 18.22 19.46 31.51 0.00 0.00 -GCC 45 31.24 18.89 18.40 31.47 0.01 0.00 -GCC 46 31.46 19.30 18.58 30.66 0.00 0.00 -GCC 47 31.54 18.24 18.77 31.45 0.00 0.00 -GCC 48 31.80 18.02 18.47 31.72 0.01 0.00 -GCC 49 31.58 18.53 18.27 31.62 0.06 0.00 -GCC 50 31.38 18.37 18.74 31.51 0.04 0.00 -GCC 51 30.59 18.60 18.77 32.04 0.04 0.00 -GCC 52 31.09 18.65 18.81 31.45 0.07 0.00 -GCC 53 31.64 18.61 18.19 31.56 0.08 0.00 -GCC 54 31.01 18.95 18.47 31.57 0.07 0.00 -GCC 55 31.18 18.83 19.04 30.94 0.00 0.00 -GCC 56 32.06 18.78 18.29 30.87 0.00 0.00 -GCC 57 31.92 18.31 18.75 31.02 0.00 0.00 -GCC 58 31.02 18.81 18.38 31.79 0.01 0.00 -GCC 59 31.61 18.11 18.41 31.87 0.00 0.00 -GCC 60 31.44 18.79 18.67 31.10 0.00 0.00 -GCC 61 31.69 18.24 18.63 31.44 0.00 0.00 -GCC 62 31.42 18.27 18.80 31.51 0.00 0.00 -GCC 63 31.65 18.55 18.45 31.35 0.00 0.00 -GCC 64 31.01 18.92 18.45 31.62 0.00 0.00 -GCC 65 31.64 18.14 18.19 32.03 0.00 0.00 -GCC 66 31.36 18.73 18.23 31.68 0.00 0.00 -GCC 67 31.38 18.32 18.30 32.00 0.00 0.00 -GCC 68 31.42 18.17 18.58 31.83 0.00 0.00 -GCC 69 30.92 19.26 18.48 31.34 0.00 0.00 -GCC 70 31.47 18.60 18.31 31.62 0.00 0.00 -GCC 71 31.47 18.52 18.42 31.59 0.00 0.00 -GCC 72 31.45 18.84 18.74 30.96 0.00 0.00 -GCC 73 31.62 18.20 18.52 31.65 0.00 0.00 -GCC 74 31.49 18.05 18.87 31.59 0.00 0.00 -GCC 75 31.45 18.36 18.47 31.72 0.04 0.00 -GCC 76 31.74 18.42 18.44 31.41 0.08 0.00 -GCC 77 31.88 17.98 18.45 31.69 0.07 0.00 -GCC 78 31.27 18.83 18.46 31.44 0.04 0.00 -GCC 79 31.52 18.79 17.95 31.75 0.07 0.00 -GCC 80 31.25 18.62 18.49 31.63 0.07 0.00 -GCC 81 31.68 18.50 18.38 31.44 0.04 0.00 -GCC 82 31.49 18.40 18.47 31.64 0.00 0.00 -GCC 83 31.50 18.67 18.08 31.75 0.00 0.00 -GCC 84 31.56 17.94 18.46 32.03 0.00 0.00 -GCC 85 31.56 18.77 18.20 31.46 0.00 0.00 -GCC 86 31.68 18.16 18.38 31.78 0.00 0.00 -GCC 87 30.95 18.35 19.10 31.60 0.00 0.00 -GCC 88 31.92 18.89 18.31 30.87 0.04 0.00 -GCC 89 31.82 18.47 18.53 31.18 0.03 0.00 -GCC 90 31.64 18.60 18.54 31.22 0.00 0.00 -GCC 91 31.78 18.67 18.18 31.36 0.06 0.00 -GCC 92 32.15 18.27 18.43 31.15 0.10 0.00 -GCC 93 31.25 18.21 18.62 31.91 0.10 0.00 -GCC 94 31.10 18.65 18.63 31.62 0.10 0.00 -GCC 95 31.50 18.24 18.28 31.98 0.11 0.00 -GCC 96 31.38 18.73 18.68 31.21 0.10 0.00 -GCC 97 31.66 18.38 18.11 31.85 0.10 0.00 -GCC 98 31.86 18.24 18.44 31.46 0.10 0.00 -GCC 99 31.63 18.13 18.46 31.77 0.10 0.00 -GCC 100 31.07 18.98 18.52 31.43 0.10 0.00 -GCC 101 31.77 18.59 18.77 30.87 0.10 0.00 -# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -LBC 1 33.85 17.65 18.44 30.06 0.00 0.00 -LBC 2 35.07 16.30 17.58 31.05 0.00 0.00 -LBC 3 32.25 17.26 17.67 32.82 0.00 0.00 -LBC 4 31.53 17.94 18.41 32.12 0.00 0.00 -LBC 5 32.47 17.01 18.72 31.80 0.00 0.00 -LBC 6 31.93 19.23 18.60 30.24 0.04 0.00 -LBC 7 32.05 17.49 19.16 31.30 0.00 0.00 -LBC 8 31.60 18.49 18.32 31.59 0.01 0.00 -LBC 9 31.46 18.40 17.96 32.18 0.01 0.00 -LBC 10 32.14 18.01 18.87 30.98 0.00 0.00 -LBC 11 32.02 17.56 17.86 32.56 0.01 0.00 -LBC 12 32.06 17.61 18.01 32.32 0.04 0.00 -LBC 13 31.86 17.67 18.59 31.88 0.00 0.00 -LBC 14 31.72 17.68 18.44 32.16 0.00 0.00 -LBC 15 31.64 18.03 17.99 32.34 0.03 0.00 -LBC 16 32.04 17.73 18.49 31.74 0.05 0.00 -LBC 17 32.02 18.40 18.02 31.56 0.06 0.00 -LBC 18 31.63 18.35 18.24 31.78 0.05 0.00 -LBC 19 31.85 18.22 17.94 31.99 0.04 0.00 -LBC 20 32.12 18.23 17.93 31.72 0.07 0.00 -LBC 21 31.18 18.81 18.19 31.82 0.08 0.00 -LBC 22 32.01 18.42 18.27 31.30 0.08 0.00 -LBC 23 31.18 18.35 18.56 31.91 0.09 0.00 -LBC 24 31.38 18.49 18.53 31.60 0.03 0.00 -LBC 25 31.50 18.67 18.32 31.51 0.10 0.00 -LBC 26 31.91 18.42 18.17 31.51 0.10 0.00 -LBC 27 31.81 18.95 18.32 30.92 0.09 0.00 -LBC 28 31.19 18.51 18.96 31.34 0.08 0.00 -LBC 29 30.97 18.35 19.02 31.66 0.08 0.00 -LBC 30 31.43 18.63 18.08 31.85 0.08 0.00 -LBC 31 31.71 18.57 18.62 31.10 0.10 0.00 -LBC 32 30.97 18.49 18.66 31.88 0.10 0.00 -LBC 33 31.35 18.80 18.16 31.69 0.13 0.00 -LBC 34 31.33 18.81 18.36 31.50 0.10 0.00 -LBC 35 31.06 18.45 18.84 31.65 0.10 0.00 -LBC 36 31.38 18.63 18.88 31.10 0.08 0.00 -LBC 37 31.29 18.68 18.52 31.51 0.07 0.00 -LBC 38 31.05 18.63 18.68 31.63 0.04 0.00 -LBC 39 30.99 18.79 18.84 31.38 0.05 0.00 -LBC 40 31.73 17.98 18.61 31.68 0.00 0.00 -LBC 41 31.02 18.70 18.78 31.50 0.00 0.00 -LBC 42 31.40 18.72 18.70 31.17 0.00 0.00 -LBC 43 31.56 18.47 19.10 30.86 0.02 0.00 -LBC 44 30.82 18.22 19.46 31.51 0.00 0.00 -LBC 45 31.24 18.89 18.40 31.47 0.01 0.00 -LBC 46 31.46 19.30 18.58 30.66 0.00 0.00 -LBC 47 31.54 18.24 18.77 31.45 0.00 0.00 -LBC 48 31.80 18.02 18.47 31.72 0.01 0.00 -LBC 49 31.58 18.53 18.27 31.62 0.06 0.00 -LBC 50 31.38 18.37 18.74 31.51 0.04 0.00 -LBC 51 30.59 18.60 18.77 32.04 0.04 0.00 -LBC 52 31.09 18.65 18.81 31.45 0.07 0.00 -LBC 53 31.64 18.61 18.19 31.56 0.08 0.00 -LBC 54 31.01 18.95 18.47 31.57 0.07 0.00 -LBC 55 31.18 18.83 19.04 30.94 0.00 0.00 -LBC 56 32.06 18.78 18.29 30.87 0.00 0.00 -LBC 57 31.92 18.31 18.75 31.02 0.00 0.00 -LBC 58 31.02 18.81 18.38 31.79 0.01 0.00 -LBC 59 31.61 18.11 18.41 31.87 0.00 0.00 -LBC 60 31.44 18.79 18.67 31.10 0.00 0.00 -LBC 61 31.69 18.24 18.63 31.44 0.00 0.00 -LBC 62 31.42 18.27 18.80 31.51 0.00 0.00 -LBC 63 31.65 18.55 18.45 31.35 0.00 0.00 -LBC 64 31.01 18.92 18.45 31.62 0.00 0.00 -LBC 65 31.64 18.14 18.19 32.03 0.00 0.00 -LBC 66 31.36 18.73 18.23 31.68 0.00 0.00 -LBC 67 31.38 18.32 18.30 32.00 0.00 0.00 -LBC 68 31.42 18.17 18.58 31.83 0.00 0.00 -LBC 69 30.92 19.26 18.48 31.34 0.00 0.00 -LBC 70 31.47 18.60 18.31 31.62 0.00 0.00 -LBC 71 31.47 18.52 18.42 31.59 0.00 0.00 -LBC 72 31.45 18.84 18.74 30.96 0.00 0.00 -LBC 73 31.62 18.20 18.52 31.65 0.00 0.00 -LBC 74 31.49 18.05 18.87 31.59 0.00 0.00 -LBC 75 31.45 18.36 18.47 31.72 0.04 0.00 -LBC 76 31.74 18.42 18.44 31.41 0.08 0.00 -LBC 77 31.88 17.98 18.45 31.69 0.07 0.00 -LBC 78 31.27 18.83 18.46 31.44 0.04 0.00 -LBC 79 31.52 18.79 17.95 31.75 0.07 0.00 -LBC 80 31.25 18.62 18.49 31.63 0.07 0.00 -LBC 81 31.68 18.50 18.38 31.44 0.04 0.00 -LBC 82 31.49 18.40 18.47 31.64 0.00 0.00 -LBC 83 31.50 18.67 18.08 31.75 0.00 0.00 -LBC 84 31.56 17.94 18.46 32.03 0.00 0.00 -LBC 85 31.56 18.77 18.20 31.46 0.00 0.00 -LBC 86 31.68 18.16 18.38 31.78 0.00 0.00 -LBC 87 30.95 18.35 19.10 31.60 0.00 0.00 -LBC 88 31.92 18.89 18.31 30.87 0.04 0.00 -LBC 89 31.82 18.47 18.53 31.18 0.03 0.00 -LBC 90 31.64 18.60 18.54 31.22 0.00 0.00 -LBC 91 31.78 18.67 18.18 31.36 0.06 0.00 -LBC 92 32.15 18.27 18.43 31.15 0.10 0.00 -LBC 93 31.25 18.21 18.62 31.91 0.10 0.00 -LBC 94 31.10 18.65 18.63 31.62 0.10 0.00 -LBC 95 31.50 18.24 18.28 31.98 0.11 0.00 -LBC 96 31.38 18.73 18.68 31.21 0.10 0.00 -LBC 97 31.66 18.38 18.11 31.85 0.10 0.00 -LBC 98 31.86 18.24 18.44 31.46 0.10 0.00 -LBC 99 31.63 18.13 18.46 31.77 0.10 0.00 -LBC 100 31.07 18.98 18.52 31.43 0.10 0.00 -LBC 101 31.77 18.59 18.77 30.87 0.10 0.00 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%] +GCC 1 33.85 17.65 18.44 30.06 +GCC 2 35.07 16.30 17.59 31.05 +GCC 3 32.25 17.26 17.67 32.82 +GCC 4 31.53 17.94 18.41 32.11 +GCC 5 32.47 17.01 18.72 31.80 +GCC 6 31.91 19.22 18.59 30.27 +GCC 7 32.05 17.49 19.16 31.31 +GCC 8 31.60 18.48 18.32 31.59 +GCC 9 31.45 18.40 17.96 32.19 +GCC 10 32.14 18.01 18.87 30.98 +GCC 11 32.02 17.56 17.86 32.56 +GCC 12 32.05 17.61 18.00 32.35 +GCC 13 31.86 17.67 18.59 31.88 +GCC 14 31.72 17.68 18.44 32.16 +GCC 15 31.63 18.03 17.98 32.36 +GCC 16 32.03 17.72 18.48 31.77 +GCC 17 31.99 18.40 18.01 31.60 +GCC 18 31.61 18.34 18.24 31.81 +GCC 19 31.84 18.21 17.94 32.01 +GCC 20 32.10 18.22 17.92 31.77 +GCC 21 31.16 18.79 18.17 31.88 +GCC 22 31.98 18.41 18.26 31.35 +GCC 23 31.15 18.33 18.55 31.97 +GCC 24 31.37 18.48 18.52 31.62 +GCC 25 31.47 18.65 18.30 31.58 +GCC 26 31.87 18.40 18.15 31.57 +GCC 27 31.79 18.93 18.30 30.99 +GCC 28 31.17 18.50 18.94 31.40 +GCC 29 30.95 18.34 19.01 31.71 +GCC 30 31.41 18.62 18.06 31.91 +GCC 31 31.69 18.55 18.60 31.16 +GCC 32 30.93 18.48 18.64 31.95 +GCC 33 31.31 18.78 18.14 31.77 +GCC 34 31.30 18.80 18.34 31.56 +GCC 35 31.03 18.43 18.82 31.72 +GCC 36 31.36 18.62 18.87 31.15 +GCC 37 31.27 18.66 18.51 31.56 +GCC 38 31.03 18.62 18.68 31.67 +GCC 39 30.97 18.78 18.84 31.41 +GCC 40 31.73 17.98 18.61 31.69 +GCC 41 31.02 18.70 18.78 31.49 +GCC 42 31.40 18.73 18.70 31.17 +GCC 43 31.56 18.47 19.10 30.88 +GCC 44 30.82 18.22 19.46 31.51 +GCC 45 31.24 18.89 18.40 31.48 +GCC 46 31.46 19.30 18.58 30.66 +GCC 47 31.54 18.24 18.77 31.45 +GCC 48 31.79 18.02 18.46 31.73 +GCC 49 31.56 18.52 18.26 31.66 +GCC 50 31.36 18.36 18.74 31.54 +GCC 51 30.58 18.59 18.76 32.07 +GCC 52 31.06 18.64 18.79 31.50 +GCC 53 31.61 18.60 18.17 31.62 +GCC 54 30.99 18.94 18.45 31.62 +GCC 55 31.18 18.83 19.04 30.94 +GCC 56 32.06 18.78 18.29 30.87 +GCC 57 31.92 18.31 18.75 31.02 +GCC 58 31.02 18.81 18.38 31.79 +GCC 59 31.61 18.11 18.41 31.87 +GCC 60 31.44 18.79 18.67 31.10 +GCC 61 31.69 18.24 18.63 31.44 +GCC 62 31.42 18.27 18.80 31.51 +GCC 63 31.65 18.55 18.45 31.35 +GCC 64 31.01 18.92 18.45 31.62 +GCC 65 31.64 18.14 18.19 32.03 +GCC 66 31.36 18.73 18.23 31.68 +GCC 67 31.38 18.32 18.30 32.00 +GCC 68 31.42 18.17 18.58 31.83 +GCC 69 30.92 19.26 18.48 31.34 +GCC 70 31.47 18.60 18.31 31.62 +GCC 71 31.47 18.52 18.42 31.59 +GCC 72 31.45 18.84 18.74 30.96 +GCC 73 31.62 18.20 18.52 31.65 +GCC 74 31.49 18.05 18.87 31.59 +GCC 75 31.44 18.36 18.46 31.75 +GCC 76 31.71 18.40 18.42 31.46 +GCC 77 31.86 17.97 18.43 31.74 +GCC 78 31.26 18.82 18.45 31.47 +GCC 79 31.50 18.77 17.94 31.80 +GCC 80 31.23 18.60 18.48 31.68 +GCC 81 31.67 18.49 18.37 31.47 +GCC 82 31.49 18.40 18.47 31.64 +GCC 83 31.50 18.67 18.08 31.75 +GCC 84 31.56 17.94 18.46 32.03 +GCC 85 31.56 18.77 18.20 31.46 +GCC 86 31.68 18.16 18.38 31.78 +GCC 87 30.95 18.35 19.10 31.60 +GCC 88 31.91 18.88 18.31 30.90 +GCC 89 31.82 18.46 18.53 31.20 +GCC 90 31.64 18.60 18.54 31.22 +GCC 91 31.76 18.66 18.17 31.41 +GCC 92 32.12 18.25 18.42 31.22 +GCC 93 31.22 18.20 18.60 31.98 +GCC 94 31.07 18.63 18.61 31.69 +GCC 95 31.47 18.22 18.26 32.05 +GCC 96 31.35 18.71 18.66 31.28 +GCC 97 31.63 18.36 18.10 31.92 +GCC 98 31.83 18.22 18.42 31.53 +GCC 99 31.60 18.12 18.44 31.84 +GCC 100 31.04 18.96 18.50 31.49 +GCC 101 31.74 18.57 18.75 30.94 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count -RL 101 25000 -# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count -# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +RL 101 25001 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 17 10 ID 2 8 1 @@ -382,17 +474,17 @@ IC 85 0 0 0 1 IC 88 0 3 0 0 IC 92 0 0 0 1 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. -COV [1-1] 1 30808 -COV [2-2] 2 5369 -COV [3-3] 3 1121 -COV [4-4] 4 384 -COV [5-5] 5 65 -COV [6-6] 6 45 +COV [1-1] 1 31856 +COV [2-2] 2 5793 +COV [3-3] 3 1266 +COV [4-4] 4 489 +COV [5-5] 5 160 +COV [6-6] 6 49 COV [7-7] 7 36 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 15.385 0.000 0.000 0.000 0.000 0.000 -GCD 6.6 23.077 0.086 0.086 0.086 0.086 0.086 -GCD 38.0 30.769 0.141 0.141 0.141 0.141 0.141 -GCD 40.0 61.538 0.141 