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config_tasks.sh
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#!/bin/bash
# shellcheck disable=SC2034 # Ignore unused parameters.
# Configuration of tasks for runtest.sh
# (Cleans directory, modifies step activation, modifies JSON, generates step scripts.)
# Mandatory functions:
# Clean Performs cleanup before (argument=1) and after (argument=2) running.
# AdjustJson Modifies the JSON file.
# MakeScriptAli Generates the AliPhysics script.
# MakeScriptO2 Generates the O2 script.
# MakeScriptPostprocess Generates the postprocessing script.
####################################################################################################
# Here you can select the AliPhysics and O2Physics Git branches to load. (You need to have them built with aliBuild.)
# BRANCH_ALI="master"
# ENV_ALI="alienv setenv AliPhysics/latest-${BRANCH_ALI}-o2 -c"
# BRANCH_O2="master"
# ENV_O2="alienv setenv O2Physics/latest-${BRANCH_O2}-o2 -c"
# Steps
DOCLEAN=1 # Delete created files (before and after running tasks).
DOCONVERT=1 # Convert AliESDs.root to AO2D.root.
DOALI=1 # Run AliPhysics tasks.
DOO2=1 # Run O2 tasks.
DOPOSTPROCESS=1 # Run output postprocessing. (Comparison plots. Requires DOALI=1 and/or DOO2=1)
# Disable incompatible steps.
[ "$INPUT_IS_O2" -eq 1 ] && { DOCONVERT=0; DOALI=0; }
DATABASE_O2="workflows.yml" # Workflow specification database
MAKE_GRAPH=0 # Make topology graph.
MAKE_PERF_STATS=0 # Produce performance profiling stats.
# Activation of O2 workflows
# Trigger selection
DOO2_TRIGSEL=0 # event-selection
# Vertexing
DOO2_SKIM=0 # hf-track-index-skim-creator
DOO2_CAND_2PRONG=0 # hf-candidate-creator-2prong
DOO2_CAND_3PRONG=0 # hf-candidate-creator-3prong
DOO2_CAND_CASC=0 # hf-candidate-creator-cascade
DOO2_CAND_LB=0 # hf-candidate-creator-lb
DOO2_CAND_X=0 # hf-candidate-creator-x
DOO2_CAND_CHIC=0 # hf-candidate-creator-chic
DOO2_CAND_XICC=0 # hf-candidate-creator-xicc
DOO2_CAND_B0=0 # hf-candidate-creator-b0
DOO2_CAND_BPLUS=0 # hf-candidate-creator-bplus
DOO2_CAND_DSTAR=0 # hf-candidate-creator-dstar
DOO2_CAND_XIC0OC0=0 # hf-candidate-creator-xic0-omegac0
DOO2_CAND_XIC_XIPIPI=0 # hf-candidate-creator-xic-to-xi-pi-pi
# Selectors
DOO2_SEL_D0=0 # hf-candidate-selector-d0
DOO2_SEL_DS=0 # hf-candidate-selector-ds-to-k-k-pi
DOO2_SEL_DPLUS=0 # hf-candidate-selector-dplus-to-pi-k-pi
DOO2_SEL_LC=0 # hf-candidate-selector-lc
DOO2_SEL_LB=0 # hf-candidate-selector-lb-to-lc-pi
DOO2_SEL_XIC=0 # hf-candidate-selector-xic-to-p-k-pi
DOO2_SEL_JPSI=0 # hf-candidate-selector-jpsi
DOO2_SEL_X=0 # hf-candidate-selector-x-to-jpsi-pi-pi
DOO2_SEL_CHIC=0 # hf-candidate-selector-chic-to-jpsi-gamma
DOO2_SEL_LCK0SP=0 # hf-candidate-selector-lc-to-k0s-p
DOO2_SEL_XICC=0 # hf-candidate-selector-xicc-to-p-k-pi-pi
DOO2_SEL_B0=0 # hf-candidate-selector-b0-to-d-pi
DOO2_SEL_BPLUS=0 # hf-candidate-selector-bplus-to-d0-pi
DOO2_SEL_DSTAR=0 # hf-candidate-selector-dstar
DOO2_SEL_TOXIPI=0 # hf-candidate-selector-to-xi-pi
DOO2_SEL_XIC_XIPIPI=0 # hf-candidate-selector-xic-to-xi-pi-pi
# Analysis tasks
DOO2_TASK_D0=1 # hf-task-d0
DOO2_TASK_DS=0 # hf-task-ds
DOO2_TASK_DPLUS=0 # hf-task-dplus
DOO2_TASK_LC=1 # hf-task-lc
DOO2_TASK_LB=0 # hf-task-lb
