more amrex namespace removal

Author: zingale

EOS/multigamma/eos_composition.H

@@ -5,7 +5,7 @@
 #include <network.H>
 #include <eos_type.H>
 
-using namespace amrex;
+using namespace amrex::literals;
 
 struct eos_xderivs_t {
   Real dedX[NumSpec];

EOS/ztwd/actual_eos.H

@@ -23,7 +23,7 @@
 #include <fundamental_constants.H>
 #include <eos_type.H>
 
-using namespace amrex;
+using namespace amrex::literals;
 
 const std::string eos_name = "ztwd";
 

conductivity/stellar/actual_conductivity.H

@@ -8,7 +8,7 @@
 
 const std::string cond_name = "stellar";
 
-using namespace amrex;
+using namespace amrex::literals;
 
 AMREX_FORCE_INLINE
 void
@@ -50,86 +50,86 @@ actual_conductivity (T& state)
     // iec  = 4*e**4*me/(3*pi*hbar**3)
     // xec  = hbar/kerg*e*sqrt(4*pi/me)
 
-  const Real third  = 1.0_rt/3.0_rt;
-  const Real twoth  = 2.0_rt * third;
+  const amrex::Real third  = 1.0_rt/3.0_rt;
+  const amrex::Real twoth  = 2.0_rt * third;
 
-  const Real zbound = 0.1e0_rt;
-  const Real t7peek = 1.0e20_rt;
-  const Real k2c    = 4.0_rt/3.0_rt*C::a_rad*C::c_light;
-  const Real meff   = 1.194648642401440e-10_rt;
-  const Real weid   = 6.884326138694269e-5_rt;
-  const Real iec    = 1.754582332329132e16_rt;
-  const Real xec    = 4.309054377592449e-7_rt;
-  const Real rt3    = 1.7320508075688772e0_rt;
-  const Real con2   = 1.07726359439811217e-7_rt;
+  const amrex::Real zbound = 0.1e0_rt;
+  const amrex::Real t7peek = 1.0e20_rt;
+  const amrex::Real k2c    = 4.0_rt/3.0_rt*C::a_rad*C::c_light;
+  const amrex::Real meff   = 1.194648642401440e-10_rt;
+  const amrex::Real weid   = 6.884326138694269e-5_rt;
+  const amrex::Real iec    = 1.754582332329132e16_rt;
+  const amrex::Real xec    = 4.309054377592449e-7_rt;
+  const amrex::Real rt3    = 1.7320508075688772e0_rt;
+  const amrex::Real con2   = 1.07726359439811217e-7_rt;
 
   // switches for the iben & christy regimes
-  const Real t6_switch1 = 0.5_rt;
-  const Real t6_switch2 = 0.9_rt;
+  const amrex::Real t6_switch1 = 0.5_rt;
+  const amrex::Real t6_switch2 = 0.9_rt;
 
   // initialize
-  Real opac      = 0.0e0_rt;
-  Real orad      = 0.0e0_rt;
-  Real ocond     = 0.0e0_rt;
-  Real oiben1    = 0.0e0_rt;
-  Real oiben2    = 0.0e0_rt;
-  Real ochrs     = 0.0e0_rt;
-  Real oh        = 0.0e0_rt;
-  Real ov        = 0.0e0_rt;
-  Real zbar      = 0.0e0_rt;
-  Real ytot1     = 0.0e0_rt;
+  amrex::Real opac      = 0.0e0_rt;
+  amrex::Real orad      = 0.0e0_rt;
+  amrex::Real ocond     = 0.0e0_rt;
+  amrex::Real oiben1    = 0.0e0_rt;
+  amrex::Real oiben2    = 0.0e0_rt;
+  amrex::Real ochrs     = 0.0e0_rt;
+  amrex::Real oh        = 0.0e0_rt;
+  amrex::Real ov        = 0.0e0_rt;
+  amrex::Real zbar      = 0.0e0_rt;
+  amrex::Real ytot1     = 0.0e0_rt;
 
   // set the composition variables
-  Real w[6];
+  amrex::Real w[6];
   for (int i = 0; i < 6; i++) {
     w[i] = 0.0e0_rt;
   }
 
   // the idea here is that w[0] is H, w[1] is He, and w[2] is metals
   for (int i = 0; i < NumSpec; i++) {
     int iz = amrex::min(3, amrex::max(1, static_cast<int>(zion[i]))) - 1;
-    Real ymass = state.xn[i]*aion_inv[i];
+    amrex::Real ymass = state.xn[i]*aion_inv[i];
     w[iz] += state.xn[i];
     w[iz+3] += zion[i] * zion[i] * ymass;
     zbar += zion[i] * ymass;
     ytot1 += ymass;
   }
-  Real abar = 1.0e0_rt/ytot1;
+  amrex::Real abar = 1.0e0_rt/ytot1;
   zbar = zbar * abar;
-  Real t6 = state.T * 1.0e-6_rt;
+  amrex::Real t6 = state.T * 1.0e-6_rt;
 