0.141 0.202 0.212 0.288 -GCD 41.0 92.308 0.172 0.172 0.197 0.222 0.258 -GCD 42.0 100.000 0.152 0.152 0.152 0.152 0.152 +GCD 6.6 23.077 0.085 0.085 0.085 0.085 0.085 +GCD 38.0 30.769 0.140 0.140 0.140 0.140 0.140 +GCD 40.0 69.231 0.140 0.140 0.200 0.210 0.285 +GCD 41.0 92.308 0.195 0.195 0.220 0.255 0.255 +GCD 42.0 100.000 0.150 0.150 0.150 0.150 0.150 diff --git a/results/bwa/C.sorted.bam b/results/bwa/C.sorted.bam index a72927b..ed237dd 100644 Binary files a/results/bwa/C.sorted.bam and b/results/bwa/C.sorted.bam differ diff --git a/results/bwa/C.stats.txt b/results/bwa/C.stats.txt index 3327395..efe176b 100644 --- a/results/bwa/C.stats.txt +++ b/results/bwa/C.stats.txt @@ -1,17 +1,16 @@ -# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats -# This file contains statistics for all reads. +# This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats # The command line was: stats C.sorted.bam # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 95d7cf2e 356c45e0 861b8a9a # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. -SN raw total sequences: 25000 +SN raw total sequences: 25001 SN filtered sequences: 0 -SN sequences: 25000 +SN sequences: 25001 SN is sorted: 1 -SN 1st fragments: 25000 +SN 1st fragments: 25001 SN last fragments: 0 -SN reads mapped: 500 +SN reads mapped: 501 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped SN reads unmapped: 24500 SN reads properly paired: 0 # proper-pair bit set @@ -20,21 +19,15 @@ SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 4 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 1 -SN total length: 2525000 # ignores clipping -SN total first fragment length: 2525000 # ignores clipping -SN total last fragment length: 0 # ignores clipping -SN bases mapped: 50500 # ignores clipping -SN bases mapped (cigar): 47348 # more accurate +SN total length: 2525042 # ignores clipping +SN bases mapped: 50542 # ignores clipping +SN bases mapped (cigar): 47390 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 -SN mismatches: 1107 # from NM fields -SN error rate: 2.338008e-02 # mismatches / bases mapped (cigar) -SN average length: 101 -SN average first fragment length: 101 -SN average last fragment length: 0 +SN mismatches: 1109 # from NM fields +SN error rate: 2.340156e-02 # mismatches / bases mapped (cigar) +SN average length: 100 SN maximum length: 101 -SN maximum first fragment length: 0 -SN maximum last fragment length: 0 SN average quality: 31.0 SN insert size average: 0.0 SN insert size standard deviation: 0.0 @@ -42,11 +35,214 @@ SN inward oriented pairs: 0 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 -SN percentage of properly paired reads (%): 0.0 -# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. +# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. -# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. +FFQ 1 0 0 278 0 0 0 0 0 0 0 818 0 0 0 0 0 690 0 0 0 0 0 41 446 1 592 768 690 951 0 2526 8981 0 2808 5411 0 0 0 0 0 0 0 0 +FFQ 2 0 0 278 0 0 0 0 0 0 0 787 0 0 0 0 0 700 0 0 0 0 0 78 385 1 593 732 822 794 0 2119 8398 0 2180 7134 0 0 0 0 0 0 0 0 +FFQ 3 0 0 287 0 0 0 0 0 0 0 942 0 0 0 0 0 791 0 0 0 0 0 148 428 0 519 748 1021 723 0 1991 8332 0 1699 7371 1 0 0 0 0 0 0 0 +FFQ 4 0 0 300 0 0 0 0 0 0 0 702 0 0 0 0 0 212 0 0 521 0 0 86 0 0 377 295 21 686 0 664 12 1157 1554 0 6976 0 11437 1 0 0 0 0 +FFQ 5 0 0 331 0 0 0 0 0 0 0 695 0 0 0 0 0 203 0 0 451 0 0 90 0 0 406 355 18 740 0 704 5 1129 1508 0 6790 0 11576 0 0 0 0 0 +FFQ 6 0 0 363 0 0 0 0 0 122 0 632 331 0 0 1 43 50 412 121 188 0 11 8 186 0 464 413 65 496 242 866 104 1351 1529 0 6013 586 10404 0 0 0 0 0 +FFQ 7 0 0 379 0 0 0 0 0 92 1 555 263 0 0 0 55 40 531 86 140 0 6 11 130 1 407 341 65 601 160 742 113 1269 1440 0 6232 684 10657 0 0 0 0 0 +FFQ 8 0 0 397 0 0 1 2 0 66 0 349 184 0 0 0 43 26 451 53 82 0 9 8 89 1 312 275 78 493 155 651 134 1232 1435 0 6367 737 11371 0 0 0 0 0 +FFQ 9 0 0 415 0 0 0 0 0 86 0 456 212 0 0 0 48 31 392 74 130 0 21 9 118 0 374 92 396 381 188 708 83 1020 836 700 2322 0 3810 1463 10636 0 0 0 +FFQ 10 0 0 434 0 0 1 0 0 80 0 375 188 0 0 0 42 38 356 72 98 2 12 9 108 0 350 102 477 316 138 705 96 1050 788 689 2253 0 3776 1378 11068 0 0 0 +FFQ 11 0 0 459 0 0 0 0 2 85 0 393 175 2 0 1 34 47 383 82 102 0 15 7 103 2 366 108 561 185 199 745 91 1094 787 672 2324 0 3737 1480 10760 0 0 0 +FFQ 12 0 0 480 0 0 0 1 3 69 0 357 170 1 0 0 38 28 393 64 100 1 12 7 104 1 369 79 698 42 154 725 102 1027 735 724 2217 0 3834 1371 11095 0 0 0 +FFQ 13 0 0 500 0 0 1 0 2 72 4 357 206 1 0 0 52 45 344 75 91 0 10 8 120 2 322 89 679 17 175 696 93 1057 780 683 2277 0 3664 1608 10971 0 0 0 +FFQ 14 0 0 517 0 0 0 0 2 80 3 358 153 1 0 0 5 70 343 82 98 0 13 9 31 75 343 80 726 16 187 328 398 811 827 740 416 1428 1193 3056 1968 4204 6440 0 +FFQ 15 0 0 535 0 0 1 1 2 86 6 344 187 0 0 0 3 65 341 91 98 0 13 5 45 92 340 90 692 19 166 354 450 807 803 722 431 1430 1176 3065 1982 4098 6461 0 +FFQ 16 0 0 559 0 0 0 0 1 75 4 428 207 2 0 0 5 73 367 90 123 1 9 10 40 105 342 104 693 26 203 356 404 820 814 788 407 1436 1160 3032 1918 4072 6327 0 +FFQ 17 0 0 577 0 0 1 1 2 127 10 571 319 0 0 0 4 90 362 129 218 2 22 13 45 211 441 113 818 33 267 395 547 880 974 780 466 1576 1212 3146 1671 3956 5022 0 +FFQ 18 0 0 594 0 0 0 1 1 91 12 447 207 1 1 1 12 78 465 73 122 1 8 7 60 96 392 72 799 25 179 407 434 962 844 896 454 1508 1367 3174 1986 3920 5304 0 +FFQ 19 0 0 608 0 0 0 3 3 86 10 377 169 2 0 1 5 55 35 457 122 0 13 8 34 89 350 