DOO2_TASK_XIC=0 # hf-task-xic
DOO2_TASK_JPSI=0 # hf-task-jpsi
DOO2_TASK_X=0 # hf-task-x
DOO2_TASK_CHIC=0 # hf-task-chic
DOO2_TASK_LCK0SP=0 # hf-task-lc-to-k0s-p
DOO2_TASK_XICC=0 # hf-task-xicc
DOO2_TASK_B0=0 # hf-task-b0
DOO2_TASK_BPLUS=0 # hf-task-bplus
DOO2_TASK_DSTAR=0 # hf-task-dstar-to-d0-pi
DOO2_TASK_XIC_XIPIPI=0 # hf-task-xic-to-xi-pi-pi
# Tree creators
DOO2_TREE_D0=0 # hf-tree-creator-d0-to-k-pi
DOO2_TREE_LC=0 # hf-tree-creator-lc-to-p-k-pi (only Run 3)
DOO2_TREE_LB=0 # hf-tree-creator-lb-to-lc-pi (only Run 5)
DOO2_TREE_X=0 # hf-tree-creator-x-to-jpsi-pi-pi
DOO2_TREE_XICC=0 # hf-tree-creator-xicc-to-p-k-pi-pi
DOO2_TREE_CHIC=0 # hf-tree-creator-chic-to-jpsi-gamma
DOO2_TREE_BPLUS=0 # hf-tree-creator-bplus-to-d0-pi
DOO2_TREE_LCK0SP=0 # hf-tree-creator-lc-to-k0s-p
DOO2_TREE_TOXIPI=0 # hf-tree-creator-to-xi-pi
DOO2_TREE_XIC_XIPIPI=0 # hf-tree-creator-xic-to-xi-pi-pi
# Derived-data creators
DOO2_DATA_D0=0 # hf-derived-data-creator-d0-to-k-pi
DOO2_DATA_LC=0 # hf-derived-data-creator-lc-to-p-k-pi
DOO2_DATA_BPLUS=0 # hf-derived-data-creator-bplus-to-d0-pi
DOO2_DATA_DPLUS=0 # hf-derived-data-creator-dplus-to-pi-k-pi
# Correlations
DOO2_CORR_D0D0BAR_DATA=0 # hf-correlator-d0-d0bar
DOO2_CORR_D0D0BAR_MCREC=0 # hf-correlator-d0-d0bar_mc-rec
DOO2_CORR_D0D0BAR_MCGEN=0 # hf-correlator-d0-d0bar_mc-gen
DOO2_CORR_DPLUSDMINUS_DATA=0 # hf-correlator-dplus-dminus
DOO2_CORR_DPLUSDMINUS_MCREC=0 # hf-correlator-dplus-dminus_mc-rec
DOO2_CORR_DPLUSDMINUS_MCGEN=0 # hf-correlator-dplus-dminus_mc-gen
DOO2_CORR_D0HADRON=0 # hf-correlator-d0-hadrons
DOO2_CORR_DPLUSHADRON=0 # hf-correlator-dplus-hadrons
DOO2_CORR_DSHADRON=0 # hf-correlator-ds-hadrons
DOO2_TASK_D0HADRON=0 # hf-task-correlation-d0-hadrons
DOO2_TASK_FLOW=0 # hf-task-flow
# Jets
DOO2_JET_FIND=0 # je-jet-finder-d0
DOO2_JET_FIND_QA=0 # je-jet-finder-d0-qa
DOO2_JET_MATCH=0 # je-jet-matching-mc-d0-ch
DOO2_JET_SUB=0 # je-jet-substructure-d0
DOO2_JET_SUB_OUT=0 # je-jet-substructure-d0-output
# QA
DOO2_REJ_ALICE3=0 # hf-task-qa-pid-rejection
DOO2_QA_EFF=0 # qa-efficiency
DOO2_QA_EVTRK=0 # qa-event-track
DOO2_MC_VALID=0 # hf-task-mc-validation
# PID
DOO2_PID_TPC=0 # pid-tpc
DOO2_PID_TOF=0 # pid-tof-full/alice3-pid-tof
DOO2_PID_TOF_QA=0 # pid-tof-qa-mc
DOO2_PID_BAYES=0 # pid-bayes
# Converters (Consider setting these per input case via INPUT_TASK_CONFIG.)
DOO2_CONV_MC=0 # mc-converter
DOO2_CONV_FDD=0 # fdd-converter
DOO2_CONV_COLL=0 # collision-converter
DOO2_CONV_MCCOLL=0 # mccollision-converter
DOO2_CONV_ZDC=0 # zdc-converter
DOO2_CONV_BC=0 # bc-converter
DOO2_CONV_TRKEX_0_1=0 # tracks-extra-converter (0→1)
DOO2_CONV_TRKEX_0_2=0 # tracks-extra-v002-converter (0→2)
DOO2_CONV_TRKEX_1_2=0 # tracks-extra-v002-converter (1→2)
DOO2_CONV_V0=0 # v0converter
DOO2_CONV_MFT=0 # mft-tracks-converter
# Selection cuts
APPLYCUTS_D0=1 # Apply D0 selection cuts.
APPLYCUTS_DS=0 # Apply Ds selection cuts.
APPLYCUTS_DPLUS=0 # Apply D+ selection cuts.
APPLYCUTS_LC=1 # Apply Λc selection cuts.
APPLYCUTS_LB=0 # Apply Λb selection cuts.
APPLYCUTS_XIC=0 # Apply Ξc selection cuts.
APPLYCUTS_JPSI=0 # Apply J/ψ selection cuts.
APPLYCUTS_X=0 # Apply X selection cuts.
APPLYCUTS_CHIC=0 # Apply χc(1p) selection cuts.
APPLYCUTS_LCK0SP=0 # Apply Λc → K0S p selection cuts.
