@@ -28,308 +28,75 @@ jobs:
2828 sudo apt-get update -y -qq
2929 sudo apt-get -qq -y install curl cmake jq clang g++>=9.3.0
3030
31- name : Compile and run for Z = 1
32- run : |
33- cd unit_test/burn_cell_metal_chem
34- make -j 2
35- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
36-
37- name : Print backtrace
38- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
39- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
40-
41- - name : Compare to stored output for Z = 1
42- run : |
43- set -e
44- cd unit_test/burn_cell_metal_chem
45- line_numbers=(4461 4463 4465 4467 4468 4471 4472 4475 4481 4486)
46- threshold=0.01
47- error_found=false
48- for line_number in "${line_numbers[@]}"; do
49-
50- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
51- # Adjust the line number for reference_solution_1.out
52- reference_line_number=$((line_number - 4460))
53- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1.out)
54-
55- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
56-
57- if (( $(echo "$difference > $threshold" | bc -l) )); then
58- echo "Line number: $line_number"
59- echo "Value in test.out: $value1"
60- echo "Value in reference_solution_1.out: $value2"
61- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
62- echo
63- error_found=true
64- fi
65- done
66- if [[ $error_found == true ]]; then
67- exit 1
68- fi
69-
70- name : Run for Z = 1 at z = 10
71- run : |
72- cd unit_test/burn_cell_metal_chem
73- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1_z10 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
74-
75- name : Print backtrace
76- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
77- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
78-
79- - name : Compare to stored output for Z = 1 at z = 10
80- run : |
81- set -e
82- cd unit_test/burn_cell_metal_chem
83- line_numbers=(1613 1615 4456 4458 4460 4463 4470 4476 4481)
84- threshold=0.01
85- error_found=false
86- for line_number in "${line_numbers[@]}"; do
87-
88- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
89- # Adjust the line number for reference_solution_1_z10.out
90- reference_line_number=$((line_number - 1612))
91- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1_z10.out)
92-
93- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
94-
95- if (( $(echo "$difference > $threshold" | bc -l) )); then
96- echo "Line number: $line_number"
97- echo "Value in test.out: $value1"
98- echo "Value in reference_solution_1_z10.out: $value2"
99- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
100- echo
101- error_found=true
102- fi
103- done
104- if [[ $error_found == true ]]; then
105- exit 1
106- fi
107-
108- name : Run for Z = 1e-1
109- run : |
110- cd unit_test/burn_cell_metal_chem
111- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-1 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
112-
113- name : Print backtrace
114- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
115- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
116-
117- - name : Compare to stored output for Z = 1e-1
118- run : |
119- set -e
120- cd unit_test/burn_cell_metal_chem
121- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
122- threshold=0.01
123- error_found=false
124- for line_number in "${line_numbers[@]}"; do
125-
126- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
127- # Adjust the line number for reference_solution
128- reference_line_number=$((line_number - 4437))
129- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-1.out)
130-
131- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
132-
133- if (( $(echo "$difference > $threshold" | bc -l) )); then
134- echo "Line number: $line_number"
135- echo "Value in test.out: $value1"
136- echo "Value in reference_solution_1e-1.out: $value2"
137- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
138- echo
139- error_found=true
140- fi
141- done
142- if [[ $error_found == true ]]; then
143- exit 1
144- fi
145-
146- name : Run for Z = 1e-2
147- run : |
148- cd unit_test/burn_cell_metal_chem
149- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-2 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
150-
151- name : Print backtrace
152- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
153- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
154-
155- - name : Compare to stored output for Z = 1e-2
156- run : |
157- set -e
158- cd unit_test/burn_cell_metal_chem
159- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
160- threshold=0.01
161- error_found=false
162- for line_number in "${line_numbers[@]}"; do
163-
164- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
165- # Adjust the line number for reference_solution
166- reference_line_number=$((line_number - 4437))
167- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-2.out)
168-
169- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
170-
171- if (( $(echo "$difference > $threshold" | bc -l) )); then
172- echo "Line number: $line_number"
173- echo "Value in test.out: $value1"
174- echo "Value in reference_solution_1e-2.out: $value2"
175- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
176- echo
177- error_found=true
178- fi
179- done
180- if [[ $error_found == true ]]; then
181- exit 1
182- fi
183-
184- name : Run for Z = 1e-3
185- run : |
186- cd unit_test/burn_cell_metal_chem
187- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-3 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
188-
189- name : Print backtrace
190- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
191- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
192-
193- - name : Compare to stored output for Z = 1e-3
31+ name : Run and compare outputs for different Z values
19432 run : |
19533 set -e
19634 cd unit_test/burn_cell_metal_chem
197- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
198- threshold=0.01
199- error_found=false
200- for line_number in "${line_numbers[@]}"; do
20135
202- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
203- # Adjust the line number for reference_solution
204- reference_line_number=$((line_number - 4437))
205- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-3.out)
206-
207- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
208-
209- if (( $(echo "$difference > $threshold" | bc -l) )); then
210- echo "Line number: $line_number"
211- echo "Value in test.out: $value1"
212- echo "Value in reference_solution_1e-3.out: $value2"
213- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
