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| 1 | + |
| 2 | +RRSelection: A new simple and efficient software to detect selection region analysis based Variant Call Format |
| 3 | +RRSelection: A Llinkage disequilibrium method to detect selection region across population VCF |
| 4 | + |
| 5 | +1) Introduction |
| 6 | +----------------------------------------------------------------------------------------------------------------- |
| 7 | +################################################################################################################# |
| 8 | + |
| 9 | +This software relies on the zlib library packages [zlib] |
| 10 | + |
| 11 | +----------------------- zlib infomation ---------------------- |
| 12 | +if Lib [zlib] do not work |
| 13 | +you can download form this website and install it |
| 14 | +http://www.zlib.net/ |
| 15 | + |
| 16 | +2) INSTALL Method1 |
| 17 | +---------------------------------------------------------------------------------------------------------------- |
| 18 | +################################################################################################################ |
| 19 | + |
| 20 | +Just execute as follows : |
| 21 | + git clone https://github.com/BGI-shenzhen/RRSelection.git |
| 22 | + chmod 755 configure ; ./configure ; |
| 23 | + make; |
| 24 | + mv RRSelection bin/ ; |
| 25 | + |
| 26 | + |
| 27 | +**Note:** If fail to link,try to <b>re-install</b> the libraries [**_zlib_**](https://zlib.net/) |
| 28 | + |
| 29 | + |
| 30 | +3) INSTALL Method2 |
| 31 | +---------------------------------------------------------------------------------------------------------------- |
| 32 | +################################################################################################################ |
| 33 | +A) Method2 For linux/Unix |
| 34 | + For linux/Unix , execute as follows : |
| 35 | + tar -zxvf RRSelectionXXX.tar.gz |
| 36 | + cd RRSelectionXXX; |
| 37 | + cd src; |
| 38 | + make ; make clean |
| 39 | + ../bin/RRSelection |
| 40 | + |
| 41 | + #I had compiled and installed these gz library packages [zlib] on the linux X64 platform |
| 42 | + if Link do not work ,try Re-install the gz library and copy them to the library Dir |
| 43 | + |
| 44 | + RRSelectionXX/src/include/zlib |
| 45 | + |
| 46 | + |
| 47 | +B) Method2 For macOS platform INSTALL |
| 48 | + you should must pre-install the library [zlib] and copy them to the corresponding library directory |
| 49 | + |
| 50 | + #step1 :Should must <b>re-install</b> the gz library [zlib] |
| 51 | + see [zlib] website |
| 52 | + |
| 53 | + #step2 : # Copy these gz library file into the corresponding library directory |
| 54 | + |
| 55 | + cp libz.a libz.so* RRSelectionXX/src/include/zlib |
| 56 | + |
| 57 | + #step3 : |
| 58 | + sh make.sh # or [make && make clean] |
| 59 | + |
| 60 | + |
| 61 | + |
| 62 | +C) Other Method |
| 63 | +Note if it can't work . follow below B1-B6 or use the static Compiled [RRSelection_static ] |
| 64 | +############################################ |
| 65 | + #autoscan ./ |
| 66 | + #cp configure.scan configure.ac |
| 67 | + |
| 68 | +# if can't work, follow below 6 commands |
| 69 | + B1: aclocal #// src/automake-1.9/aclocal |
| 70 | + B2: autoconf #// src/automake-1.9/autoconf |
| 71 | + B3: autoheader #// src/automake-1.9/autoheader |
| 72 | + B4: automake --add-missing #// src/automake-1.9/automake --add-missing |
| 73 | + B5: ./configure |
| 74 | + B6: make |
| 75 | +############################################# |
| 76 | +#swimming in the sky & flying in the sea# |
| 77 | + |
| 78 | + |
| 79 | + |
| 80 | +4) Contact |
| 81 | +---------------------------------------------------------------------------------------------------------------- |
| 82 | +################################################################################################################ |
| 83 | + |
| 84 | +join the QQ Group : 125293663 |
| 85 | + |
| 86 | + |
| 87 | + |
| 88 | +######################swimming in the sky and flying in the sea ########################### ## |
| 89 | + |
| 90 | + |
| 91 | + |
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