APPLYCUTS_XICC=0 # Apply Ξcc selection cuts.
APPLYCUTS_B0=0 # Apply B0 selection cuts.
APPLYCUTS_BPLUS=0 # Apply B+ selection cuts.
SAVETREES=0 # Save O2 tables to trees.
USEO2VERTEXER=1 # Use the O2 vertexer in AliPhysics.
USEALIEVCUTS=1 # Use AliEventCuts in AliPhysics (as used by conversion task)
DORATIO=1 # Plot histogram ratios in comparison.
####################################################################################################
# Clean before (argument=1) and after (argument=2) running.
function Clean {
# Cleanup before running
[ "$1" -eq 1 ] && { bash "$DIR_TASKS/clean.sh" || ErrExit; }
# Cleanup after running
[ "$1" -eq 2 ] && {
rm -f "$LISTFILES_ALI" "$LISTFILES_O2" "$SCRIPT_ALI" "$SCRIPT_O2" "$SCRIPT_POSTPROCESS" || ErrExit "Failed to rm created files."
[ "$JSON_EDIT" ] && { rm "$JSON_EDIT" || ErrExit "Failed to rm $JSON_EDIT."; }
[ "$DATABASE_O2_EDIT" ] && { rm "$DATABASE_O2_EDIT" || ErrExit "Failed to rm $DATABASE_O2_EDIT."; }
}
return 0
}
# Modify the JSON file.
function AdjustJson {
# Make a copy of the default JSON file to modify it.
JSON_EDIT="${JSON/.json/_edit.json}"
cp "$JSON" "$JSON_EDIT" || ErrExit "Failed to cp $JSON $JSON_EDIT."
JSON="$JSON_EDIT"
# Collision system
MsgWarn "Setting collision system $INPUT_SYS"
# Run 2/3/5
MsgWarn "Using Run $INPUT_RUN"
if [ "$INPUT_RUN" -eq 2 ]; then
ReplaceString "\"processRun2\": \"false\"" "\"processRun2\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun3\": \"true\"" "\"processRun3\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun2\": \"0\"" "\"processRun2\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun3\": \"1\"" "\"processRun3\": \"0\"" "$JSON" || ErrExit "Failed to edit $JSON."
elif [ "$INPUT_RUN" -eq 3 ]; then
ReplaceString "\"processRun2\": \"true\"" "\"processRun2\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun3\": \"false\"" "\"processRun3\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun2\": \"1\"" "\"processRun2\": \"0\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processRun3\": \"0\"" "\"processRun3\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# MC
if [ "$INPUT_IS_MC" -eq 1 ]; then
MsgWarn "Using MC data"
ReplaceString "\"isMC\": \"false\"" "\"isMC\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMc\": \"false\"" "\"processMc\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcStd\": \"false\"" "\"processMcStd\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcWithDCAFitterAll\": \"false\"" "\"processMcWithDCAFitterAll\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcWithDCAFitterN\": \"false\"" "\"processMcWithDCAFitterN\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcAll\": \"false\"" "\"processMcAll\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMC\": \"false\"" "\"processMC\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMC\": \"0\"" "\"processMC\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processData\": \"true\"" "\"processData\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDataStd\": \"true\"" "\"processDataStd\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDataWithDCAFitterN\": \"true\"" "\"processDataWithDCAFitterN\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
MsgWarn "Using real data"
ReplaceString "\"isMC\": \"true\"" "\"isMC\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMc\": \"true\"" "\"processMc\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcStd\": \"true\"" "\"processMcStd\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcWithDCAFitterAll\": \"true\"" "\"processMcWithDCAFitterAll\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcWithDCAFitterN\": \"true\"" "\"processMcWithDCAFitterN\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMcAll\": \"true\"" "\"processMcAll\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMC\": \"true\"" "\"processMC\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processMC\": \"1\"" "\"processMC\": \"0\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processData\": \"false\"" "\"processData\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDataStd\": \"false\"" "\"processDataStd\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDataWithDCAFitterN\": \"false\"" "\"processDataWithDCAFitterN\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# event-selection
ReplaceString "\"syst\": \"pp\"" "\"syst\": \"$INPUT_SYS\"" "$JSON" || ErrExit "Failed to edit $JSON."