76 768 20 154 397 409 862 518 1117 437 1259 1272 2451 2635 4370 5829 0 +FFQ 20 0 0 634 0 0 0 2 2 77 27 369 167 1 1 2 9 72 26 387 100 2 7 5 60 102 304 104 696 16 154 361 397 852 517 992 450 1322 1230 2493 2574 4420 6067 0 +FFQ 21 0 0 652 0 0 0 1 1 86 35 362 150 0 1 3 8 60 42 365 106 0 11 8 48 125 308 89 655 34 195 388 429 762 512 1090 484 1264 1171 2478 2650 4327 6101 0 +FFQ 22 0 0 673 0 0 0 1 5 87 28 367 148 0 1 0 18 78 70 361 117 2 26 6 56 178 308 107 661 28 164 424 453 772 555 1038 474 1314 1201 2560 2518 4318 5884 0 +FFQ 23 0 0 704 0 0 0 2 3 105 46 446 152 2 3 2 14 109 85 366 153 0 15 10 62 217 305 113 703 25 186 453 445 826 567 1059 467 1280 1192 2532 2591 3990 5771 0 +FFQ 24 0 0 723 0 0 0 5 3 96 58 350 143 1 3 0 25 103 97 330 121 1 9 4 73 207 330 97 682 32 185 530 428 827 548 1037 465 1160 1303 2500 2581 3803 6141 0 +FFQ 25 0 0 754 0 0 0 3 5 126 72 346 118 0 3 2 19 132 117 283 115 1 17 9 80 200 289 95 636 28 159 504 429 739 553 1028 469 1252 1326 2439 2563 3730 6360 0 +FFQ 26 0 0 781 0 0 1 1 2 130 99 363 104 1 1 2 29 132 126 247 114 0 26 16 87 249 293 104 618 25 160 524 408 709 545 996 501 1241 1264 2551 2491 3850 6210 0 +FFQ 27 0 0 810 0 0 2 2 9 211 184 453 94 0 0 1 35 189 164 257 148 1 30 16 99 330 295 134 671 28 244 596 557 735 609 1108 563 1299 1239 2624 2216 3868 5180 0 +FFQ 28 0 0 830 0 0 0 3 3 135 147 287 48 0 5 2 46 192 184 145 98 2 10 13 77 264 296 89 568 19 148 718 434 703 538 1079 511 1255 1360 2509 2741 3927 5615 0 +FFQ 29 0 0 844 0 0 0 3 4 161 167 282 41 2 2 2 56 179 149 120 111 2 23 10 84 329 285 98 529 22 162 696 423 584 556 1028 636 1152 1318 2625 2410 4055 5851 0 +FFQ 30 0 0 866 0 0 1 2 6 132 180 208 23 1 1 5 62 177 154 85 100 5 30 11 92 298 269 85 464 26 174 708 396 547 598 1019 642 1169 1281 2652 2358 4172 6002 0 +FFQ 31 0 0 895 0 0 1 5 9 143 226 202 12 1 7 6 68 213 130 77 129 1 38 14 115 335 287 115 419 33 189 741 458 486 610 1046 669 1278 1190 2793 2162 4199 5699 0 +FFQ 32 0 0 924 0 0 0 7 17 153 261 187 8 5 4 7 77 192 104 86 106 5 37 13 105 394 308 109 454 27 193 835 470 441 687 976 708 1188 1195 2860 2136 4203 5519 0 +FFQ 33 0 0 964 0 0 1 8 17 180 283 129 1 3 6 6 101 237 89 91 135 7 40 14 116 351 346 114 459 43 226 899 478 372 684 978 830 1221 1284 2810 2090 4117 5271 0 +FFQ 34 0 0 1005 0 0 0 9 16 178 335 108 1 8 8 9 121 236 62 86 138 2 47 23 111 379 362 102 347 66 174 887 501 340 693 985 811 1123 1275 3034 2104 4093 5222 0 +FFQ 35 0 0 1040 0 0 1 10 17 196 349 70 0 6 11 8 130 233 54 85 116 5 47 14 104 379 379 117 351 48 202 1001 497 313 669 895 931 1127 1267 2969 2043 4276 5041 0 +FFQ 36 0 0 1084 0 0 0 10 20 164 363 41 2 4 9 13 148 218 37 63 99 6 50 24 106 368 410 96 273 56 153 971 449 296 731 928 914 1052 1330 3004 2070 4252 5187 0 +FFQ 37 0 0 1135 0 0 0 7 20 197 446 22 2 10 5 10 173 232 18 85 137 6 59 25 124 420 393 130 310 57 221 957 488 311 796 848 1002 998 1225 3070 1897 4228 4937 0 +FFQ 38 0 0 1166 0 0 0 9 22 159 355 6 1 5 11 13 192 202 23 74 110 7 56 30 111 383 403 115 270 77 173 1056 469 231 851 838 1012 934 1305 3070 1945 4268 5049 0 +FFQ 39 0 0 1208 0 0 0 9 24 161 368 7 0 5 8 26 163 168 14 77 122 9 64 30 107 431 346 136 286 77 175 1008 479 282 865 792 1051 875 1357 2980 1966 4302 5023 0 +FFQ 40 0 0 1275 0 0 1 13 30 181 383 7 3 9 20 29 202 154 14 84 118 10 68 29 116 390 323 150 285 75 192 1000 496 289 938 747 1089 860 1337 3020 1995 4268 4801 0 +FFQ 41 0 0 1335 0 0 0 15 25 154 362 3 2 9 14 23 214 135 14 70 139 13 59 47 122 398 307 133 321 103 220 986 508 251 945 753 1160 884 1365 3056 2025 4171 4660 0 +FFQ 42 0 0 1403 0 0 1 5 34 169 376 1 3 13 22 25 228 135 9 71 141 9 70 50 139 417 304 136 317 119 229 966 557 283 970 693 1144 880 1269 3053 2008 4166 4586 0 +FFQ 43 0 0 1485 0 0 2 21 67 214 439 2 4 13 23 35 238 99 20 110 176 14 83 61 178 445 253 168 338 123 260 953 574 314 1083 813 1228 820 1333 3035 1779 4049 4148 0 +FFQ 44 0 0 1557 0 0 3 33 114 301 624 5 6 19 41 60 286 105 27 115 200 19 100 62 187 557 263 183 429 167 316 1060 595 330 1115 764 1169 937 1313 2981 1780 3679 3498 0 +FFQ 45 0 0 1600 0 0 2 16 58 191 342 1 8 27 41 67 315 79 25 81 127 23 63 99 201 498 256 195 288 211 193 1124 542 299 1222 715 1194 764 1516 2999 1996 3954 3668 0 +FFQ 46 0 0 1667 0 0 2 30 69 135 343 2 6 15 44 60 251 58 15 68 134 16 50 92 193 458 221 196 281 192 197 998 549 320 1213 742 1279 812 1486 3077 2001 3884 3844 0 +FFQ 47 0 0 1746 0 0 0 34 99 217 414 2 3 29 54 76 237 51 24 102 168 24 84 83 245 484 186 228 361 212 262 891 576 346 1187 718 1165 884 1407 3082 1849 3842 3628 0 +FFQ 48 0 0 1827 0 0 1 26 78 211 338 3 4 24 73 68 243 36 25 87 174 32 71 99 255 480 146 207 317 274 237 929 600 398 1189 734 1187 931 1457 2998 1914 3789 3538 0 +FFQ 49 0 0 1918 0 0 0 38 84 203 322 1 2 24 60 67 215 33 21 89 132 43 85 115 246 467 136 244 302 299 257 940 677 352 1141 774 1088 977 1497 2700 2236 3749 3466 0 +FFQ 50 0 0 2004 0 0 4 36 93 172 314 2 7 22 55 73 223 16 30 76 137 47 74 111 253 423 113 235 302 337 247 830 629 386 1131 791 1069 974 1602 2611 2236 3811 3524 0 +FFQ 51 0 0 2085 0 0 1 59 136 279 388 6 11 41 114 122 284 26 46 111 169 76 90 193 424 680 164 345 381 597 303 1299 803 458 1842 987 1366 1001 2291 2726 2420 1998 678 0 +FFQ 52 0 0 2145 0 0 2 37 130 238 287 6 9 47 128 116 236 18 28 84 129 65 89 192 400 485 96 319 283 546 248 1075 787 419 1496 980 1348 1021 2142 2891 3086 2597 795 0 +FFQ 53 0 0 2195 0 0 0 47 86 198 231 1 14 48 138 110 131 18 27 87 121 54 66 175 353 386 73 347 274 491 261 824 760 438 