genome_1.ipynb

{
  "nbformat": 4,
  "nbformat_minor": 0,
  "metadata": {
    "colab": {
      "name": "genome_1.ipynb",
      "provenance": [],
      "collapsed_sections": []
    },
    "kernelspec": {
      "name": "python3",
      "display_name": "Python 3"
    }
  },
  "cells": [
    {
      "cell_type": "code",
      "metadata": {
        "id": "BRGDlfeMqAhU",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "56b637a6-7c7b-4eb9-ab96-857842687a64"
      },
      "source": [
        "!curl -o datasets 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/datasets' "
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n",
            "                                 Dload  Upload   Total   Spent    Left  Speed\n",
            "100 10.9M  100 10.9M    0     0  16.5M      0 --:--:-- --:--:-- --:--:-- 16.5M\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "ioUoWdVbrAfc",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "624e0e55-7588-470e-a012-99868497c67a"
      },
      "source": [
        "!curl -o dataformat 'https://ftp.ncbi.nlm.nih.gov/pub/datasets/command-line/LATEST/linux-amd64/dataformat' "
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n",
            "                                 Dload  Upload   Total   Spent    Left  Speed\n",
            "100 10.4M  100 10.4M    0     0  16.4M      0 --:--:-- --:--:-- --:--:-- 16.3M\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "za4st5i8rHiI"
      },
      "source": [
        "!chmod +x datasets"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "JVieZAzjrL-o",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "1be899c5-3864-4711-933b-8bf1138bccd1"
      },
      "source": [
        "!./datasets --help"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "datasets 10.9.0\n",
            "\n",
            "datasets is a command-line tool that is used to query and download biological sequence data\n",
            "across all domains of life from NCBI databases.\n",
            "\t \n",
            "https://www.ncbi.nlm.nih.gov/datasets/docs/command-line-start/\n",
            "\n",
            "Usage:\n",
            "  datasets [command]\n",
            "\n",
            "Available Commands:\n",
            "  download             download a gene, genome or coronavirus dataset as a zip file\n",
            "  help                 Help about any command\n",
            "  rehydrate            rehydrate a downloaded, dehydrated dataset\n",
            "  summary              print a summary of a gene or genome dataset\n",
            "  version              print the version of this client and exit\n",
            "\n",
            "Flags:\n",
            "  -h, --help   help for datasets\n",
            "\n",
            "Use \"datasets [command] --help\" for more information about a command.\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "W3t-DmuHrPJR",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "66730253-5f0e-4ff5-be19-071853b20437"
      },
      "source": [
        "!./datasets version"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "10.9.0\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "ppGy2eerrR9Q",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "18d90f63-750b-435c-83bd-293a08c42480"
      },
      "source": [
        "!./datasets download virus genome taxon SARS-CoV-2 --filename SARS2-all.zip"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "\u001b[1;30;43mStreaming output truncated to the last 5000 lines.\u001b[0m\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.67GB 2.06MB/s\n",
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            "\u001b[1A\u001b[2KDownloading: SARS2-all.zip    1.68GB done\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "S45Ee0ntrWAo"
      },
      "source": [
        "corona=\"\"\" gatttaagtg aatagcttgg ctatctcact tcccctcgtt ctcttgcaga actttgattt\n",
        "        taacgaactt aaataaaagc cctgttgttt agcgtattgt tgcacttgtc tggtgggatt\n",
        "       gtggcattaa tttgcctgct catctaggca gtggacatat gctcaacact gggtataatt\n",
