file testing.log contains the output of the test scripts and sample scripts of running PrecisonProDB in different modes.
file test_running_summary.txt is the summary of the test script outputs.
test scripts looks like
PATH_OF_PRECISIONPRODB=/data/p/xiaolong/PrecisionProDB
python $PATH_OF_PRECISIONPRODB/src/PrecisionProDB_test.py \
-s $PATH_OF_PRECISIONPRODB \
-o /data/p/xiaolong/PrecisionProDB/test_outputthen a combination of many testing runs were performed.
PrecisionProDB will be run with Ensembl, GENCODE, RefSeq, TransDecoder and UniProt gene annotations.
It will use tsv, vcf or a variant string as input.
It will run without building a sqlite file, building a sqlite file during the run or pre-building a sqlite file before running in the sqlite mode.
the outputs were shown in this folder.