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Updated CHANGELOG.md
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CHANGELOG.md

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@@ -10,14 +10,18 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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- [Jaime Ozáez](https://github.com/jaimeozaezm)
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- [Alejandro Bernabeu](https://github.com/Aberdur)
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- [Sergio Olmos](https://github.com/OPSergio)
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### Template fixes and updates
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- Fixed bug in 08_create_quality_control_summary.sh (viralrecon template) [#447](https://github.com/BU-ISCIII/buisciii-tools/pull/447).
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- Updated `services.json` file in order to properly delete folders and files when running clean module [#451](https://github.com/BU-ISCIII/buisciii-tools/pull/451).
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- Add assets for Updating Lineage-Defining Mutations from outbreak-info [#452](https://github.com/BU-ISCIII/buisciii-tools/pull/452)
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- Fix get_percentage_LDM.py to Use Versioned CSV File[#453](https://github.com/BU-ISCIII/buisciii-tools/pull/453).
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- Moved `lablog_bam2fq.sh` to `RAW/`** to centralize BAM-to-FASTQ processing [#455](https://github.com/BU-ISCIII/buisciii-tools/pull/455)
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- Updated `_01_bam2fq.sh` to correctly detect all BAM files in `RAW/` [#455](https://github.com/BU-ISCIII/buisciii-tools/pull/455)
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- Refactored `_02_pgzip.sh` to compress `.fastq` files and remove uncompressed versions [#455](https://github.com/BU-ISCIII/buisciii-tools/pull/455)
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- Created `_03_symlink.sh` to manage symbolic links in `ANALYSIS/00-reads/`, preventing broken links [#455](https://github.com/BU-ISCIII/buisciii-tools/pull/455)
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### Modules
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#### Added enhancements

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