NAMESPACE

# Generated by roxygen2: do not edit by hand

export(InteractionSet_to_pixels)
export(cooler_to_InteractionSet)
export(distance_normalize_pixels)
export(downsample_matrix)
export(dump_cooler)
export(get_axis_labs)
export(get_axis_title)
export(get_figure_dims)
export(karyogram_geoms)
export(nlf_parse_assembly)
export(nlf_read_assembly_file)
export(nlf_read_loop_file)
export(normalize_score_column)
export(pack_cooler_hdf5)
export(patchwork_annotations)
export(patchwork_annotations_2d)
export(patchwork_bedgraph)
export(patchwork_bedgraph_peak_geoms)
export(patchwork_bins)
export(patchwork_cna)
export(patchwork_matrix)
export(patchwork_ogm_contigs)
export(patchwork_region_outlines)
export(patchwork_rot45)
export(patchwork_rotate_annotations)
export(patchwork_xaxis)
export(patchwork_yaxis)
export(plotCombo_matrix_with_kary)
export(plotCombo_pyramid_tracks)
export(plot_hic)
export(plot_hic_histogram)
export(plot_hic_matrix)
export(plot_hic_matrix_pyramid)
export(plot_hic_matrix_to_file)
export(plot_karyotypes)
export(read_compartment_file)
export(read_cooler_bins_hdf5)
export(read_cooler_hdf5)
export(read_cooler_hdf5_rot45)
export(read_matrix_file)
export(read_tad_file)
export(reflect_pixel_matrix)
export(rotate_pix_45)
export(rotate_points_45)
export(translocation_matrix)
export(trim_rot45)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(InteractionSet)
import(Rhdf5lib)
import(Rsamtools)
import(SummarizedExperiment)
import(clugPac)
import(cowplot)
import(data.table)
import(diffHic)
import(dplyr)
import(egg)
import(ggplot2)
import(ggsci)
import(grid)
import(gridExtra)
import(magrittr)
import(rhdf5)
import(rhdf5filters)
import(scales)
import(stringr)
import(tibble)
import(tictoc)
import(tidyr)
import(tidyverse)
import(viridis)