# hf-track-index-skim-creator-tag-sel-collisions
if [ $DOO2_TRIGSEL -eq 1 ]; then
# trigger selection
ReplaceString "\"processTrigSel\": \"false\"" "\"processTrigSel\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processNoTrigSel\": \"true\"" "\"processNoTrigSel\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# hf-track-index-skim-creator
if [[ $DOO2_CAND_DSTAR -eq 11 ]]; then
ReplaceString "\"doDstar\": \"false\"" "\"doDstar\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# hf-track-index-skim-creator-cascades
if [[ $DOO2_CAND_CASC -eq 1 || $DOO2_SEL_LCK0SP -eq 1 || $DOO2_TASK_LCK0SP -eq 1 || $DOO2_TREE_LCK0SP -eq 1 ]]; then
ReplaceString "\"processCascades\": \"false\"" "\"processCascades\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processNoCascades\": \"true\"" "\"processNoCascades\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# hf-track-index-skim-creator-lf-cascades
if [[ $DOO2_CAND_XIC0OC0 -eq 1 || $DOO2_SEL_TOXIPI -eq 1 || $DOO2_TREE_TOXIPI -eq 1 || $DOO2_CAND_XIC_XIPIPI -eq 1 || $DOO2_SEL_XIC_XIPIPI -eq 1 || $DOO2_TASK_XIC_XIPIPI -eq 1 || $DOO2_TREE_XIC_XIPIPI -eq 1 ]]; then
ReplaceString "\"processLfCascades\": \"false\"" "\"processLfCascades\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processNoLfCascades\": \"true\"" "\"processNoLfCascades\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# timestamp-task
if [[ "$INPUT_IS_MC" -eq 1 && "$INPUT_RUN" -eq 2 ]]; then
ReplaceString "\"isRun2MC\": \"false\"" "\"isRun2MC\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"isRun2MC\": \"true\"" "\"isRun2MC\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# track-selection
if [ "$INPUT_RUN" -eq 3 ]; then
ReplaceString "\"isRun3\": \"false\"" "\"isRun3\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"isRun3\": \"true\"" "\"isRun3\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# tracks-extra-v002-converter
if [ $DOO2_CONV_TRKEX_0_2 -eq 1 ]; then
ReplaceString "\"processV000ToV002\": \"false\"" "\"processV000ToV002\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processV001ToV002\": \"true\"" "\"processV001ToV002\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
elif [ $DOO2_CONV_TRKEX_1_2 -eq 1 ]; then
ReplaceString "\"processV000ToV002\": \"true\"" "\"processV000ToV002\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processV001ToV002\": \"false\"" "\"processV001ToV002\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# lambdakzero-builder
if [ "$INPUT_RUN" -eq 2 ]; then
ReplaceString "\"isRun2\": \"0\"" "\"isRun2\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"isRun2\": \"1\"" "\"isRun2\": \"0\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# hf-track-index-skim-creator..., hf-candidate-creator-...
if [ "$INPUT_RUN" -eq 2 ]; then
ReplaceString "\"isRun2\": \"false\"" "\"isRun2\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"isRun2\": \"true\"" "\"isRun2\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# tof-event-time
if [ "$INPUT_RUN" -eq 3 ]; then
ReplaceString "\"processFT0\": \"false\"" "\"processFT0\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processNoFT0\": \"true\"" "\"processNoFT0\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOnlyFT0\": \"true\"" "\"processOnlyFT0\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"processFT0\": \"true\"" "\"processFT0\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processNoFT0\": \"true\"" "\"processNoFT0\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOnlyFT0\": \"true\"" "\"processOnlyFT0\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# hf-task-flow
if [ "$INPUT_RUN" -eq 3 ]; then
ReplaceString "\"processSameRun3\": \"false\"" "\"processSameRun3\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processSameRun2\": \"true\"" "\"processSameRun2\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"processSameRun3\": \"true\"" "\"processSameRun3\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processSameRun2\": \"false\"" "\"processSameRun2\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# jet-finder-charged-d0-qa
if [ "$INPUT_IS_MC" -eq 1 ]; then
ReplaceString "\"processJetsData\": \"true\"" "\"processJetsData\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"processJetsMCD\": \"true\"" "\"processJetsMCD\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processJetsMCP\": \"true\"" "\"processJetsMCP\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# jet-substructure...
if [ "$INPUT_IS_MC" -eq 1 ]; then
ReplaceString "\"processChargedJetsHF_data\": \"true\"" "\"processChargedJetsHF_data\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_data\": \"true\"" "\"processOutput_data\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_data\": \"false\"" "\"processDummy_data\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
else
ReplaceString "\"processChargedJetsHF_mcd\": \"true\"" "\"processChargedJetsHF_mcd\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processChargedJetsHFMCP_mcp\": \"true\"" "\"processChargedJetsHFMCP_mcp\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_mcd\": \"true\"" "\"processOutput_mcd\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_mcp\": \"true\"" "\"processOutput_mcp\": \"false\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_mcd\": \"false\"" "\"processDummy_mcd\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_mcp\": \"false\"" "\"processDummy_mcp\": \"true\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
ReplaceString "\"processChargedJetsHF_data\"" "\"processChargedJetsHF\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processChargedJetsHF_mcd\"" "\"processChargedJetsHF\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processChargedJetsHFMCP_mcp\"" "\"processChargedJetsHFMCP\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_data\"" "\"processOutput\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_mcd\"" "\"processOutput\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processOutput_mcp\"" "\"processOutput\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_data\"" "\"processDummy\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_mcd\"" "\"processDummy\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"processDummy_mcp\"" "\"processDummy\"" "$JSON" || ErrExit "Failed to edit $JSON."
