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thanks for providing the code and data for the paper, it's very appreciated. One thing I couldn't find was the cluster -> cell type assignment, that is which cells are ate CMs, etc. From fig 1D of the paper I can deduce that iPSC = cluster 1; PCM = cluster 12, etc, in this seurat object:
Hi @tanyasg,
thanks for providing the code and data for the paper, it's very appreciated. One thing I couldn't find was the cluster -> cell type assignment, that is which cells are ate CMs, etc. From fig 1D of the paper I can deduce that iPSC = cluster 1; PCM = cluster 12, etc, in this seurat object:
https://open.quiltdata.com/b/allencell/packages/aics/wtc11_hipsc_cardiomyocyte_scrnaseq_d0_to_d90/tree/latest/protocol1_D0_D12_D24_D90/
Is this correct?
Cheers,
António
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