214- echo
215- error_found=true
36+ declare -A line_numbers_map=(
37+ ["Z=1"]="4461 4463 4465 4467 4468 4471 4472 4475 4481 4486"
38+ ["Z=1_z10"]="1613 1615 4456 4458 4460 4463 4470 4476 4481"
39+ ["Z=1e-1"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
40+ ["Z=1e-2"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
41+ ["Z=1e-3"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
42+ ["Z=1e-4"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
43+ ["Z=1e-5"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
44+ ["Z=1e-6"]="4438 4440 4442 4444 4445 4448 4449 4452 4458 4463"
45+ )
46+
47+ declare -A ref_map=(
48+ ["Z=1"]="reference_solution_1.out"
49+ ["Z=1_z10"]="reference_solution_1_z10.out"
50+ ["Z=1e-1"]="reference_solution_1e-1.out"
51+ ["Z=1e-2"]="reference_solution_1e-2.out"
52+ ["Z=1e-3"]="reference_solution_1e-3.out"
53+ ["Z=1e-4"]="reference_solution_1e-4.out"
54+ ["Z=1e-5"]="reference_solution_1e-5.out"
55+ ["Z=1e-6"]="reference_solution_1e-6.out"
56+ )
57+
58+ for Z in "Z=1" "Z=1_z10" "Z=1e-1" "Z=1e-2" "Z=1e-3" "Z=1e-4" "Z=1e-5" "Z=1e-6"; do
59+ input_file="inputs_metal_chem_${Z//Z=/}"
60+ output_file="test_${Z//Z=/}.out"
61+ ./main1d.gnu.DEBUG.ex $input_file amrex.fpe_trap_{invalid,zero,overflow}=1 > $output_file
62+
63+ line_numbers="${line_numbers_map[$Z]}"
64+ ref_file="${ref_map[$Z]}"
65+
66+ error_found=false
67+ for line_number in $line_numbers; do
68+ value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' $output_file)
69+
70+ # Adjust the line number for the reference file
71+ if [[ "$Z" == "Z=1" ]]; then
72+ reference_line_number=$((line_number - 4460))
73+ elif [[ "$Z" == "Z=1_z10" ]]; then
74+ reference_line_number=$((line_number - 1612))
75+ else
76+ reference_line_number=$((line_number - 4437))
77+ fi
78+
79+ value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' $ref_file)
80+
81+ difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
82+
83+ if (( $(echo "$difference > 0.01" | bc -l) )); then
84+ echo "Z: $Z"
85+ echo "Line number: $line_number"
86+ echo "Value in $output_file: $value1"
87+ echo "Value in $ref_file: $value2"
88+ echo "Difference between test and reference value is $difference, more than allowed threshold of 0.01"
89+ echo
90+ error_found=true
91+ fi
92+ done
93+
94+ if [[ $error_found == true ]]; then
95+ exit 1
21696 fi
21797 done
218- if [[ $error_found == true ]]; then
219- exit 1
220- fi
221-
222- name : Run for Z = 1e-4
223- run : |
224- cd unit_test/burn_cell_metal_chem
225- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-4 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
22698
227- name : Print backtrace
99+ name : Print backtrace if any failure
228100 if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
229101 run : cat unit_test/burn_cell_metal_chem/Backtrace.0
230102
231- - name : Compare to stored output for Z = 1e-4
232- run : |
233- set -e
234- cd unit_test/burn_cell_metal_chem
235- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
236- threshold=0.01
237- error_found=false
238- for line_number in "${line_numbers[@]}"; do
239-
240- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
241- # Adjust the line number for reference_solution
242- reference_line_number=$((line_number - 4437))
243- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-4.out)
244-
245- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
246-
247- if (( $(echo "$difference > $threshold" | bc -l) )); then
248- echo "Line number: $line_number"
249- echo "Value in test.out: $value1"
250- echo "Value in reference_solution_1e-4.out: $value2"
251- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
252- echo
253- error_found=true
254- fi
255- done
256- if [[ $error_found == true ]]; then
257- exit 1
258- fi
259-
260- name : Run for Z = 1e-5
261- run : |
262- cd unit_test/burn_cell_metal_chem
263- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-5 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
264-
265- name : Print backtrace
266- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
267- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
268-
269- - name : Compare to stored output for Z = 1e-5
270- run : |
271- set -e
272- cd unit_test/burn_cell_metal_chem
273- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
274- threshold=0.01
275- error_found=false
276- for line_number in "${line_numbers[@]}"; do
277-
278- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
279- # Adjust the line number for reference_solution
280- reference_line_number=$((line_number - 4437))
281- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-5.out)
282-
283- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
284-
285- if (( $(echo "$difference > $threshold" | bc -l) )); then
286- echo "Line number: $line_number"
287- echo "Value in test.out: $value1"
288- echo "Value in reference_solution_1e-5.out: $value2"
289- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
290- echo
291- error_found=true
292- fi
293- done
294- if [[ $error_found == true ]]; then
295- exit 1
296- fi
297-
298- name : Run for Z = 1e-6
299- run : |
300- cd unit_test/burn_cell_metal_chem
301- ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-6 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
302-
303- name : Print backtrace
304- if : ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
305- run : cat unit_test/burn_cell_metal_chem/Backtrace.0
306-
307- - name : Compare to stored output for Z = 1e-6
308- run : |
309- set -e
310- cd unit_test/burn_cell_metal_chem
311- line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
312- threshold=0.01
313- error_found=false
314- for line_number in "${line_numbers[@]}"; do
315-
316- value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
317- # Adjust the line number for reference_solution
318- reference_line_number=$((line_number - 4437))
319- value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-6.out)
320-
321- difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
322-
323- if (( $(echo "$difference > $threshold" | bc -l) )); then
324- echo "Line number: $line_number"
325- echo "Value in test.out: $value1"
326- echo "Value in reference_solution_1e-6.out: $value2"
327- echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
328- echo
329- error_found=true
330- fi
331- done
332- if [[ $error_found == true ]]; then
333- exit 1
334- fi
335-
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