# Enable D0 selection.
if [ $APPLYCUTS_D0 -eq 1 ]; then
MsgWarn "Using D0 selection cuts"
ReplaceString "\"selectionFlagD0\": \"0\"" "\"selectionFlagD0\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"selectionFlagD0bar\": \"0\"" "\"selectionFlagD0bar\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Ds selection.
if [ $APPLYCUTS_DS -eq 1 ]; then
MsgWarn "Using Ds selection cuts"
ReplaceString "\"selectionFlagDs\": \"0\"" "\"selectionFlagDs\": \"7\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable D+ selection.
if [ $APPLYCUTS_DPLUS -eq 1 ]; then
MsgWarn "Using D+ selection cuts"
ReplaceString "\"selectionFlagDplus\": \"0\"" "\"selectionFlagDplus\": \"7\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Λc selection.
if [ $APPLYCUTS_LC -eq 1 ]; then
MsgWarn "Using Λc selection cuts"
ReplaceString "\"selectionFlagLc\": \"0\"" "\"selectionFlagLc\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Λb selection.
if [ $APPLYCUTS_LB -eq 1 ]; then
MsgWarn "Using Λb selection cuts"
ReplaceString "\"selectionFlagLb\": \"0\"" "\"selectionFlagLb\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Ξc selection.
if [ $APPLYCUTS_XIC -eq 1 ]; then
MsgWarn "Using Ξc selection cuts"
ReplaceString "\"selectionFlagXic\": \"0\"" "\"selectionFlagXic\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable J/ψ selection.
if [ $APPLYCUTS_JPSI -eq 1 ]; then
MsgWarn "Using J/ψ selection cuts"
ReplaceString "\"selectionFlagJpsi\": \"0\"" "\"selectionFlagJpsi\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable X(3872) selection.
if [ $APPLYCUTS_X -eq 1 ]; then
MsgWarn "Using X(3872) selection cuts"
ReplaceString "\"selectionFlagX\": \"0\"" "\"selectionFlagX\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable χc(1p) selection.
if [ $APPLYCUTS_CHIC -eq 1 ]; then
MsgWarn "Using χc(1p) selection cuts"
ReplaceString "\"selectionFlagChic\": \"0\"" "\"selectionFlagChic\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Λc → K0S p selection.
if [ $APPLYCUTS_LCK0SP -eq 1 ]; then
MsgWarn "Using Λc → K0S p selection cuts"
ReplaceString "\"selectionFlagLcToK0sP\": \"0\"" "\"selectionFlagLcToK0sP\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
ReplaceString "\"selectionFlagLcbarToK0sP\": \"0\"" "\"selectionFlagLcbarToK0sP\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable Ξcc selection.
if [ $APPLYCUTS_XICC -eq 1 ]; then
MsgWarn "Using Ξcc selection cuts"
ReplaceString "\"selectionFlagXicc\": \"0\"" "\"selectionFlagXicc\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable B0 selection.
if [ $APPLYCUTS_B0 -eq 1 ]; then
MsgWarn "Using B0 selection cuts"
ReplaceString "\"selectionFlagB0\": \"0\"" "\"selectionFlagB0\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
# Enable B+ selection.
if [ $APPLYCUTS_BPLUS -eq 1 ]; then
MsgWarn "Using B+ selection cuts"
ReplaceString "\"selectionFlagBplus\": \"0\"" "\"selectionFlagBplus\": \"1\"" "$JSON" || ErrExit "Failed to edit $JSON."
fi
}
# Generate the O2 script containing the full workflow specification.
function MakeScriptO2 {
# Suffix to distinguish versions of the track index skim creator in the workflow database
SUFFIX_SKIM_MASK="_skimX" # suffix mask to be replaced in the workflow names
SUFFIX_SKIM="" # the actual suffix to be used instead of the mask
# Λc → K0S p cascade reconstruction
[[ $DOO2_CAND_CASC -eq 1 || $DOO2_SEL_LCK0SP -eq 1 || $DOO2_TASK_LCK0SP -eq 1 || $DOO2_TREE_LCK0SP -eq 1 ]] && SUFFIX_SKIM="_v0"
# Ξc0/Ωc0 → Ξ π LF cascade reconstruction
[[ $DOO2_CAND_XIC0OC0 -eq 1 || $DOO2_SEL_TOXIPI -eq 1 || $DOO2_TREE_TOXIPI -eq 1 || $DOO2_CAND_XIC_XIPIPI -eq 1 || $DOO2_SEL_XIC_XIPIPI -eq 1 || $DOO2_TASK_XIC_XIPIPI -eq 1 || $DOO2_TREE_XIC_XIPIPI -eq 1 ]] && SUFFIX_SKIM="_casc-lf"
# Suffix to distinguish versions of the same workflow for different runs in the workflow database
SUFFIX_RUN_MASK="_runX" # suffix mask to be replaced in the workflow names
SUFFIX_RUN="_run${INPUT_RUN}" # the actual suffix to be used instead of the mask
# Suffix to distinguish the workflows that run on derived data with parent access (skims)
SUFFIX_DER_MASK="_derX" # suffix mask to be replaced in the workflow names
[ "$INPUT_PARENT_MASK" ] && SUFFIX_DER="_derived" || SUFFIX_DER="" # the actual suffix to be used instead of the mask
WORKFLOWS=""
# Trigger selection
[ $DOO2_TRIGSEL -eq 1 ] && WORKFLOWS+=" o2-analysis-event-selection"
# Vertexing
[ $DOO2_SKIM -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-track-index-skim-creator${SUFFIX_SKIM}"
[ $DOO2_CAND_2PRONG -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-2prong${SUFFIX_DER}"
[ $DOO2_CAND_3PRONG -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-3prong${SUFFIX_DER}"