-  Real xh = w[0];
-  Real xhe = w[1];
-  Real xz = w[2];
+  amrex::Real xh = w[0];
+  amrex::Real xhe = w[1];
+  amrex::Real xz = w[2];
 
   // radiative section:
   // from iben apj 196 525 1975
   if (xh < 1.0e-5_rt) {
-    Real xmu = amrex::max(1.0e-99_rt, w[3] + w[4] + w[5] - 1.0e0_rt);
-    Real xkc = std::pow((2.019e-4_rt * state.rho / std::pow(t6, 1.7_rt)), 2.425_rt);
-    Real xkap = 1.0_rt + xkc * (1.0_rt + xkc/24.55_rt);
-    Real xkb = 3.86_rt + 0.252_rt*std::sqrt(xmu) + 0.018_rt*xmu;
-    Real xka = 3.437_rt * (1.25_rt + 0.488_rt*std::sqrt(xmu) + 0.092_rt*xmu);
-    Real dbar = std::exp(-xka + xkb*std::log(t6));
+    amrex::Real xmu = amrex::max(1.0e-99_rt, w[3] + w[4] + w[5] - 1.0e0_rt);
+    amrex::Real xkc = std::pow((2.019e-4_rt * state.rho / std::pow(t6, 1.7_rt)), 2.425_rt);
+    amrex::Real xkap = 1.0_rt + xkc * (1.0_rt + xkc/24.55_rt);
+    amrex::Real xkb = 3.86_rt + 0.252_rt*std::sqrt(xmu) + 0.018_rt*xmu;
+    amrex::Real xka = 3.437_rt * (1.25_rt + 0.488_rt*std::sqrt(xmu) + 0.092_rt*xmu);
+    amrex::Real dbar = std::exp(-xka + xkb*std::log(t6));
     oiben1 = xkap * std::pow(state.rho/dbar, 0.67_rt);
   }
 
   if ( !((xh >=  1.0e-5_rt) && (t6 < t6_switch1)) &&
        !((xh < 1.0e-5_rt) && (xz > zbound)) ) {
-    Real d0log;
+    amrex::Real d0log;
     if (t6 > t6_switch1) {
       d0log = -(3.868_rt + 0.806_rt*xh) + 1.8_rt*std::log(t6);
     } else {
       d0log = -(3.868_rt + 0.806_rt*xh) + (3.42_rt - 0.52_rt*xh)*std::log(t6);
     }
-    Real xka1 = 2.809_rt * std::exp(-(1.74_rt  - 0.755_rt*xh)
+    amrex::Real xka1 = 2.809_rt * std::exp(-(1.74_rt  - 0.755_rt*xh)
                                     * amrex::Math::powi<2>(std::log10(t6) - 0.22_rt + 0.1375_rt*xh));
 
-   Real xkw = 4.05_rt * std::exp(-(0.306_rt  - 0.04125_rt*xh)
+   amrex::Real xkw = 4.05_rt * std::exp(-(0.306_rt  - 0.04125_rt*xh)
                                  * amrex::Math::powi<2>(std::log10(t6) - 0.18_rt + 0.1625_rt*xh));
-   Real xkaz = 50.0_rt*xz*xka1 * std::exp(-0.5206_rt*amrex::Math::powi<2>((std::log(state.rho)-d0log)/xkw));
-   Real dbar2log = -(4.283_rt + 0.7196_rt*xh) + 3.86_rt*std::log(t6);
-   Real dbar1log = -5.296_rt + 4.833_rt*std::log(t6);
+   amrex::Real xkaz = 50.0_rt*xz*xka1 * std::exp(-0.5206_rt*amrex::Math::powi<2>((std::log(state.rho)-d0log)/xkw));
+   amrex::Real dbar2log = -(4.283_rt + 0.7196_rt*xh) + 3.86_rt*std::log(t6);
+   amrex::Real dbar1log = -5.296_rt + 4.833_rt*std::log(t6);
    if (dbar2log < dbar1log) {
      dbar1log = dbar2log;
    }
@@ -138,20 +138,20 @@ actual_conductivity (T& state)
 