        "      181 ctaattgaat actatttttc agttagagcg tcgtgtctct tgtacgtctc ggtcacaata\n",
        "      241 cacggtttcg tccggtgcgt ggcaattcgg ggcacatcat gtctttcgtg gctggtgtga\n",
        "      301 ccgcgcaagg tgcgcgcggt acgtatcgag cagcgctcaa ctctgaaaaa catcaagacc\n",
        "      361 atgtgtctct aactgtgcca ctctgtggtt caggaaacct ggttgaaaaa ctttcaccat\n",
        "      421 ggttcatgga tggcgaaaat gcctatgaag tggtgaaggc catgttactt aaaaaggagc\n",
        "      481 cacttctcta tgtgcccatc cggctggctg gacacactag acacctccca ggtcctcgtg\n",
        "      541 tatacctggt tgagaggctc attgcttgtg aaaatccatt catggttaac caattggctt\n",
        "      601 atagctctag tgcaaatggc agcttggttg gcacaatttt gcagggcaag cctattggta\n",
        "      661 tgttcttccc ttatgacatc gaacttgtca caggaaagca aaatattctc ctgcgcaagt\n",
        "      721 atggccgtgg tggttaccac tacaccccat tccactatga gcgagacaac acctcttgcc\n",
        "      781 ctgagtggat ggacgatttt gaggcggatc ctaaaggcaa atatgcccag aatctgctta\n",
        "      841 agaagttgat tggcggtgat gtcactccag ttgaccaata catgtgtggc gttgatggaa\n",
        "      901 aacccattag tgcctacgca tttttaatgg ccaaggatgg aataaccaaa ctggctgatg\n",
        "      961 ttgaagcgga cgtcgcagca cgtgctgatg acgaaggctt catcacatta aagaacaatc\n",
        "     1021 tatatagatt ggtttggcat gttgagcgta aagacgttcc atatcctaag caatctattt\n",
        "     1081 ttactattaa tagtgtggtc caaaaggatg gtgttgaaaa cactcctcct cactatttta\n",
        "     1141 ctcttggatg caaaatttta acgctcaccc cacgcaacaa gtggagtggc gtttctgact\n",
        "     1201 tgtccctcaa acaaaaactc ctttacacct tctatggtaa ggagtcactt gagaacccaa\n",
        "     1261 cctacattta ccactccgca ttcattgagt gtggaagttg tggtaatgat tcctggctta\n",
        "     1321 cagggaatgc tatccaaggg tttgcctgtg gatgtggggc atcatataca gctaatgatg\n",
        "     1381 tcgaagtcca atcatctggc atgattaagc caaatgctct tctttgtgct acttgcccct\n",
        "     1441 ttgctaaggg tgatagctgt tcttctaatt gcaaacattc agttgctcag ttggttagtt\n",
        "     1501 acctttctga acgttgtaat gttattgctg attctaagtc cttcacactt atctttggtg\n",
        "     1561 gcgtagctta cgcctacttt ggatgtgagg aaggtactat gtactttgtg cctagagcta\n",
        "     1621 agtctgttgt ctcaaggatt ggagactcca tctttacagg ctgtactggc tcttggaaca\n",
        "     1681 aggtcactca aattgctaac atgttcttgg aacagactca gcattccctt aactttgtgg\n",
        "     1741 gagagttcgt tgtcaacgat gttgtcctcg caattctctc tggaaccaca actaatgttg\n",
        "     1801 acaaaatacg ccagcttctc aaaggtgtca cccttgacaa gttgcgtgat tatttagctg\n",
        "     1861 actatgacgt agcagtcact gccggcccat tcatggataa tgctattaat gttggtggta\n",
        "     1921 caggattaca gtatgccgcc attactgcac cttatgtagt tctcactggc ttaggtgagt\n",
        "     1981 cctttaagaa agttgcaacc ataccgtaca aggtttgcaa ctctgttaag gatactctga\n",
        "     2041 cttattatgc tcacagcgtg ttgtacagag tttttcctta tgacatggat tctggtgtgt\n",
        "     2101 catcctttag tgaactactt tttgattgcg ttgatctttc agtagcttct acctattttt\n",
        "     2161 tagtccgcct cttgcaagat aagactggcg actttatgtc tacaattatt acttcctgcc\n",
        "     2221 aaactgctgt tagtaagctt ctagatacat gttttgaagc tacagaagca acatttaact\n",
        "     2281 tcttgttaga tttggcagga ttgttcagaa tctttcttcg caatgcctat gtgtacactt\n",
        "     2341 cacaagggtt tgtggtggtc aatggcaaag tttctacact tgtcaaacaa gtgttagact\n",
        "     2401 tgcttaataa gggtatgcaa cttttgcata caaaggtctc ctgggctggt tctaatatca\n",
        "     2461 gtgctgttat ctacagcggc agggagtctt taatattccc atcgggaacc tattactgtg\n",
        "     2521 tcaccactaa ggctaagtcc gttcaacaag atcttgacgt tattttgcct ggtgagtttt\n",
        "     2581 ccaagaagca gttaggactg ctccaaccta ctgacaattc tacaactgtt agtgttactg\n",
        "     2641 tatccagtaa catggttgaa actgttgtgg gtcaacttga gcaaactaat atgcatagtc\n",
        "     2701 ctgatgttat agtaggtgac tatgtcatta ttagtgaaaa attgtttgtg cgtagtaagg\n",
        "     2761 aagaagacgg atttgccttc taccctgctt gcactaatgg tcatgctgta ccgactctct\n",
        "     2821 ttagacttaa gggaggtgca cctgtaaaaa aagtagcctt tggcggtgat caagtacatg\n",