[ $DOO2_CAND_LB -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-lb"
[ $DOO2_CAND_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-x"
[ $DOO2_CAND_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-chic"
[ $DOO2_CAND_CASC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-cascade${SUFFIX_DER}"
[ $DOO2_CAND_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-xicc"
[ $DOO2_CAND_B0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-b0"
[ $DOO2_CAND_BPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-bplus"
[ $DOO2_CAND_DSTAR -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-dstar"
[ $DOO2_CAND_XIC0OC0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-xic0-omegac0${SUFFIX_DER}"
[ $DOO2_CAND_XIC_XIPIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-creator-xic-to-xi-pi-pi${SUFFIX_DER}"
# Selectors
[ $DOO2_SEL_D0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-d0"
[ $DOO2_SEL_JPSI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-jpsi${SUFFIX_RUN}"
[ $DOO2_SEL_DS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-ds-to-k-k-pi"
[ $DOO2_SEL_DPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-dplus-to-pi-k-pi"
[ $DOO2_SEL_LC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-lc"
[ $DOO2_SEL_LB -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-lb-to-lc-pi"
[ $DOO2_SEL_XIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-xic-to-p-k-pi"
[ $DOO2_SEL_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-x-to-jpsi-pi-pi"
[ $DOO2_SEL_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-chic-to-jpsi-gamma"
[ $DOO2_SEL_LCK0SP -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-lc-to-k0s-p"
[ $DOO2_SEL_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-xicc-to-p-k-pi-pi"
[ $DOO2_SEL_B0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-b0-to-d-pi"
[ $DOO2_SEL_BPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-bplus-to-d0-pi"
[ $DOO2_SEL_DSTAR -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-dstar-to-d0-pi"
[ $DOO2_SEL_TOXIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-to-xi-pi"
[ $DOO2_SEL_XIC_XIPIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-candidate-selector-xic-to-xi-pi-pi"
# Analysis tasks
[ $DOO2_TASK_D0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-d0"
[ $DOO2_TASK_JPSI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-jpsi"
[ $DOO2_TASK_DS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-ds"
[ $DOO2_TASK_DPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-dplus"
[ $DOO2_TASK_LC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-lc"
[ $DOO2_TASK_LB -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-lb"
[ $DOO2_TASK_XIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-xic"
[ $DOO2_TASK_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-x"
[ $DOO2_TASK_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-chic"
[ $DOO2_TASK_LCK0SP -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-lc-to-k0s-p"
[ $DOO2_TASK_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-xicc"
[ $DOO2_TASK_B0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-b0"
[ $DOO2_TASK_BPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-bplus"
[ $DOO2_TASK_DSTAR -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-dstar-to-d0-pi"
[ $DOO2_TASK_XIC_XIPIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-xic-to-xi-pi-pi"
# Tree creators
[ $DOO2_TREE_D0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-d0-to-k-pi"
[ $DOO2_TREE_LC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-lc-to-p-k-pi"
[ $DOO2_TREE_LB -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-lb-to-lc-pi"
[ $DOO2_TREE_X -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-x-to-jpsi-pi-pi"
[ $DOO2_TREE_XICC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-xicc-to-p-k-pi-pi"
[ $DOO2_TREE_CHIC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-chic-to-jpsi-gamma"
[ $DOO2_TREE_BPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-bplus-to-d0-pi"
[ $DOO2_TREE_LCK0SP -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-lc-to-k0s-p"
[ $DOO2_TREE_TOXIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-to-xi-pi"
[ $DOO2_TREE_XIC_XIPIPI -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-tree-creator-xic-to-xi-pi-pi"
# Derive-data creators
[ $DOO2_DATA_D0 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-derived-data-creator-d0-to-k-pi"
[ $DOO2_DATA_LC -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-derived-data-creator-lc-to-p-k-pi"
[ $DOO2_DATA_BPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-derived-data-creator-bplus-to-d0-pi"
[ $DOO2_DATA_DPLUS -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-derived-data-creator-dplus-to-pi-k-pi"