1241 936 1141 1051 1693 2896 2888 3514 1686 0 +FFQ 54 0 0 2266 0 0 1 37 85 169 178 1 6 40 102 92 116 12 27 83 137 56 57 162 290 314 62 352 231 494 243 680 719 419 1115 945 1095 1086 1619 2740 2530 3726 2713 0 +FFQ 55 0 0 2340 0 0 1 63 121 260 225 3 9 41 103 107 102 28 36 110 177 52 79 191 326 249 178 376 296 497 295 574 777 479 1032 1079 976 1167 1435 2846 2183 3477 2710 0 +FFQ 56 0 0 2440 0 0 3 65 152 335 202 6 11 50 121 113 90 21 31 103 177 66 84 206 351 248 149 413 269 565 353 580 807 497 967 1079 1051 1194 1405 2596 2149 3321 2730 0 +FFQ 57 0 0 2498 0 0 2 91 202 500 264 4 12 64 195 121 88 22 41 153 209 101 95 278 415 232 180 469 298 627 359 539 815 577 965 1095 973 1119 1373 2458 1979 3015 2572 0 +FFQ 58 0 0 2548 0 0 3 40 127 262 157 3 16 64 220 114 83 16 31 108 120 112 94 268 410 198 128 440 230 774 262 537 847 478 976 1142 973 1187 1494 2418 2306 3051 2763 0 +FFQ 59 0 0 2602 0 0 2 48 101 230 86 4 13 50 194 84 55 11 23 92 100 92 81 234 354 158 122 434 164 703 311 472 859 492 909 1211 1019 1248 1543 2416 2304 3088 3091 0 +FFQ 60 0 0 2666 0 0 3 73 158 409 117 3 16 59 166 84 39 18 35 140 161 91 102 280 368 134 146 502 218 634 347 422 884 588 790 1309 1040 1295 1384 2264 2125 2935 2995 0 +FFQ 61 0 0 2735 0 0 2 47 116 257 61 6 23 44 203 93 43 14 18 116 122 93 93 306 319 135 98 476 162 768 350 383 834 561 803 1294 1075 1316 1528 2255 2322 2841 3088 0 +FFQ 62 0 0 2784 0 0 3 118 313 735 126 5 23 60 253 103 31 47 42 213 236 109 118 355 316 156 249 602 291 702 525 376 1010 672 800 1342 1027 1373 1222 2187 1758 2556 2162 0 +FFQ 63 0 0 2826 0 0 3 76 206 476 75 10 40 58 332 116 42 7 38 157 133 158 134 429 365 124 145 645 162 871 420 447 1025 601 814 1460 1112 1422 1353 1948 2132 2427 2211 0 +FFQ 64 0 0 2855 0 0 1 42 130 297 35 8 32 61 240 72 28 13 23 110 92 155 100 373 295 128 132 632 129 892 406 433 938 650 826 1552 1185 1596 1509 1924 2331 2481 2294 0 +FFQ 65 0 0 2892 0 0 4 49 106 251 33 11 26 48 204 48 13 16 32 97 76 131 86 291 240 80 140 566 130 743 430 488 950 717 764 1609 1342 1660 1537 1933 2469 2492 2296 0 +FFQ 66 0 0 2938 0 0 3 40 156 311 19 11 26 35 173 54 6 13 28 134 112 104 100 355 218 85 145 631 136 654 493 433 976 682 720 1624 1444 1781 1492 1839 2344 2401 2284 0 +FFQ 67 0 0 2989 0 0 3 30 131 260 15 5 26 47 176 38 13 20 23 111 114 139 109 328 211 68 166 615 106 720 494 477 929 738 703 1703 1601 1757 1518 1763 2464 2166 2224 0 +FFQ 68 0 0 3040 0 0 2 35 96 195 11 5 34 26 128 33 6 17 19 116 107 117 89 330 155 65 141 667 138 650 511 477 954 740 704 1743 1676 1955 1655 1692 2424 2110 2137 0 +FFQ 69 0 0 3099 0 0 0 34 125 209 6 1 23 24 145 25 10 14 23 161 75 127 105 329 142 52 129 651 123 604 541 494 1010 797 771 1802 1810 1887 1767 1654 2341 1999 1891 0 +FFQ 70 0 0 3154 0 0 2 33 130 194 5 10 32 29 138 33 4 14 25 144 89 131 112 320 129 100 158 665 113 598 547 504 951 811 716 1914 2100 1935 1787 1443 2357 1817 1756 0 +FFQ 71 0 0 3223 0 0 4 29 135 180 8 6 28 24 129 26 7 18 21 146 64 134 117 291 120 105 194 696 126 536 593 563 981 792 757 1998 2169 2061 1819 1401 2278 1682 1539 0 +FFQ 72 0 0 3290 0 0 5 40 141 191 4 9 27 24 131 41 9 25 27 175 97 169 131 300 114 106 176 733 125 527 673 570 1010 885 748 2055 2234 2045 1815 1276 2176 1504 1392 0 +FFQ 73 0 0 3386 0 0 8 41 189 224 4 10 40 37 131 24 9 22 32 190 75 165 133 312 111 119 207 783 130 498 710 583 996 878 864 2184 2377 2084 1728 1171 2034 1313 1198 0 +FFQ 74 0 0 3474 0 0 4 53 248 219 3 12 38 31 149 31 15 18 35 206 83 199 127 291 113 121 225 797 158 478 753 592 1113 884 852 2160 2427 2149 1737 1069 1979 1153 1004 0 +FFQ 75 0 0 3563 0 0 7 55 249 239 5 15 61 38 158 33 11 23 37 237 68 204 171 298 111 144 233 907 150 479 830 643 1041 917 842 2364 2507 2123 1661 947 1784 970 875 0 +FFQ 76 0 0 3647 0 0 13 113 589 462 5 36 87 48 204 39 17 29 77 390 134 289 171 381 140 174 370 1029 198 481 976 666 1195 969 907 2351 2264 1848 1355 773 1269 762 542 0 +FFQ 77 0 0 3704 0 0 9 61 358 241 1 27 119 56 235 36 18 18 41 251 92 350 199 385 137 186 312 1083 157 538 922 735 1181 1029 874 2533 2457 1907 1417 671 1486 659 515 0 +FFQ 78 0 0 3768 0 0 8 41 234 160 0 36 94 43 188 19 21 25 52 220 80 319 179 312 126 165 304 1011 163 460 994 789 1156 1046 977 2692 2728 1984 1469 605 1421 620 491 0 +FFQ 79 0 0 3833 0 0 8 45 239 152 1 27 68 40 135 28 15 19 42 263 79 284 160 245 121 155 306 934 203 423 975 759 1191 1069 998 2819 2997 2017 1542 543 1239 566 460 0 +FFQ 80 0 0 3881 0 0 8 23 171 101 0 11 62 31 115 24 5 12 37 220 59 287 125 214 138 139 296 858 187 364 1006 696 1169 1100 972 2993 3319 2076 1643 518 1191 509 440 0 +FFQ 81 0 0 3961 0 0 5 32 217 100 0 24 37 27 75 20 25 17 40 211 55 259 107 170 116 128 298 852 211 300 979 699 1177 1134 1007 3069 3613 2069 1596 439 1062 441 428 0 +FFQ 82 0 0 4036 0 0 17 49 378 132 0 31 74 46 72 34 25 23 52 325 73 279 155 184 119 160 391 908 229 291 1075 684 1210 1093 1057 3190 3461 1864 1351 404 856 378 294 0 +FFQ 83 0 0 4101 0 0 16 41 358 115 1 21 70 46 97 21 20 18 70 273 81 338 139 165 150 182 446 957 208 284 1067 688 1299 1147 1060 3257 3486 1839 1215 332 764 355 273 0 +FFQ 84 0 0 4189 0 0 12 20 268 74 0 40 65 43 79 20 25 9 46 223 69 326 132 139 150 176 392 910 219 270 1093 696 1290 1129 1037 3435 3904 1794 1152 283 714 321 256 0 +FFQ 85 0 0 4267 0 0 13 21 254 59 0 23 50 33 69 14 30 15 59 204 57 256 114 106 135 173 410 767 208 226 1108 711 1314 1209 1029 3591 4117 1829 1131 265 613 269 251 0 +FFQ 86 0 0 4367 0 0 11 27 308 62 0 28 63 35 51 17 27 32 45 