        "     2881 aggttgctgc tgtaagaagt gttactgtcg agtacaacat tcatgctgta ttagacacac\n",
        "     2941 tacttgcttc ttctagtctt agaacctttg ttgtagataa gtctttgtca attgaggagt\n",
        "     3001 ttgctgacgt agtaaaggaa caagtctcag acttgcttgt taaattactg cgtggaatgc\n",
        "     3061 cgattccaga ttttgattta gacgatttta ttgacgcacc atgctattgc tttaacgctg\n",
        "     3121 agggtgatgc atcttggtct tctactatga tcttctctct tcaccccgtc gagtgtgacg\n",
        "     3181 aggagtgttc tgaagtagag gcttcagatt tagaagaagg tgaatcagag tgcatttctg\n",
        "     3241 agacttcaac tgaacaagtt gacgtttctc atgagatttc tgacgacgag tgggctgctg\n",
        "     3301 cagttgatga agcgttccct ctcgatgaag cagaagatgt tactgaatct gtgcaagaag\n",
        "     3361 aagcacaacc agtagaagta cctgttgaag atattgcgca ggttgtcata gctgacacct\n",
        "     3421 tacaggaaac tcctgttgtg tctgatactg ttgaagtccc accgcaagtg gtgaaacttc\n",
        "     3481 cgtctgaacc tcagactatc cagcccgagg taaaagaagt tgcacctgtc tatgaggctg\n",
        "     3541 ataccgaaca gacacagagt gttactgtta aacctaagag gttacgcaaa aagcgtaatg\n",
        "     3601 ttgacccttt gtccaatttt gaacataagg ttattacaga gtgcgttacc atagttttag\n",
        "     3661 gtgacgcaat tcaagtagcc aagtgctatg gtgagtctgt gttagttaat gctgctaaca\n",
        "     3721 cacatcttaa gcatggcggt ggtatcgctg gtgctattaa tgcggcttca aaaggggctg\n",
        "     3781 tccaaaaaga gtcagatgag tatattctgg ctaaagggcc gttacaagta ggagattcag\n",
        "     3841 ttctcttgca aggccattct ctagctaaga atatcctgca tgtcgtaggc ccagatgccc\n",
        "     3901 gcgctaaaca ggatgtttct ctccttagta agtgctataa ggctatgaat gcatatcctc\n",
        "     3961 ttgtagtcac tcctcttgtt tcagcaggca tatttggtgt aaaaccagct gtgtcttttg\n",
        "     4021 attatcttat tagagaggct aagactagag ttttagtcgt cgttaattcc caagatgtct\n",
        "     4081 ataagagtct taccatagtt gacattccac agagtttgac tttttcatat gatgggttac\n",
        "     4141 gtggcgcaat acgtaaagct aaagattatg gttttactgt ttttgtgtgc acagacaact\n",
        "     4201 ctgctaacac taaagttctt aggaacaagg gtgttgatta tactaagaag tttcttacag\n",
        "     4261 ttgacggtgt gcaatattat tgctacacgt ctaaggacac tttagatgat atcttacaac\n",
        "     4321 aggctaataa gtctgttggt attatatcta tgcctttggg atatgtgtct catggtttag\n",
        "     4381 acttaattca agcagggagt gtcgtgcgta gagttaacgt gccctacgtg tgtctcctag\n",
        "     4441 ctaataaaga gcaagaagct attttgatgt ctgaagacgt taagttaaac ccttcagaag\n",
        "     4501 attttataaa gcacgtccgc actaatggtg gttacaattc ttggcattta gtcgagggtg\n",
        "     4561 aactattggt gcaagactta cgcttaaata agctcctgca ttggtctgat caaaccatat\n",
        "     4621 gctacaagga tagtgtgttt tatgttgtaa agaatagtac agcttttcca tttgaaacac\n",
        "     4681 tttcagcatg tcgtgcgtat ttggattcac gcacgacaca gcagttaaca atcgaagtct\n",
        "     4741 tagtgactgt cgatggtgta aattttagaa cagtcgttct aaataataag aacacttata\n",
        "     4801 gatcacagct tggatgcgtt ttctttaatg gtgctgatat ttctgatacc attcctgatg\n",
        "     4861 agaaacagaa tggtcacagt ttatatctag cagacaattt gactgctgat gaaacaaagg\n",
        "     4921 cgcttaaaga gttatatggc cccgttgatc ctactttctt acacagattc tattcactta\n",
        "     4981 aggctgcagt ccataagtgg aagatggttg tgtgtgataa ggtacgttct ctcaaattga\n",
        "     5041 gtgataataa ttgttatctt aatgcagtta ttatgacact tgatttattg aaggacatta\n",
        "     5101 aatttgttat acctgctcta cagcatgcat ttatgaaaca taagggcggt gattcaactg\n",
        "     5161 acttcatagc cctcattatg gcttatggca attgcacatt tggtgctcca gatgatgcct\n",
        "     5221 ctcggttact tcataccgtg cttgcaaagg ctgagttatg ctgttctgca cgcatggttt\n",
        "     5281 ggagagagtg gtgcaatgtc tgtggcataa aagatgttgt tctacaaggc ttaaaagctt\n",
        "     5341 gttgttacgt gggtgtgcaa actgttgaag atctgcgtgc tcgcatgaca tatgtatgcc\n",
        "     5401 agtgtggtgg tgaacgtcat cggcaaatag tcgaacacac caccccctgg ttgctgctct\n",
        "     5461 caggcacacc aaatgaaaaa ttggtgacaa cctccacggc gcctgatttt gtagcgttta\n",
        "     5521 atgtctttca gggcattgaa acggctgttg gccattatgt tcatgctcgc ctgaagggtg\n",