# Correlations
WF_CORR=""
[ $DOO2_CORR_D0D0BAR_DATA -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-d0-d0bar o2-analysis-hf-task-correlation-d-dbar"
[ $DOO2_CORR_D0D0BAR_MCREC -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-d0-d0bar_mc-rec o2-analysis-hf-task-correlation-d-dbar_mc-rec"
[ $DOO2_CORR_D0D0BAR_MCGEN -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-d0-d0bar_mc-gen o2-analysis-hf-task-correlation-d-dbar_mc-gen"
[ $DOO2_CORR_DPLUSDMINUS_DATA -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-dplus-dminus o2-analysis-hf-task-correlation-d-dbar"
[ $DOO2_CORR_DPLUSDMINUS_MCREC -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-dplus-dminus_mc-rec o2-analysis-hf-task-correlation-d-dbar_mc-rec"
[ $DOO2_CORR_DPLUSDMINUS_MCGEN -eq 1 ] && WF_CORR="o2-analysis-hf-correlator-dplus-dminus_mc-gen o2-analysis-hf-task-correlation-d-dbar_mc-gen"
[ "$WF_CORR" ] && WORKFLOWS+=" $WF_CORR"
[ $DOO2_CORR_D0HADRON -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-correlator-d0-hadrons"
[ $DOO2_CORR_DPLUSHADRON -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-correlator-dplus-hadrons"
[ $DOO2_CORR_DSHADRON -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-correlator-ds-hadrons"
[ $DOO2_TASK_D0HADRON -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-correlation-d0-hadrons"
[ $DOO2_TASK_FLOW -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-flow"
# Jets
if [ "$INPUT_IS_MC" -eq 1 ]; then
[ $DOO2_JET_FIND -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-finder-d0-mcd-charged o2-analysis-je-jet-finder-d0-mcp-charged"
[ $DOO2_JET_FIND_QA -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-finder-d0-qa_mc"
[ $DOO2_JET_SUB -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-substructure-d0_mc"
[ $DOO2_JET_SUB_OUT -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-substructure-d0-output_mc"
else
[ $DOO2_JET_FIND -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-finder-d0-data-charged"
[ $DOO2_JET_FIND_QA -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-finder-d0-qa_data"
[ $DOO2_JET_SUB -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-substructure-d0_data"
[ $DOO2_JET_SUB_OUT -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-substructure-d0-output_data"
fi
[ $DOO2_JET_MATCH -eq 1 ] && WORKFLOWS+=" o2-analysis-je-jet-matching-mc-d0-ch"
# QA
[ $DOO2_REJ_ALICE3 -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-qa-pid-rejection"
[ $DOO2_QA_EFF -eq 1 ] && WORKFLOWS+=" o2-analysis-qa-efficiency"
[ $DOO2_QA_EVTRK -eq 1 ] && WORKFLOWS+=" o2-analysis-qa-event-track"
[ $DOO2_MC_VALID -eq 1 ] && WORKFLOWS+=" o2-analysis-hf-task-mc-validation"
# PID
[ $DOO2_PID_TPC -eq 1 ] && WORKFLOWS+=" o2-analysis-pid-tpc"
[ $DOO2_PID_BAYES -eq 1 ] && WORKFLOWS+=" o2-analysis-pid-bayes"
[ $DOO2_PID_TOF -eq 1 ] && WORKFLOWS+=" o2-analysis-pid-tof-full${SUFFIX_RUN}"
[ $DOO2_PID_TOF_QA -eq 1 ] && WORKFLOWS+=" o2-analysis-pid-tof-qa-mc"
# Converters
[ $DOO2_CONV_MC -eq 1 ] && WORKFLOWS+=" o2-analysis-mc-converter"
[ $DOO2_CONV_FDD -eq 1 ] && WORKFLOWS+=" o2-analysis-fdd-converter"
[ $DOO2_CONV_COLL -eq 1 ] && WORKFLOWS+=" o2-analysis-collision-converter"
[ $DOO2_CONV_MCCOLL -eq 1 ] && WORKFLOWS+=" o2-analysis-mccollision-converter"
[ $DOO2_CONV_ZDC -eq 1 ] && WORKFLOWS+=" o2-analysis-zdc-converter"
[ $DOO2_CONV_BC -eq 1 ] && WORKFLOWS+=" o2-analysis-bc-converter"
[ $DOO2_CONV_TRKEX_0_1 -eq 1 ] && WORKFLOWS+=" o2-analysis-tracks-extra-converter"
[[ $DOO2_CONV_TRKEX_0_2 -eq 1 || $DOO2_CONV_TRKEX_1_2 -eq 1 ]] && WORKFLOWS+=" o2-analysis-tracks-extra-v002-converter"
[ $DOO2_CONV_V0 -eq 1 ] && WORKFLOWS+=" o2-analysis-v0converter"
[ $DOO2_CONV_MFT -eq 1 ] && WORKFLOWS+=" o2-analysis-mft-tracks-converter"
# Translate options into arguments of the generating script.
OPT_MAKECMD=""
[ "$INPUT_IS_MC" -eq 1 ] && OPT_MAKECMD+=" --mc"
[ "$DEBUG" -eq 1 ] && OPT_MAKECMD+=" -d"
[ $SAVETREES -eq 1 ] && OPT_MAKECMD+=" -t"
[ $MAKE_GRAPH -eq 1 ] && OPT_MAKECMD+=" -g"
[ $MAKE_PERF_STATS -eq 1 ] && OPT_MAKECMD+=" -p"
# Make a copy of the default workflow database file before modifying it.
DATABASE_O2_EDIT="${DATABASE_O2/.yml/_edit.yml}"
cp "$DATABASE_O2" "$DATABASE_O2_EDIT" || ErrExit "Failed to cp $DATABASE_O2 $DATABASE_O2_EDIT."
DATABASE_O2="$DATABASE_O2_EDIT"
# Replace the workflow version masks with the actual values in the workflow database.
ReplaceString "$SUFFIX_RUN_MASK" "$SUFFIX_RUN" "$DATABASE_O2" || ErrExit "Failed to edit $DATABASE_O2."
ReplaceString "$SUFFIX_SKIM_MASK" "$SUFFIX_SKIM" "$DATABASE_O2" || ErrExit "Failed to edit $DATABASE_O2."
ReplaceString "$SUFFIX_DER_MASK" "$SUFFIX_DER" "$DATABASE_O2" || ErrExit "Failed to edit $DATABASE_O2."