   // from christy apj 144 108 1966
   if ((t6 < t6_switch2) && (xh >= 1.0e-5_rt)) {
-    Real t4 = state.T * 1.0e-4_rt;
-    Real t4r = std::sqrt(t4);
-    Real t44 = t4*t4*t4*t4;
-    Real t45 = t44 * t4;
-    Real t46 = t45 * t4;
-    Real ck1 = 2.0e6_rt/t44 + 2.1_rt*t46;
-    Real ck3 = 4.0e-3_rt/t44 + 2.0e-4_rt/std::pow(state.rho, 0.25_rt);
-    Real ck2 = 4.5_rt*t46 + 1.0_rt/(t4*ck3);
-    Real ck4 = 1.4e3_rt*t4 + t46;
-    Real ck5 = 1.0e6_rt + 0.1_rt*t46;
-    Real ck6 = 20.0_rt*t4 + 5.0_rt*t44 + t45;
-    Real xkcx = xh*(t4r/ck1 + 1.0_rt/ck2);
-    Real xkcy = xhe*(1.0_rt/ck4 + 1.5_rt/ck5);
-    Real xkcz = xz*(t4r/ck6);
+    amrex::Real t4 = state.T * 1.0e-4_rt;
+    amrex::Real t4r = std::sqrt(t4);
+    amrex::Real t44 = t4*t4*t4*t4;
+    amrex::Real t45 = t44 * t4;
+    amrex::Real t46 = t45 * t4;
+    amrex::Real ck1 = 2.0e6_rt/t44 + 2.1_rt*t46;
+    amrex::Real ck3 = 4.0e-3_rt/t44 + 2.0e-4_rt/std::pow(state.rho, 0.25_rt);
+    amrex::Real ck2 = 4.5_rt*t46 + 1.0_rt/(t4*ck3);
+    amrex::Real ck4 = 1.4e3_rt*t4 + t46;
+    amrex::Real ck5 = 1.0e6_rt + 0.1_rt*t46;
+    amrex::Real ck6 = 20.0_rt*t4 + 5.0_rt*t44 + t45;
+    amrex::Real xkcx = xh*(t4r/ck1 + 1.0_rt/ck2);
+    amrex::Real xkcy = xhe*(1.0_rt/ck4 + 1.5_rt/ck5);
+    amrex::Real xkcz = xz*(t4r/ck6);
     ochrs = state.pele * (xkcx + xkcy + xkcz);
   }
 
@@ -175,30 +175,30 @@ actual_conductivity (T& state)
   }
 
   // add in the compton scattering opacity, weaver et al. apj 1978 225 1021
-  Real th = amrex::min(511.0_rt, state.T * 8.617e-8_rt);
-  Real fact = 1.0_rt + 2.75e-2_rt*th - 4.88e-5_rt*th*th;
-  Real facetax = 1.0e100_rt;
+  amrex::Real th = amrex::min(511.0_rt, state.T * 8.617e-8_rt);
+  amrex::Real fact = 1.0_rt + 2.75e-2_rt*th - 4.88e-5_rt*th*th;
+  amrex::Real facetax = 1.0e100_rt;
   if (state.eta <= 500.0_rt) {
     facetax = std::exp(0.522e0_rt*state.eta - 1.563_rt);
   }
-  Real faceta  = 1.0_rt + facetax;
-  Real ocompt = 6.65205e-25_rt/(fact * faceta) * state.xne/state.rho;
+  amrex::Real faceta  = 1.0_rt + facetax;
+  amrex::Real ocompt = 6.65205e-25_rt/(fact * faceta) * state.xne/state.rho;
   orad += ocompt;
 
   // cutoff radiative opacity when 4kt/hbar is less than the plasma
   // frequency
-  Real tcut = con2 * std::sqrt(state.xne);
+  amrex::Real tcut = con2 * std::sqrt(state.xne);
   if (state.T < tcut) {
     if (tcut > 200.0_rt*state.T) {
       orad = orad * 2.658e86_rt;
     } else {
-      Real cutfac = std::exp(tcut/state.T - 1.0_rt);
+      amrex::Real cutfac = std::exp(tcut/state.T - 1.0_rt);
       orad = orad * cutfac;
     }
   }
 
   // fudge molecular opacity for low temps
-  Real xkf = t7peek * state.rho * amrex::Math::powi<4>(state.T * 1.0e-7_rt);
+  amrex::Real xkf = t7peek * state.rho * amrex::Math::powi<4>(state.T * 1.0e-7_rt);
   orad = xkf * orad/(xkf + orad);
 
 
@@ -209,31 +209,31 @@ actual_conductivity (T& state)
   // drelim, use the non-degenerate formulas. in between drel and drelim,
   // apply a smooth blending of the two.
 