        "     5581 gtcttatttt aaagtttgac tctggcaccg ttagcaagac ttcagactgg aagtgcaagg\n",
        "     5641 tgacagatgt acttttctcc ggccaaaaat acagtagcga ttgtaatgtc gtacggtatt\n",
        "     5701 ctttggacgg taatttcaga acagaggttg atcccgacct atctgctttc tatgttaagg\n",
        "     5761 atggtaaata ctttacaagt gaaccacccg taacatattc accagctaca attttagctg\n",
        "     5821 gtagtgtcta cactaatagc tgccttgtat cgtctgatgg acaacctggc ggtgatgcta\n",
        "     5881 ttagtttgag ttttaataac cttttagggt ttgattctag taaaccagtc actaagaaat\n",
        "     5941 acacttactc cttcttgcct aaagaagacg gcgatgtgtt gttggctgag tttgacactt\n",
        "     6001 atgaccctat ttataagaat ggtgccatgt ataaaggcaa accaattctt tgggtcaaca\n",
        "     6061 aagcatctta tgatactaat cttaataagt tcaatagagc tagtttgcgt caaatttttg\n",
        "     6121 acgtagcccc cattgaactc gaaaataaat tcacaccttt gagtgtggag tctacaccag\n",
        "     6181 ttgaacctcc aactgtagat gtggtagcac ttcaacagga aatgacaatt gtcaaatgta\n",
        "     6241 agggtttaaa taaacctttc gtgaaggaca atgtcagttt cgttgctgat gactcaggta\n",
        "     6301 ctcccgttgt tgagtatctg tctaaagaag atctacatac attgtatgta gaccctaagt\n",
        "     6361 atcaagtcat tgtcttaaaa gacaatgtac tttcttctat gcttagattg cacaccgttg\n",
        "     6421 agtcaggtga tattaacgtt gttgcagctt ccggatcttt gacacgtaaa gtgaaattac\n",
        "     6481 tatttagggc ttcattttat ttcaaagaat ttgctacccg cactttcact gctaccactg\n",
        "     6541 ctgtaggtag ttgtataaag agtgtagtgc ggcatctagg tgttactaaa ggcatattga\n",
        "     6601 caggctgttt tagttttgtc aagatgttat ttatgcttcc actagcttac tttagtgatt\n",
        "     6661 caaaactcgg caccacagag gttaaagtga gtgctttgaa aacagctggc gttgtgacag\n",
        "     6721 gtaatgttgt aaaacagtgt tgcactgctg ctgttgattt aagtatggat aagttgcgcc\n",
        "     6781 gtgtggattg gaaatcaacc ctacggttgt tacttatgtt atgcacaact atggtattgt\n",
        "     6841 tgtcttctgt gtatcacttg tatgtcttca atcaggtctt atcaagtgat gttatgtttg\n",
        "     6901 aagatgccca aggtttgaaa aagttctaca aagaagttag agcttaccta ggaatctctt\n",
        "     6961 ctgcttgtga cggtcttgct tcagcttata gggcgaattc ctttgatgta cctacattct\n",
        "     7021 gcgcaaaccg ttctgcaatg tgtaattggt gcttgattag ccaagattcc ataactcact\n",
        "     7081 acccagctct taagatggtt caaacacatc ttagccacta tgttcttaac atagattggt\n",
        "     7141 tgtggtttgc atttgagact ggtttggcat acatgctcta tacctcggcc ttcaactggt\n",
        "     7201 tgttgttggc aggtacattg cattatttct ttgcacagac ttccatattt gtagactggc\n",
        "     7261 ggtcatacaa ttatgctgtg tctagtgcct tctggttatt cacccacatt ccaatggcgg\n",
        "     7321 gtttggtacg aatgtataat ttgttagcat gcctttggct tttacgcaag ttttatcagc\n",
        "     7381 atgtaatcaa tggttgcaaa gatacggcat gcttgctctg ctataagagg aaccgactta\n",
        "     7441 ctagagttga agcttctacc gttgtctgtg gtggaaaacg tacgttttat atcacagcaa\n",
        "     7501 atggcggtat ttcattctgt cgtaggcata attggaattg tgtggattgt gacactgcag\n",
        "     7561 gtgtggggaa taccttcatc tgtgaagaag tcgcaaatga cctcactacc gccctacgca\n",
        "     7621 ggcctattaa cgctacggat agatcacatt attatgtgga ttccgttaca gttaaagaga\n",
        "     7681 ctgttgttca gtttaattat cgtagagacg gtcaaccatt ctacgagcgg tttcccctct\n",
        "     7741 gcgcttttac aaatctagat aagttgaagt tcaaagaggt ctgtaaaact actactggta\n",
        "     7801 tacctgaata caactttatc atctacgact catcagatcg tggccaggaa agtttagcta\n",
        "     7861 ggtctgcatg tgtttattat tctcaagtct tgtgtaaatc aattcttttg gttgactcaa\n",
        "     7921 gtttggttac ttctgttggt gattctagtg aaatcgccac taaaatgttt gattcctttg\n",
        "     7981 ttaatagttt cgtctcgctg tataatgtca cacgcgataa gttggaaaaa cttatctcta\n",
        "     8041 ctgctcgtga tggcgtaagg cgaggcgata acttccatag tgtcttaaca acattcattg\n",
        "     8101 acgcagcacg aggccccgca ggtgtggagt ctgatgttga gaccaatgaa attgttgact\n",
        "     8161 ctgtgcagta tgctcataaa catgacatac aaattactaa tgagagttac aataattatg\n",
        "     8221 taccctcata tgttaaacct gatagtgtgt ctaccagtga tttaggtagt ctcattgatt\n",