# Derived AO2D input
if [ "$INPUT_PARENT_MASK" ]; then
ReplaceString "PARENT_PATH_MASK" "$INPUT_PARENT_MASK" "$DATABASE_O2" || ErrExit "Failed to edit $DATABASE_O2."
fi
# Generate the O2 command.
MAKECMD="python3 $DIR_EXEC/make_command_o2.py $DATABASE_O2 $OPT_MAKECMD"
O2EXEC=$($MAKECMD -w "$WORKFLOWS")
$MAKECMD -w "$WORKFLOWS" 1> /dev/null 2> /dev/null || ErrExit "Generating of O2 command failed."
[ "$O2EXEC" ] || ErrExit "Nothing to do!"
# Create the script with the full O2 command.
cat << EOF > "$SCRIPT_O2"
#!/bin/bash
FileIn="\$1"
JSON="\$2"
$O2EXEC
EOF
}
function MakeScriptAli {
ALIEXEC="root -b -q -l \"$DIR_TASKS/RunHFTaskLocal.C(\\\"\$FileIn\\\", \\\"\$JSON\\\", $INPUT_IS_MC, $USEO2VERTEXER, $USEALIEVCUTS, $DOO2_JET_FIND, $DOO2_JET_MATCH, $DOO2_JET_SUB)\""
cat << EOF > "$SCRIPT_ALI"
#!/bin/bash
FileIn="\$1"
JSON="\$2"
$ALIEXEC
EOF
}
function MakeScriptPostprocess {
POSTEXEC="echo Postprocessing"
# Compare AliPhysics and O2 histograms.
[[ $DOALI -eq 1 && $DOO2 -eq 1 ]] && {
OPT_COMPARE=""
[ $DOO2_SKIM -eq 1 ] && OPT_COMPARE+=" events tracks skim "
[ $DOO2_CAND_2PRONG -eq 1 ] && OPT_COMPARE+=" cand2 "
[ $DOO2_CAND_3PRONG -eq 1 ] && OPT_COMPARE+=" cand3 "
[ $DOO2_TASK_D0 -eq 1 ] && { OPT_COMPARE+=" d0 "; [ "$INPUT_IS_MC" -eq 1 ] && OPT_COMPARE+=" d0-mc "; }
[ $DOO2_TASK_DS -eq 1 ] && OPT_COMPARE+=" ds "
[ $DOO2_TASK_DPLUS -eq 1 ] && OPT_COMPARE+=" dplus "
[ $DOO2_TASK_LC -eq 1 ] && { OPT_COMPARE+=" lc "; [ "$INPUT_IS_MC" -eq 1 ] && OPT_COMPARE+=" lc-mc-pt lc-mc-prompt lc-mc-nonprompt lc-mc-eta lc-mc-phi "; }
[ $DOO2_TASK_XIC -eq 1 ] && OPT_COMPARE+=" xic "
[ $DOO2_TASK_JPSI -eq 1 ] && OPT_COMPARE+=" jpsi "
# Jets
[ "$INPUT_IS_MC" -eq 1 ] && SUFFIX_JET="mc" || SUFFIX_JET="data"
[ $DOO2_JET_FIND -eq 1 ] && OPT_COMPARE+=" jets-${SUFFIX_JET} "
[ $DOO2_JET_SUB -eq 1 ] && OPT_COMPARE+=" jets-substructure-${SUFFIX_JET} "
[ "$OPT_COMPARE" ] && POSTEXEC+=" && root -b -q -l \"$DIR_TASKS/Compare.C(\\\"\$FileO2\\\", \\\"\$FileAli\\\", \\\"$OPT_COMPARE\\\", $DORATIO)\""
}
# Plot particle reconstruction efficiencies.
[[ $DOO2 -eq 1 && $INPUT_IS_MC -eq 1 ]] && {
PARTICLES=""
[ $DOO2_TASK_D0 -eq 1 ] && PARTICLES+=" d0 "
[ $DOO2_TASK_DS -eq 1 ] && PARTICLES+=" ds "
[ $DOO2_TASK_DPLUS -eq 1 ] && PARTICLES+=" dplus "
[ $DOO2_TASK_LC -eq 1 ] && PARTICLES+=" lc "
[ $DOO2_TASK_LB -eq 1 ] && PARTICLES+=" lb "
[ $DOO2_TASK_XIC -eq 1 ] && PARTICLES+=" xic "
[ $DOO2_TASK_JPSI -eq 1 ] && PARTICLES+=" jpsi "
[ $DOO2_TASK_LCK0SP -eq 1 ] && PARTICLES+=" lc-tok0sP "
[ $DOO2_TASK_XICC -eq 1 ] && PARTICLES+=" xicc-mc "
[ $DOO2_TASK_B0 -eq 1 ] && PARTICLES+=" b0-mc "
[ $DOO2_TASK_BPLUS -eq 1 ] && PARTICLES+=" bplus "
[ "$PARTICLES" ] && POSTEXEC+=" && root -b -q -l \"$DIR_TASKS/PlotEfficiency.C(\\\"\$FileO2\\\", \\\"$PARTICLES\\\")\""
}
cat << EOF > "$SCRIPT_POSTPROCESS"
#!/bin/bash
FileO2="\$1"
FileAli="\$2"
$POSTEXEC
EOF
}