diff --git a/README.md b/README.md index 16041a1..398e1b2 100644 --- a/README.md +++ b/README.md @@ -255,7 +255,7 @@ Module to map reads on 3-letter converted genome. CH sites)>0.8 and #(mCH sites)>5, then tag XS:i:1; or else tag XS:i:0. [Default: 0.5,5] --XSteve Filter definition for tag XS, proposed by Prof. Steve - Jacobson, reads with at least 3 successive mCHH will + Jacobsen, reads with at least 3 successive mCHH will be labeled as XS:i:1,useful for plant genome, which have high mCHG level. Will override --XS option. -M FileName, --multiple-hit=FileName diff --git a/bs_seeker2-align.py b/bs_seeker2-align.py index a76d70d..50ade0f 100755 --- a/bs_seeker2-align.py +++ b/bs_seeker2-align.py @@ -92,7 +92,7 @@ " or else tag XS:i:0. [Default: %default]", default = "0.5,5") # added by weilong # opt_group.add_option("--XSteve", action="store_true", dest="XSteve", - help="Filter definition for tag XS, proposed by Prof. Steve Jacobson, " + help="Filter definition for tag XS, proposed by Prof. Steve Jacobsen, " "reads with at least 3 successive mCHH will be labeled as XS:i:1," "useful for plant genome, which have high mCHG level. " "Will override --XS option.", default = False) # added by weilong