        "     8281 gtaatgcggc ttcagttaac caaattgtct tgcgtaattc taatggtgct tgtatttgga\n",
        "     8341 acgctgctgc atatatgaaa ctctcggatg cacttaaacg acagattcgc attgcatgcc\n",
        "     8401 gtaagtgtaa tttagctttc cggttaacca cctcaaagct acgcgctaat gataatatct\n",
        "     8461 tatcagttag attcactgct aacaaaattg ttggtggtgc tcctacatgg tttaatgcgt\n",
        "     8521 tgcgtgactt tacgttaaag ggttacgttc ttgctaccat tattgtgttt ctgtgtgctg\n",
        "     8581 tactgatgta tttgtgttta cctacatttt ctatggtacc tgttgaattt tatgaagacc\n",
        "     8641 gcatcttgga ctttaaagtt cttgataatg gtatcattag ggatgtaaat cctgatgata\n",
        "     8701 agtgctttgc taataagcac cggtccttca cacaatggta tcatgagcat gttggtggtg\n",
        "     8761 tctatgacaa ctctatcaca tgcccattga cagttgcagt aattgctgga gttgctggtg\n",
        "     8821 ctcgcattcc agacgtacct actacattgg cttgggtgaa caatcagata attttctttg\n",
        "     8881 tttctcgagt ctttgctaat acaggcagtg tttgctacac tcctatagat gagataccct\n",
        "     8941 ataagagttt ctctgatagt ggttgcattc ttccatctga gtgcactatg tttagggatg\n",
        "     9001 cagagggccg tatgacacca tactgccatg atcctactgt tttgcctggg gcttttgcgt\n",
        "     9061 acagtcagat gaggcctcat gttcgttacg acttgtatga tggtaacatg tttattaaat\n",
        "     9121 ttcctgaagt agtatttgaa agtacactta ggattactag aactctgtca actcagtact\n",
        "     9181 gccggttcgg tagttgtgag tatgcacaag agggtgtttg tattaccaca aatggctcgt\n",
        "     9241 gggccatttt taatgaccac catcttaata gacctggtgt ctattgtggc tctgatttta\n",
        "     9301 ttgacattgt caggcggtta gcagtatcac tgttccagcc tattacttat ttccaattga\n",
        "     9361 ctacctcatt ggtcttgggt ataggtttgt gtgcgttcct gactttgctc ttctattata\n",
        "     9421 ttaataaagt aaaacgtgct tttgcagatt acacccagtg tgctgtaatt gctgttgttg\n",
        "     9481 ctgctgttct taatagcttg tgcatctgct ttgttgcctc tataccattg tgtatagtac\n",
        "     9541 cttacactgc attgtactat tatgctacat tctattttac taatgagcct gcatttatta\n",
        "     9601 tgcatgtttc ttggtacatt atgttcgggc ctatcgttcc catatggatg acctgcgttt\n",
        "     9661 atacagttgc aatgtgcttt agacacttct tctgggtttt agcttatttt agtaagaaac\n",
        "     9721 atgtagaagt ttttactgat ggtaagctta attgtagttt ccaggacgct gcctctaata\n",
        "     9781 tctttgttat taacaaggac acttatgcag ctcttagaaa ctctttaact aatgatgcct\n",
        "     9841 attcacgatt tttggggttg tttaacaagt ataagtactt ctctggtgct atggaaacag\n",
        "     9901 ccgcttatcg tgaagctgca gcatgtcatc ttgctaaagc cttacaaaca tacagcgaga\n",
        "     9961 ctggtagtga tcttctttac caaccaccca actgtagcat aacctctggc gtgttgcaaa\n",
        "    10021 gcggtttggt gaaaatgtca catcccagtg gagatgttga ggcttgtatg gttcaggtta\n",
        "    10081 cctgcggtag catgactctt aatggtcttt ggcttgacaa cacagtctgg tgcccacgac\n",
        "    10141 acgtaatgtg cccggctgac cagttgtctg atcctaatta tgatgccttg ttgatttcta\n",
        "    10201 tgactaatca tagtttcagt gtgcaaaaac acattggcgc tccagcaaac ttgcgtgttg\n",
        "    10261 ttggtcatgc catgcaaggc actcttttga agttgactgt cgatgttgct aaccctagca\n",
        "    10321 ctccagccta cacttttaca acagtgaaac ctggcgcagc atttagtgtg ttagcatgct\n",
        "    10381 ataatggtcg tccgactggt acattcactg ttgtaatgcg ccctaactac acaattaagg\n",
        "    10441 gttcctttct gtgtggttct tgtggtagtg ttggttacac caaggagggt agtgtgatca\n",
        "    10501 atttttgtta catgcatcaa atggaacttg ctaatggtac acataccggt tcagcatttg\n",
        "    10561 atggtactat gtatggtgcc tttatggata aacaagtgca ccaagttcag ttaacagaca\n",
        "    10621 aatactgcag tgttaatgta gtagcttggc tttacgcagc aatacttaat ggttgcgctt\n",
        "    10681 ggtttgtaaa acctaatcgc actagtgttg tttcttttaa tgaatgggct cttgccaacc\n",
        "    10741 aattcactga atttgttggc actcaatccg ttgacatgtt agctgtcaaa acaggcgttg\n",
        "    10801 ctattgaaca gctgctttat gcgatccaac aactttatac tgggttccag ggaaagcaaa\n",
        "    10861 tccttggcag tactatgttg gaagatgaat tcacacctga ggatgttaat atgcagatta\n",
        "    10921 tgggtgtggt tatgcagagt ggtgtgagaa aagttacata tggtactgcg cattggttgt\n",