-  Real dlog10 = std::log10(state.rho);
+  amrex::Real dlog10 = std::log10(state.rho);
 
-  Real drel = 2.4e-7_rt * zbar/abar * state.T * std::sqrt(state.T);
+  amrex::Real drel = 2.4e-7_rt * zbar/abar * state.T * std::sqrt(state.T);
   if (state.T <= 1.0e5_rt) {
     drel = drel * 15.0_rt;
   }
-  Real drel10 = std::log10(drel);
-  Real drelim = drel10 + 1.0_rt;
+  amrex::Real drel10 = std::log10(drel);
+  amrex::Real drelim = drel10 + 1.0_rt;
 
   // from iben apj 196 525 1975 for non-degenerate regimes
   if (dlog10 < drelim) {
-    Real zdel = state.xne/(C::n_A*t6*std::sqrt(t6));
-    Real zdell10 = std::log10(zdel);
-    Real eta0 = std::exp(-1.20322_rt + twoth * std::log(zdel));
-    Real eta02 = eta0*eta0;
+    amrex::Real zdel = state.xne/(C::n_A*t6*std::sqrt(t6));
+    amrex::Real zdell10 = std::log10(zdel);
+    amrex::Real eta0 = std::exp(-1.20322_rt + twoth * std::log(zdel));
+    amrex::Real eta02 = eta0*eta0;
 
     // thpl factor
-    Real thpl;
+    amrex::Real thpl;
     if (zdell10 < 0.645_rt) {
       thpl = -7.5668_rt + std::log(zdel * (1.0_rt + 0.024417_rt*zdel));
     } else {
       if (zdell10 < 2.5_rt) {
         thpl = -7.58110_rt + std::log(zdel*(1.0_rt + 0.02804_rt*zdel));
         if (zdell10 >= 2.0_rt) {
-          Real thpla = thpl;
+          amrex::Real thpla = thpl;
           thpl = -11.0742_rt + std::log(zdel*zdel * (1.0_rt + 9.376_rt/eta02));
           thpl = 2.0_rt*((2.5_rt-zdell10)*thpla + (zdell10-2.0_rt)*thpl);
         }
@@ -243,33 +243,33 @@ actual_conductivity (T& state)
     }
 
     // pefac and walf factors
-    Real pefac;
+    amrex::Real pefac;
     if (zdell10 < 2.0_rt) {
       pefac = 1.0_rt + 0.021876_rt*zdel;
       if (zdell10 > 1.5_rt) {
-        Real pefacal = std::log(pefac);
-        Real pefacl = std::log(0.4_rt * eta0 + 1.64496_rt/eta0);
-        Real cfac1 = 2.0_rt - zdell10;
-        Real cfac2 = zdell10 - 1.5_rt;
+        amrex::Real pefacal = std::log(pefac);
+        amrex::Real pefacl = std::log(0.4_rt * eta0 + 1.64496_rt/eta0);
+        amrex::Real cfac1 = 2.0_rt - zdell10;
+        amrex::Real cfac2 = zdell10 - 1.5_rt;
         pefac = std::exp(2.0_rt * (cfac1*pefacal + cfac2*pefacl));
       }
     } else {
       pefac = 0.4_rt * eta0 + 1.64496_rt/eta0;
     }
 
-    Real dnefac;
+    amrex::Real dnefac;
     if (zdel < 40.0_rt) {
       dnefac = 1.0_rt + zdel * (3.4838e-4_rt * zdel - 2.8966e-2_rt);
     } else {
       dnefac = 1.5_rt/eta0 * (1.0_rt - 0.8225_rt/eta02);
     }
-    Real wpar2 = 9.24735e-3_rt * zdel *
+    amrex::Real wpar2 = 9.24735e-3_rt * zdel *
       (state.rho*C::n_A*(w[3]+w[4]+w[5])/state.xne + dnefac)/(std::sqrt(t6)*pefac);
-    Real walf = 0.5_rt * std::log(wpar2);
-    Real walf10 = 0.5_rt * std::log10(wpar2);
+    amrex::Real walf = 0.5_rt * std::log(wpar2);
+    amrex::Real walf10 = 0.5_rt * std::log10(wpar2);
 
     // thx, thy and thc factors
-    Real thx;
+    amrex::Real thx;
     if (walf10 <= -3.0_rt) {
       thx = std::exp(2.413_rt - 0.124_rt*walf);
     } else if (walf10 <= -1.0_rt) {
@@ -278,7 +278,7 @@ actual_conductivity (T& state)
       thx = std::exp(0.426_rt - 0.558_rt*walf);
     }
 