227 83 323 112 104 145 213 471 754 273 217 1103 680 1314 1205 1047 3609 4142 1728 1011 217 517 249 183 0 +FFQ 87 0 0 4480 0 0 16 21 304 48 0 36 74 34 41 22 25 24 63 253 71 395 107 97 157 203 469 747 246 209 1128 636 1397 1193 1045 3692 4185 1650 899 230 422 223 158 0 +FFQ 88 0 0 4593 0 0 18 28 314 41 0 34 71 32 43 15 25 22 40 239 104 362 92 91 154 195 502 732 279 198 1115 670 1387 1242 1069 3737 4277 1505 796 186 425 210 157 0 +FFQ 89 0 0 4701 0 0 23 22 331 46 0 43 74 44 36 17 38 21 63 272 109 364 80 80 158 194 569 715 279 157 1180 646 1322 1196 1115 3679 4404 1443 720 171 370 164 154 0 +FFQ 90 0 0 4819 0 0 18 20 265 28 0 44 74 41 34 18 25 16 59 222 120 375 71 51 170 218 555 644 314 175 1174 635 1381 1279 1066 3885 4390 1383 643 153 320 158 157 0 +FFQ 91 0 0 4976 0 0 20 23 295 33 0 42 68 38 15 15 37 14 72 285 110 351 71 58 185 214 554 601 317 159 1129 621 1440 1262 1025 3813 4572 1343 549 124 296 139 134 0 +FFQ 92 0 0 5115 0 0 23 22 344 24 0 60 74 36 20 14 38 28 64 294 118 349 57 41 199 234 610 590 349 138 1144 664 1412 1239 1040 3807 4502 1248 519 104 256 124 100 0 +FFQ 93 0 0 5260 0 0 23 20 270 34 0 61 64 32 17 10 41 24 79 240 140 357 50 46 178 177 676 467 325 136 1212 660 1345 1271 1123 3797 4654 1183 468 112 227 126 95 0 +FFQ 94 0 0 5439 0 0 17 14 234 22 0 38 46 25 11 13 29 14 64 212 139 333 47 35 173 206 603 395 348 125 1131 664 1412 1307 1014 4011 4800 1139 417 81 240 107 95 0 +FFQ 95 0 0 5668 0 0 13 9 184 16 0 33 29 19 23 10 38 15 46 253 135 279 31 35 157 214 632 382 391 117 1126 592 1419 1296 1070 3942 4924 1058 371 77 221 90 85 0 +FFQ 96 0 0 5930 0 0 17 8 160 12 0 24 24 10 19 4 28 13 60 194 144 280 24 29 162 194 604 344 405 87 1100 678 1392 1290 1099 4022 4853 1031 339 63 226 67 64 0 +FFQ 97 0 0 6297 0 0 16 5 154 6 0 28 33 7 20 2 33 17 55 228 126 253 18 22 195 211 706 333 378 98 1207 661 1447 1328 1009 3955 4530 949 318 44 210 51 50 0 +FFQ 98 0 0 6632 0 0 8 1 109 9 0 25 15 5 13 2 26 19 56 214 135 225 20 21 159 211 673 293 413 73 1204 667 1497 1297 1009 4027 4430 900 310 52 171 46 33 0 +FFQ 99 0 0 7043 0 0 1 0 32 3 0 15 4 1 0 1 27 12 40 205 131 193 16 28 158 212 689 270 371 62 1168 602 1422 1358 1051 4017 4487 842 281 40 171 26 21 0 +FFQ 100 0 0 7465 0 0 0 0 0 0 0 0 0 0 0 0 17 12 40 169 112 177 9 19 111 169 616 205 353 51 1131 625 1496 1379 1087 4095 4381 766 277 48 162 14 14 0 +FFQ 101 0 0 8027 0 0 0 0 0 0 0 0 0 0 0 0 67 46 85 547 254 323 18 50 241 344 1172 346 565 88 1734 736 1795 1570 909 3625 1908 329 121 15 82 2 1 0 +FFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. +LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 0.25 10 GCF 1.01 50 @@ -68,9 +264,10 @@ GCF 16.08 73 GCF 17.09 59 GCF 18.59 72 GCF 20.10 66 -GCF 21.11 85 -GCF 22.11 105 -GCF 23.12 132 +GCF 20.85 85 +GCF 21.36 86 +GCF 22.11 106 +GCF 23.12 133 GCF 24.12 146 GCF 25.13 176 GCF 26.13 225 @@ -130,216 +327,111 @@ GCF 85.43 1 GCF 88.94 0 GCF 92.46 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. -# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -GCC 1 33.85 17.65 18.44 30.06 0.00 0.00 -GCC 2 35.07 16.30 17.58 31.05 0.00 0.00 -GCC 3 32.25 17.26 17.67 32.82 0.00 0.00 -GCC 4 31.53 17.94 18.41 32.12 0.00 0.00 -GCC 5 32.47 17.01 18.72 31.80 0.00 0.00 -GCC 6 31.93 19.23 18.60 30.24 0.04 0.00 -GCC 7 32.05 17.49 19.16 31.30 0.00 0.00 -GCC 8 31.60 18.49 18.32 31.59 0.01 0.00 -GCC 9 31.46 18.40 17.96 32.18 0.01 0.00 -GCC 10 32.14 18.01 18.87 30.98 0.00 0.00 -GCC 11 32.02 17.56 17.86 32.56 0.01 0.00 -GCC 12 32.06 17.61 18.01 32.32 0.04 0.00 -GCC 13 31.86 17.67 18.59 31.88 0.00 0.00 -GCC 14 31.72 17.68 18.44 32.16 0.00 0.00 -GCC 15 31.64 18.03 17.99 32.34 0.03 0.00 -GCC 16 32.04 17.73 18.49 31.74 0.05 0.00 -GCC 17 32.02 18.40 18.02 31.56 0.06 0.00 -GCC 18 31.63 18.35 18.24 31.78 0.05 0.00 -GCC 19 31.85 18.22 17.94 31.99 0.04 0.00 -GCC 20 32.12 18.23 17.93 31.72 0.07 0.00 -GCC 21 31.18 18.81 18.19 31.82 0.08 0.00 -GCC 22 32.01 18.42 18.27 31.30 0.08 0.00 -GCC 23 31.18 18.35 18.56 31.91 0.09 0.00 -GCC 24 31.38 18.49 18.53 31.60 0.03 0.00 -GCC 25 31.50 18.67 18.32 31.51 0.10 0.00 -GCC 26 31.91 18.42 18.17 31.51 0.10 0.00 -GCC 27 31.81 18.95 18.32 30.92 0.09 0.00 -GCC 28 31.19 18.51 18.96 31.34 0.08 0.00 -GCC 29 30.97 18.35 19.02 31.66 0.08 0.00 -GCC 30 31.43 18.63 18.08 31.85 0.08 0.00 -GCC 31 31.71 18.57 18.62 31.10 0.10 0.00 -GCC 32 30.97 18.49 18.66 31.88 0.10 0.00 -GCC 33 31.35 18.80 18.16 31.69 0.13 0.00 -GCC 34 31.33 18.81 18.36 31.50 0.10 0.00 -GCC 35 31.06 18.45 18.84 31.65 0.10 0.00 -GCC 36 31.38 18.63 18.88 31.10 0.08 0.00 -GCC 37 31.29 18.68 18.52 31.51 0.07 0.00 -GCC 38 31.05 18.63 18.68 31.63 0.04 0.00 -GCC 39 30.99 18.79 18.84 31.38 0.05 0.00 -GCC 40 31.73 17.98 18.61 31.68 0.00 0.00 -GCC 41 31.02 18.70 18.78 31.50 0.00 0.00 -GCC 42 31.40 18.72 18.70 31.17 0.00 0.00 -GCC 43 31.56 18.47 19.10 30.86 0.02 0.00 -GCC 44 30.82 18.22 19.46 31.51 0.00 0.00 -GCC 45 31.24 18.89 18.40 31.47 0.01 0.00 -GCC 46 31.46 19.30 18.58 30.66 0.00 0.00 -GCC 47 31.54 18.24 18.77 31.45 0.00 0.00 -GCC 48 31.80 18.02 18.47 31.72 0.01 0.00 -GCC 49 31.58 18.53 18.27 31.62 0.06 0.00 -GCC 50 31.38 18.37 18.74 31.51 0.04 0.00 -GCC 51 30.59 18.60 18.77 32.04 0.04 0.00 -GCC 52 31.09 18.65 18.81 31.45 0.07 0.00 -GCC 53 31.64 18.61 18.19 31.56 0.08 0.00 -GCC 54 31.01 18.95 18.47 31.57 0.07 0.00 -GCC 55 31.18 18.83 19.04 30.94 0.00 0.00 -GCC 56 32.06 18.78 18.29 30.87 0.00 0.00 -GCC 57 31.92 18.31 18.75 31.02 0.00 0.00 -GCC 58 31.02 18.81 18.38 31.79 