        "    10981 tcgcgaccct tgtctcaacc tatgtgataa tcttacaagc cactaaattt actttgtgga\n",
        "    11041 actacttgtt tgagactatt cccacacagt tgttcccact cttatttgtg actatggcct\n",
        "    11101 tcgttatgtt gttggttaaa cacaaacaca cctttttgac acttttcttg ttgcctgtgg\n",
        "    11161 ctatttgttt gacttatgca aacatagtct acgagcccac tactcccatt tcgtcagcgc\n",
        "    11221 tgattgcagt tgcaaattgg cttgccccca ctaatgctta tatgcgcact acacatactg\n",
        "    11281 atattggtgt ctacattagt atgtcacttg tattagtcat tgtagtgaag agattgtaca\n",
        "    11341 acccatcact ttctaacttt gcgttagcat tgtgcagtgg tgtaatgtgg ttgtacactt\n",
        "    11401 atagcattgg agaagcctca agccccattg cctatctggt ttttgtcact acactcacta\n",
        "    11461 gtgattatac gattacagtc tttgttactg tcaaccttgc aaaagtttgc acttatgcca\n",
        "    11521 tctttgctta ctcaccacag cttacacttg tgtttccgga agtgaagatg atacttttat\n",
        "    11581 tatacacatg tttaggtttc atgtgtactt gctattttgg tgtcttctct tttttgaacc\n",
        "    11641 ttaagcttag agcacctatg ggtgtctatg actttaaggt ctcaacacaa gagttcagat\n",
        "    11701 tcatgactgc taacaatcta actgcaccta gaaattcttg ggaggctatg gctctgaact\n",
        "    11761 ttaagttaat aggtattggc ggtacacctt gtataaaggt tgctgctatg cagtctaaac\n",
        "    11821 ttacagatct taaatgcaca tctgtggttc tcctctctgt gctccaacag ttacacttag\n",
        "    11881 aggctaatag tagggcctgg gctttctgtg ttaaatgcca taatgatata ttggcagcaa\n",
        "    11941 cagaccccag tgaggctttc gagaaattcg taagtctctt tgccacttta atgacttttt\n",
        "    12001 ctggtaatgt agatcttgat gcgttagcta gtgatatttt tgacactcct agcgtacttc\n",
        "    12061 aagctactct ttctgagttt tcacacttag ctacctttgc tgagttggaa gctgcgcaga\n",
        "    12121 aagcctatca ggaagctatg gactctggtg acacctcacc acaagttctt aaggctttgc\n",
        "    12181 agaaggctgt taatatagct aaaaacgcct atgagaagga taaggcagtg gcccgtaagt\n",
        "    12241 tagaacgtat ggctgaccag gctatgactt ctatgtataa gcaagcacgt gctgaagaca\n",
        "    12301 agaaagcaaa aattgtcagt gctatgcaaa ctatgttgtt tggtatgatt aagaagctcg\n",
        "    12361 acaacgatgt tcttaatggt atcatttcta acgctaggaa tggttgtata cctcttagtg\n",
        "    12421 tcattccact gtgtgcttca aataaacttc gcgttgtaat tcctgacttc accgtctgga\n",
        "    12481 atcaggtagt cacatatccc tcgcttaact acgctggggc tttgtgggac attacagtta\n",
        "    12541 taaacaatgt ggacaatgaa attgttaagt cttcagatgt tgtagacagc aatgaaaatt\n",
        "    12601 taacatggcc acttgtttta gaatgcacta gggcatccac ttctgccgtt aagttgcaaa\n",
        "    12661 ataatgagat caaaccttca ggtttaaaaa ccatggttgt gtctgcaggt caagagcaaa\n",
        "    12721 ctaactgtaa tactagttcc ttagcttatt acgaacctgt gcagggtcgt aaaatgctga\n",
        "    12781 tggctcttct ttctgataat gcctatctca aatgggcgcg tgttgaaggt aaggacggat\n",
        "    12841 ttgttagtgt agagctacaa cctccttgca aattcttgat tgcgggacca aaaggacctg\n",
        "    12901 aaatccgata tctctatttt gttaaaaatc ttaacaacct tcatcgcggg caagtgttag\n",
        "    12961 ggcacattgc tgcgactgtt agattgcaag ctggttctaa caccgagttt gcctctaatt\n",
        "    13021 cttcggtgtt gtcacttgtt aacttcaccg ttgatcctca aaaagcttat ctcgattttg\n",
        "    13081 tcaatgcggg aggtgcccca ttgacaaatt gtgttaagat gcttactcct aaaactggta\n",
        "    13141 caggtatagc tatatctgtt aaaccagaga gtacagctga tcaagagact tatggtggag\n",
        "    13201 cttcagtgtg tctctattgc cgtgcgcata tagaacatcc tgatgtctct ggtgtttgta\n",
        "    13261 aatataaggg taagtttgtc caaatccctg ctcagtgtgt ccgtgaccct gtgggatttt\n",
        "    13321 gtttgtcaaa taccccctgt aatgtctgtc aatattggat tggatatggg tgcaattgtg\n",
        "    13381 actcgcttag gcaagcagca ctgccccaat ctaaagattc caatttttta aacgagtccg\n",
        "    13441 gggttctatt gtaaatgccc gaatagaacc ctgttcaagt ggtttgtcca ctgatgtcgt\n",
        "    13501 ctttagggca tttgacatct gcaactataa ggctaaggtt gctggtattg gaaaatacta\n",
        "    13561 caagactaat acttgtaggt ttgtagaatt agatgaccaa gggcatcatt tagactccta\n",
        "    13621 ttttgtcgtt aagaggcata ctatggagaa ttatgaacta gagaagcact gttacgattt\n",