-    Real thy;
+    amrex::Real thy;
     if (walf10 <= -3.0_rt) {
       thy = std::exp(2.158_rt - 0.111_rt*walf);
     } else if (walf10 <= 0.0_rt) {
@@ -287,7 +287,7 @@ actual_conductivity (T& state)
       thy = std::exp(0.553_rt - 0.6_rt*walf);
     }
 
-    Real thc;
+    amrex::Real thc;
     if (walf10 <= -2.5_rt) {
       thc = std::exp(2.924_rt - 0.1_rt*walf);
     } else if (walf10 <= 0.5_rt) {
@@ -302,41 +302,41 @@ actual_conductivity (T& state)
   // from yakovlev & urpin soviet astro 1980 24 303 and
   // potekhin et al. 1997 aa 323 415 for degenerate regimes
   if (dlog10 > drel10) {
-    Real xmas = meff * std::pow(state.xne, third);
-    Real ymas = std::sqrt(1.0_rt + xmas*xmas);
-    Real wfac = weid * state.T/ymas * state.xne;
-    Real cint = 1.0_rt;
+    amrex::Real xmas = meff * std::pow(state.xne, third);
+    amrex::Real ymas = std::sqrt(1.0_rt + xmas*xmas);
+    amrex::Real wfac = weid * state.T/ymas * state.xne;
+    amrex::Real cint = 1.0_rt;
 
     // ion-electron collision frequency and the thermal conductivity
-    Real vie = iec * zbar * ymas * cint;
-    Real cie = wfac/vie;
+    amrex::Real vie = iec * zbar * ymas * cint;
+    amrex::Real cie = wfac/vie;
 
     // electron-electron collision frequency and thermal conductivity
-    Real tpe = xec * std::sqrt(state.xne/ymas);
-    Real yg = rt3 * tpe/state.T;
-    Real xrel = 1.009_rt * std::pow(zbar/abar * state.rho * 1.0e-6_rt, third);
-    Real beta2 = xrel*xrel/(1.0_rt + xrel*xrel);
-    Real jy = (1.0_rt + 6.0_rt/(5.0_rt*xrel*xrel) + 2.0_rt/(5.0_rt*xrel*xrel*xrel*xrel))
+    amrex::Real tpe = xec * std::sqrt(state.xne/ymas);
+    amrex::Real yg = rt3 * tpe/state.T;
+    amrex::Real xrel = 1.009_rt * std::pow(zbar/abar * state.rho * 1.0e-6_rt, third);
+    amrex::Real beta2 = xrel*xrel/(1.0_rt + xrel*xrel);
+    amrex::Real jy = (1.0_rt + 6.0_rt/(5.0_rt*xrel*xrel) + 2.0_rt/(5.0_rt*xrel*xrel*xrel*xrel))
       * ( yg*yg*yg / (3.0_rt * amrex::Math::powi<3>(1.0_rt + 0.07414_rt * yg))
           * std::log((2.81_rt - 0.810_rt*beta2 + yg)/yg)
           + std::pow(M_PI, 5/6.0_rt) * amrex::Math::powi<4>(yg/(13.91_rt + yg)));
-    Real vee = 0.511_rt * state.T*state.T * xmas/(ymas*ymas) * std::sqrt(xmas/ymas) * jy;
-    Real cee = wfac/vee;
+    amrex::Real vee = 0.511_rt * state.T*state.T * xmas/(ymas*ymas) * std::sqrt(xmas/ymas) * jy;
+    amrex::Real cee = wfac/vee;
 
     // total electron thermal conductivity and conversion to an opacity
-    Real ov1 = cie * cee/(cee + cie);
+    amrex::Real ov1 = cie * cee/(cee + cie);
     ov = k2c/(ov1*state.rho) * state.T*state.T*state.T;
   }
 
   // blend the opacities in the intermediate region
   if (dlog10 <= drel10) {
     ocond = oh;
   } else if (dlog10 > drel10 && dlog10 < drelim) {
-    Real x = state.rho;
-    Real x1 = std::pow(10.0_rt, drel10);
-    Real x2 = std::pow(10.0_rt, drelim);
-    Real alfa = (x-x2)/(x1-x2);
-    Real beta = (x-x1)/(x2-x1);
+    amrex::Real x = state.rho;
+    amrex::Real x1 = std::pow(10.0_rt, drel10);
+    amrex::Real x2 = std::pow(10.0_rt, drelim);
+    amrex::Real alfa = (x-x2)/(x1-x2);
+    amrex::Real beta = (x-x1)/(x2-x1);
     ocond = alfa*oh + beta*ov;
   } else if (dlog10 >= drelim) {
     ocond = ov;