0.01 0.00 -GCC 59 31.61 18.11 18.41 31.87 0.00 0.00 -GCC 60 31.44 18.79 18.67 31.10 0.00 0.00 -GCC 61 31.69 18.24 18.63 31.44 0.00 0.00 -GCC 62 31.42 18.27 18.80 31.51 0.00 0.00 -GCC 63 31.65 18.55 18.45 31.35 0.00 0.00 -GCC 64 31.01 18.92 18.45 31.62 0.00 0.00 -GCC 65 31.64 18.14 18.19 32.03 0.00 0.00 -GCC 66 31.36 18.73 18.23 31.68 0.00 0.00 -GCC 67 31.38 18.32 18.30 32.00 0.00 0.00 -GCC 68 31.42 18.17 18.58 31.83 0.00 0.00 -GCC 69 30.92 19.26 18.48 31.34 0.00 0.00 -GCC 70 31.47 18.60 18.31 31.62 0.00 0.00 -GCC 71 31.47 18.52 18.42 31.59 0.00 0.00 -GCC 72 31.45 18.84 18.74 30.96 0.00 0.00 -GCC 73 31.62 18.20 18.52 31.65 0.00 0.00 -GCC 74 31.49 18.05 18.87 31.59 0.00 0.00 -GCC 75 31.45 18.36 18.47 31.72 0.04 0.00 -GCC 76 31.74 18.42 18.44 31.41 0.08 0.00 -GCC 77 31.88 17.98 18.45 31.69 0.07 0.00 -GCC 78 31.27 18.83 18.46 31.44 0.04 0.00 -GCC 79 31.52 18.79 17.95 31.75 0.07 0.00 -GCC 80 31.25 18.62 18.49 31.63 0.07 0.00 -GCC 81 31.68 18.50 18.38 31.44 0.04 0.00 -GCC 82 31.49 18.40 18.47 31.64 0.00 0.00 -GCC 83 31.50 18.67 18.08 31.75 0.00 0.00 -GCC 84 31.56 17.94 18.46 32.03 0.00 0.00 -GCC 85 31.56 18.77 18.20 31.46 0.00 0.00 -GCC 86 31.68 18.16 18.38 31.78 0.00 0.00 -GCC 87 30.95 18.35 19.10 31.60 0.00 0.00 -GCC 88 31.92 18.89 18.31 30.87 0.04 0.00 -GCC 89 31.82 18.47 18.53 31.18 0.03 0.00 -GCC 90 31.64 18.60 18.54 31.22 0.00 0.00 -GCC 91 31.78 18.67 18.18 31.36 0.06 0.00 -GCC 92 32.15 18.27 18.43 31.15 0.10 0.00 -GCC 93 31.25 18.21 18.62 31.91 0.10 0.00 -GCC 94 31.10 18.65 18.63 31.62 0.10 0.00 -GCC 95 31.50 18.24 18.28 31.98 0.11 0.00 -GCC 96 31.38 18.73 18.68 31.21 0.10 0.00 -GCC 97 31.66 18.38 18.11 31.85 0.10 0.00 -GCC 98 31.86 18.24 18.44 31.46 0.10 0.00 -GCC 99 31.63 18.13 18.46 31.77 0.10 0.00 -GCC 100 31.07 18.98 18.52 31.43 0.10 0.00 -GCC 101 31.77 18.59 18.77 30.87 0.10 0.00 -# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] -LBC 1 33.85 17.65 18.44 30.06 0.00 0.00 -LBC 2 35.07 16.30 17.58 31.05 0.00 0.00 -LBC 3 32.25 17.26 17.67 32.82 0.00 0.00 -LBC 4 31.53 17.94 18.41 32.12 0.00 0.00 -LBC 5 32.47 17.01 18.72 31.80 0.00 0.00 -LBC 6 31.93 19.23 18.60 30.24 0.04 0.00 -LBC 7 32.05 17.49 19.16 31.30 0.00 0.00 -LBC 8 31.60 18.49 18.32 31.59 0.01 0.00 -LBC 9 31.46 18.40 17.96 32.18 0.01 0.00 -LBC 10 32.14 18.01 18.87 30.98 0.00 0.00 -LBC 11 32.02 17.56 17.86 32.56 0.01 0.00 -LBC 12 32.06 17.61 18.01 32.32 0.04 0.00 -LBC 13 31.86 17.67 18.59 31.88 0.00 0.00 -LBC 14 31.72 17.68 18.44 32.16 0.00 0.00 -LBC 15 31.64 18.03 17.99 32.34 0.03 0.00 -LBC 16 32.04 17.73 18.49 31.74 0.05 0.00 -LBC 17 32.02 18.40 18.02 31.56 0.06 0.00 -LBC 18 31.63 18.35 18.24 31.78 0.05 0.00 -LBC 19 31.85 18.22 17.94 31.99 0.04 0.00 -LBC 20 32.12 18.23 17.93 31.72 0.07 0.00 -LBC 21 31.18 18.81 18.19 31.82 0.08 0.00 -LBC 22 32.01 18.42 18.27 31.30 0.08 0.00 -LBC 23 31.18 18.35 18.56 31.91 0.09 0.00 -LBC 24 31.38 18.49 18.53 31.60 0.03 0.00 -LBC 25 31.50 18.67 18.32 31.51 0.10 0.00 -LBC 26 31.91 18.42 18.17 31.51 0.10 0.00 -LBC 27 31.81 18.95 18.32 30.92 0.09 0.00 -LBC 28 31.19 18.51 18.96 31.34 0.08 0.00 -LBC 29 30.97 18.35 19.02 31.66 0.08 0.00 -LBC 30 31.43 18.63 18.08 31.85 0.08 0.00 -LBC 31 31.71 18.57 18.62 31.10 0.10 0.00 -LBC 32 30.97 18.49 18.66 31.88 0.10 0.00 -LBC 33 31.35 18.80 18.16 31.69 0.13 0.00 -LBC 34 31.33 18.81 18.36 31.50 0.10 0.00 -LBC 35 31.06 18.45 18.84 31.65 0.10 0.00 -LBC 36 31.38 18.63 18.88 31.10 0.08 0.00 -LBC 37 31.29 18.68 18.52 31.51 0.07 0.00 -LBC 38 31.05 18.63 18.68 31.63 0.04 0.00 -LBC 39 30.99 18.79 18.84 31.38 0.05 0.00 -LBC 40 31.73 17.98 18.61 31.68 0.00 0.00 -LBC 41 31.02 18.70 18.78 31.50 0.00 0.00 -LBC 42 31.40 18.72 18.70 31.17 0.00 0.00 -LBC 43 31.56 18.47 19.10 30.86 0.02 0.00 -LBC 44 30.82 18.22 19.46 31.51 0.00 0.00 -LBC 45 31.24 18.89 18.40 31.47 0.01 0.00 -LBC 46 31.46 19.30 18.58 30.66 0.00 0.00 -LBC 47 31.54 18.24 18.77 31.45 0.00 0.00 -LBC 48 31.80 18.02 18.47 31.72 0.01 0.00 -LBC 49 31.58 18.53 18.27 31.62 0.06 0.00 -LBC 50 31.38 18.37 18.74 31.51 0.04 0.00 -LBC 51 30.59 18.60 18.77 32.04 0.04 0.00 -LBC 52 31.09 18.65 18.81 31.45 0.07 0.00 -LBC 53 31.64 18.61 18.19 31.56 0.08 0.00 -LBC 54 31.01 18.95 18.47 31.57 0.07 0.00 -LBC 55 31.18 18.83 19.04 30.94 0.00 0.00 -LBC 56 32.06 18.78 18.29 30.87 0.00 0.00 -LBC 57 31.92 18.31 18.75 31.02 0.00 0.00 -LBC 58 31.02 18.81 18.38 31.79 0.01 0.00 -LBC 59 31.61 18.11 18.41 31.87 0.00 0.00 -LBC 60 31.44 18.79 18.67 31.10 0.00 0.00 -LBC 61 31.69 18.24 18.63 31.44 0.00 0.00 -LBC 62 31.42 18.27 18.80 31.51 0.00 0.00 -LBC 63 31.65 18.55 18.45 31.35 0.00 0.00 -LBC 64 31.01 18.92 18.45 31.62 0.00 0.00 -LBC 65 31.64 18.14 18.19 32.03 0.00 0.00 -LBC 66 31.36 18.73 18.23 31.68 0.00 0.00 -LBC 67 31.38 18.32 18.30 32.00 0.00 0.00 -LBC 68 31.42 18.17 18.58 31.83 0.00 0.00 -LBC 69 30.92 19.26 18.48 31.34 0.00 0.00 -LBC 70 31.47 18.60 18.31 31.62 0.00 0.00 -LBC 71 31.47 18.52 18.42 31.59 0.00 0.00 -LBC 72 31.45 18.84 18.74 30.96 0.00 0.00 -LBC 73 31.62 18.20 18.52 31.65 0.00 0.00 -LBC 74 31.49 18.05 18.87 31.59 0.00 0.00 -LBC 75 31.45 18.36 18.47 31.72 0.04 0.00 -LBC 76 31.74 18.42 18.44 31.41 0.08 0.00 -LBC 77 31.88 17.98 18.45 31.69 0.07 0.00 -LBC 78 31.27 18.83 18.46 31.44 0.04 0.00 -LBC 79 31.52 18.79 17.95 31.75 0.07 0.00 -LBC 80 31.25 18.62 18.49 31.63 0.07 0.00 -LBC 81 31.68 18.50 18.38 31.44 0.04 0.00 -LBC 82 31.49 18.40 18.47 31.64 0.00 0.00 -LBC 83 31.50 18.67 18.08 31.75 0.00 0.00 -LBC 84 31.56 17.94 18.46 32.03 0.00 0.00 -LBC 85 31.56 