        "    13681 gttacgtgac tgtgatgctg tagctcccca tgatttcttc atctttgatg tagacaaagt\n",
        "    13741 taaaacacct catattgtac gtcagcgttt aactgagtac actatgatgg atcttgtata\n",
        "    13801 tgccctgagg cactttgatc aaaatagcga agtgcttaag gctatcttag tgaagtatgg\n",
        "    13861 ttgctgtgat gttacctact ttgaaaataa actctggttt gattttgttg aaaatcccag\n",
        "    13921 tgttattggt gtttatcata aacttggaga acgtgtacgc caagctatct taaacactgt\n",
        "    13981 taaattttgt gaccacatgg tcaaggctgg tttagtcggt gtgctcacac tagacaacca\n",
        "    14041 ggaccttaat ggcaagtggt atgattttgg tgacttcgta atcactcaac ctggttcagg\n",
        "    14101 agtagctata gttgatagct actattctta tttgatgcct gtgctctcaa tgaccgattg\n",
        "    14161 tctggccgct gagacacata gggattgtga ttttaataaa ccactcattg agtggccact\n",
        "    14221 tactgagtat gattttactg attataaggt acaactcttt gagaagtact ttaaatattg\n",
        "    14281 ggatcagacg tatcacgcaa attgcgttaa ttgtactgat gaccgttgtg tgttacattg\n",
        "    14341 tgctaatttc aatgtattgt ttgctatgac catgcctaag acttgtttcg gacccatagt\n",
        "    14401 ccgaaagatc tttgttgatg gcgtgccatt tgtagtatct tgtggttatc actacaaaga\n",
        "    14461 attaggttta gtcatgaata tggatgttag tctccataga cataggctct ctcttaagga\n",
        "    14521 gttgatgatg tatgccgctg atccagccat gcacattgcc tcctctaacg cttttcttga\n",
        "    14581 tttgaggaca tcatgtttta gtgtcgctgc acttacaact ggtttgactt ttcaaactgt\n",
        "    14641 gcggcctggc aattttaacc aagacttcta tgatttcgtg gtatctaaag gtttctttaa\n",
        "    14701 ggagggctct tcagtgacgc tcaaacattt tttctttgct caagatggta atgctgctat\n",
        "    14761 tacagattat aattactatt cttataatct gcctactatg tgtgacatca aacaaatgtt\n",
        "    14821 gttctgcatg gaagttgtaa acaagtactt cgaaatctat gacggtggtt gtcttaatgc\n",
        "    14881 ttctgaagtg gttgttaata atttagacaa gagtgctggc catcctttta ataagtttgg\n",
        "    14941 caaagctcgt gtctattatg agagcatgtc ttaccaggag caagatgaac tctttgccat\n",
        "    15001 gacaaagcgt aacgtcattc ctaccatgac tcaaatgaat ctaaaatatg ctattagtgc\n",
        "    15061 taagaataga gctcgcactg ttgcaggcgt gtccatactt agcacaatga ctaatcgcca\n",
        "    15121 gtaccatcag aaaatgctta agtccatggc tgcaactcgt ggagcgactt gcgtcattgg\n",
        "    15181 tactacaaag ttctatggtg gctgggattt catgcttaaa acattgtaca aagatgttga\n",
        "    15241 taatccgcat cttatgggtt gggattaccc taagtgtgat agagctatgc ctaatatgtg\n",
        "    15301 tagaatcttc gcttcactca tattagctcg taaacatggc acttgttgta ctacaaggga\n",
        "    15361 cagattttat cgcttggcaa atgagtgtgc tcaggtgcta agcgaatatg ttctatgtgg\n",
        "    15421 tggtggttac tacgtcaaac ctggaggtac cagtagcgga gatgccacca ctgcatatgc\n",
        "    15481 caatagtgtc tttaacattt tgcaggcgac aactgctaat gtcagtgcac ttatgggtgc\n",
        "    15541 taatggcaac aagattgttg acaaagaagt taaagacatg cagtttgatt tgtatgtcaa\n",
        "    15601 tgtttacagg agcactagcc cagaccccaa atttgttgat aaatactatg cttttcttaa\n",
        "    15661 taagcacttt tctatgatga tactgtctga tgacggtgtc gtttgctata atagtgatta\n",
        "    15721 tgcagctaag ggttacattg ctggaataca gaattttaag gaaacgctgt attatcagaa\n",
        "    15781 caatgtcttt atgtctgaag ctaaatgctg ggtggaaacc gatctgaaga aagggccaca\n",
        "    15841 tgaattctgt tcacagcata cgctttatat taaggatggc gacgatggtt acttccttcc\n",
        "    15901 ttatccagac ccttcaagaa ttttgtctgc cggttgcttt gtagatgata tcgttaagac\n",
        "    15961 tgacggtaca ctcatggtag agcggtttgt gtctttggct atagatgctt accctctcac\n",
        "    16021 aaagcatgaa gatatagaat accagaatgt attctgggtc tacttacagt atatagaaaa\n",
        "    16081 actgtataaa gaccttacag gacacatgct tgacagttat tctgtcatgc tatgtggtga\n",
        "    16141 taattctgct aagttttggg aagaggcatt ctacagagat ctctatagtt cgcctaccac\n",
        "    16201 tttgcaggct gtcggttcat gcgttgtatg ccattcacag acttccctac gctgtgggac\n",
        "    16261 atgcatccgt agaccatttc tctgctgtaa atgctgctat gatcatgtta tagcaactcc\n",
        "    16321 acataagatg gttttgtctg tttctcctta cgtttgtaat gcccctggtt gtggcgtttc\n",