18.77 18.20 31.46 0.00 0.00 -LBC 86 31.68 18.16 18.38 31.78 0.00 0.00 -LBC 87 30.95 18.35 19.10 31.60 0.00 0.00 -LBC 88 31.92 18.89 18.31 30.87 0.04 0.00 -LBC 89 31.82 18.47 18.53 31.18 0.03 0.00 -LBC 90 31.64 18.60 18.54 31.22 0.00 0.00 -LBC 91 31.78 18.67 18.18 31.36 0.06 0.00 -LBC 92 32.15 18.27 18.43 31.15 0.10 0.00 -LBC 93 31.25 18.21 18.62 31.91 0.10 0.00 -LBC 94 31.10 18.65 18.63 31.62 0.10 0.00 -LBC 95 31.50 18.24 18.28 31.98 0.11 0.00 -LBC 96 31.38 18.73 18.68 31.21 0.10 0.00 -LBC 97 31.66 18.38 18.11 31.85 0.10 0.00 -LBC 98 31.86 18.24 18.44 31.46 0.10 0.00 -LBC 99 31.63 18.13 18.46 31.77 0.10 0.00 -LBC 100 31.07 18.98 18.52 31.43 0.10 0.00 -LBC 101 31.77 18.59 18.77 30.87 0.10 0.00 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%] +GCC 1 33.85 17.65 18.44 30.06 +GCC 2 35.07 16.30 17.59 31.05 +GCC 3 32.25 17.26 17.67 32.82 +GCC 4 31.53 17.94 18.41 32.11 +GCC 5 32.47 17.01 18.72 31.80 +GCC 6 31.91 19.22 18.59 30.27 +GCC 7 32.05 17.49 19.16 31.31 +GCC 8 31.60 18.48 18.32 31.59 +GCC 9 31.45 18.40 17.96 32.19 +GCC 10 32.14 18.01 18.87 30.98 +GCC 11 32.02 17.56 17.86 32.56 +GCC 12 32.05 17.61 18.00 32.35 +GCC 13 31.86 17.67 18.59 31.88 +GCC 14 31.72 17.68 18.44 32.16 +GCC 15 31.63 18.03 17.98 32.36 +GCC 16 32.03 17.72 18.48 31.77 +GCC 17 31.99 18.40 18.01 31.60 +GCC 18 31.61 18.34 18.24 31.81 +GCC 19 31.84 18.21 17.94 32.01 +GCC 20 32.10 18.22 17.92 31.77 +GCC 21 31.16 18.79 18.17 31.88 +GCC 22 31.98 18.41 18.26 31.35 +GCC 23 31.15 18.33 18.55 31.97 +GCC 24 31.37 18.48 18.52 31.62 +GCC 25 31.47 18.65 18.30 31.58 +GCC 26 31.87 18.40 18.15 31.57 +GCC 27 31.79 18.93 18.30 30.99 +GCC 28 31.17 18.50 18.94 31.40 +GCC 29 30.95 18.34 19.01 31.71 +GCC 30 31.41 18.62 18.06 31.91 +GCC 31 31.69 18.55 18.60 31.16 +GCC 32 30.93 18.48 18.64 31.95 +GCC 33 31.31 18.78 18.14 31.77 +GCC 34 31.30 18.80 18.34 31.56 +GCC 35 31.03 18.43 18.82 31.72 +GCC 36 31.36 18.62 18.87 31.15 +GCC 37 31.27 18.66 18.51 31.56 +GCC 38 31.03 18.62 18.68 31.67 +GCC 39 30.97 18.78 18.84 31.41 +GCC 40 31.73 17.98 18.61 31.69 +GCC 41 31.02 18.70 18.78 31.49 +GCC 42 31.40 18.73 18.70 31.17 +GCC 43 31.56 18.47 19.10 30.88 +GCC 44 30.82 18.22 19.46 31.51 +GCC 45 31.24 18.89 18.40 31.48 +GCC 46 31.46 19.30 18.58 30.66 +GCC 47 31.54 18.24 18.77 31.45 +GCC 48 31.79 18.02 18.46 31.73 +GCC 49 31.56 18.52 18.26 31.66 +GCC 50 31.36 18.36 18.74 31.54 +GCC 51 30.58 18.59 18.76 32.07 +GCC 52 31.06 18.64 18.79 31.50 +GCC 53 31.61 18.60 18.17 31.62 +GCC 54 30.99 18.94 18.45 31.62 +GCC 55 31.18 18.83 19.04 30.94 +GCC 56 32.06 18.78 18.29 30.87 +GCC 57 31.92 18.31 18.75 31.02 +GCC 58 31.02 18.81 18.38 31.79 +GCC 59 31.61 18.11 18.41 31.87 +GCC 60 31.44 18.79 18.67 31.10 +GCC 61 31.69 18.24 18.63 31.44 +GCC 62 31.42 18.27 18.80 31.51 +GCC 63 31.65 18.55 18.45 31.35 +GCC 64 31.01 18.92 18.45 31.62 +GCC 65 31.64 18.14 18.19 32.03 +GCC 66 31.36 18.73 18.23 31.68 +GCC 67 31.38 18.32 18.30 32.00 +GCC 68 31.42 18.17 18.58 31.83 +GCC 69 30.92 19.26 18.48 31.34 +GCC 70 31.47 18.60 18.31 31.62 +GCC 71 31.47 18.52 18.42 31.59 +GCC 72 31.45 18.84 18.74 30.96 +GCC 73 31.62 18.20 18.52 31.65 +GCC 74 31.49 18.05 18.87 31.59 +GCC 75 31.44 18.36 18.46 31.75 +GCC 76 31.71 18.40 18.42 31.46 +GCC 77 31.86 17.97 18.43 31.74 +GCC 78 31.26 18.82 18.45 31.47 +GCC 79 31.50 18.77 17.94 31.80 +GCC 80 31.23 18.60 18.48 31.68 +GCC 81 31.67 18.49 18.37 31.47 +GCC 82 31.49 18.40 18.47 31.64 +GCC 83 31.50 18.67 18.08 31.75 +GCC 84 31.56 17.94 18.46 32.03 +GCC 85 31.56 18.77 18.20 31.46 +GCC 86 31.68 18.16 18.38 31.78 +GCC 87 30.95 18.35 19.10 31.60 +GCC 88 31.91 18.88 18.31 30.90 +GCC 89 31.82 18.46 18.53 31.20 +GCC 90 31.64 18.60 18.54 31.22 +GCC 91 31.76 18.66 18.17 31.41 +GCC 92 32.12 18.25 18.42 31.22 +GCC 93 31.22 18.20 18.60 31.98 +GCC 94 31.07 18.63 18.61 31.69 +GCC 95 31.47 18.22 18.26 32.05 +GCC 96 31.35 18.71 18.66 31.28 +GCC 97 31.63 18.36 18.10 31.92 +GCC 98 31.83 18.22 18.42 31.53 +GCC 99 31.60 18.12 18.44 31.84 +GCC 100 31.04 18.96 18.50 31.49 +GCC 101 31.74 18.57 18.75 30.94 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count -RL 101 25000 -# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count -# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +RL 101 25001 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 17 10 ID 2 8 1 @@ -382,17 +474,17 @@ IC 85 0 0 0 1 IC 88 0 3 0 0 IC 92 0 0 0 1 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. -COV [1-1] 1 30808 -COV [2-2] 2 5369 -COV [3-3] 3 1121 -COV [4-4] 4 384 -COV [5-5] 5 65 -COV [6-6] 6 45 +COV [1-1] 1 31856 +COV [2-2] 2 5793 +COV [3-3] 3 1266 +COV [4-4] 4 489 +COV [5-5] 5 160 +COV [6-6] 6 49 COV [7-7] 7 36 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 15.385 0.000 0.000 0.000 0.000 0.000 -GCD 6.6 23.077 0.086 0.086 0.086 0.086 0.086 -GCD 38.0 30.769 0.141 0.141 0.141 0.141 0.141 -GCD 40.0 61.538 0.141 0.141 0.202 0.212 0.288 -GCD 41.0 92.308 0.172 0.172 0.197 0.222 0.258 -GCD 42.0 100.000 0.152 0.152 0.152 0.152 0.152 +GCD 6.6 23.077 0.085 0.085 0.085 0.085 0.085 +GCD 38.0 30.769 0.140 0.140 0.140 0.140 0.140 +GCD 40.0 69.231 0.140 0.140 0.200 0.210 0.285 +GCD 41.0 92.308 0.195 0.195 0.220 0.255 0.255 +GCD 42.0 100.000 0.150 0.150 0.150 0.150 0.150 diff --git a/results/report.html b/results/report.html index 75581cc..1faa2cc 100644 --- a/results/report.html +++ b/results/report.html @@ -22,11 +22,11 @@ - + - [insane_legentil] Nextflow Workflow Report + [jolly_lichterman] Nextflow Workflow Report