        "    16381 agacgttact aagctatatt taggtggtat gagctacttt tgtgtagatc atagacctgt\n",
        "    16441 gtgtagtttt ccactttgcg ctaatggtct tgtattcggc ttatacaaga atatgtgcac\n",
        "    16501 aggtagtcct tctatagttg aatttaatag gttggctacc tgtgactgga ctgaaagtgg\n",
        "    16561 tgattacacc cttgccaata ctacaacaga accactcaaa ctttttgctg ctgagacttt\n",
        "    16621 acgtgccact gaagaggcgt ctaagcagtc ttatgctatt gccaccatca aagaaattgt\n",
        "    16681 tggtgagcgc caactattac ttgtgtggga ggctggcaag tccaaaccac cactcaatcg\n",
        "    16741 taattatgtt tttactggtt atcatataac caaaaatagt aaagtgcagc tcggtgagta\n",
        "    16801 catcttcgag cgcattgatt atagtgatgc tgtatcctac aagtctagta caacgtataa\n",
        "    16861 actgactgta ggtgacatct tcgtacttac ctctcactct gtggctacct tgacggcgcc\n",
        "    16921 cacaattgtg aatcaagaga ggtatgttaa aattactggg ttgtacccaa ccattacggt\n",
        "    16981 acctgaagag ttcgcaagtc atgttgccaa cttccaaaaa tcaggttata gtaaatatgt\n",
        "    17041 cactgttcag ggaccacctg gcactggcaa aagtcatttt gctatagggt tagcgattta\n",
        "    17101 ctaccctaca gcacgtgttg tttatacagc atgttcacac gcagctgttg atgctttgtg\n",
        "    17161 tgaaaaagct tttaaatatt tgaacattgc taaatgttcc cgtatcattc ctgcaaaggc\n",
        "    17221 acgtgttgag tgctatgaca ggtttaaagt taatgagaca aattctcaat atttgtttag\n",
        "    17281 tactattaat gctctaccag aaacttctgc cgatattctg gtggttgatg aggttagtat\n",
        "    17341 gtgcactaat tatgatcttt caattattaa tgcacgtatt aaagctaagc acattgtcta\n",
        "    17401 tgtaggagat ccagcacagt tgccagctcc taggactttg ttgactagag gcacattgga\n",
        "    17461 accagaaaat ttcaatagtg tcactagatt gatgtgtaac ttaggtcctg acatattttt\n",
        "    17521 aagtatgtgc tacaggtgtc ctaaggaaat agtaagcact gtgagcgctc ttgtctacaa\n",
        "    17581 taataaattg ttagccaaga aggagctttc aggccagtgc tttaaaatac tctataaggg\n",
        "    17641 caatgtgacg catgatgcta gctctgccat taatagacca caactcacat ttgtgaagaa\n",
        "    17701 ttttattact gccaatccgg catggagtaa ggcagtcttt atttcgcctt ataattcaca\n",
        "    17761 gaatgctgtg gctcgttcaa tgctgggtct tactactcag actgttgatt cctcacaggg\n",
        "    17821 ttcagaatac cagtatgtta tcttctgtca aacagcagat acggcacatg ctaacaacat\n",
        "    17881 taacagattt aatgttgcaa tcactcgtgc ccaaaaaggt attctttgtg ttatgacatc\n",
        "    17941 tcaggcactc tttgagtcct tagagtttac tgaattgtct tttactaatt acaagctcca\n",
        "    18001 gtctcagatt gtaactggcc tttttaaaga ttgctctaga gaaacttctg gcctctcacc\n",
        "    18061 tgcttatgca ccaacatacg ttagtgttga tgacaagtat aagacgagtg atgagctttg\n",
        "    18121 cgtgaatctt aatttacccg caaatgtccc atactctcgt gttatttcca ggatgggctt\n",
        "    18181 taaactcgat gcaacagttc ctggatatcc taagcttttc attactcgtg aagaggctgt\n",
        "    18241 aaggcaagtt cgaagctgga taggcttcga tgttgagggt gctcatgctt cccgtaatgc\n",
        "    18301 atgtggcacc aatgtgcctc tacaattagg attttcaact ggtgtgaact ttgttgttca\n",
        "    18361 gccagttggt gttgtagaca ctgagtgggg taacatgtta acgggcattg ctgcccgtcc\n",
        "    18421 tccaccaggt gaacagttta agcacctcgt gcctcttatg cataaggggg ctgcgtggcc\n",
        "    18481 tattgttaga cgacgtatag tgcaaatgtt gtcagacact ttagacaaat tgtctgatta\n",
        "    18541 ctgtacgttt gtttgttggg ctcatggctt tgaattaacg tctgcatcat acttttgcaa\n",
        "    18601 gataggtaag gaacagaagt gttgcatgtg caatagacgc gctgcagcgt actcttcacc\n",
        "    18661 tctgcaatct tatgcctgct ggactcattc ctgcggttat gattatgtct acaacccttt\n",
        "    18721 ctttgtcgat gttcaacagt ggggttatgt aggcaatctt gctactaatc acgatcgtta\n",
        "    18781 ttgctctgtc catcaaggag ctcatgtggc ttctaatgat gcaataatga ctcgttgttt\n",
        "    18841 agctattcat tcttgtttta tagaacgtgt ggattgggat atagagtatc cttatatctc\n",
        "    18901 acatgaaaag aaattgaatt cctgttgtag aatcgttgag cgcaacgtcg tacgtgctgc\n",
        "    18961 tcttcttgcc ggttcatttg acaaagtcta tgatattggc aatcctaaag gaattcctat\n",
        "    19021 tgttgatgac cctgtggttg attggcatta ttttgatgca cagcccttga ccagaaaggt\n",
        "    19081 acaacagctt ttctatacag aggacatggc ctcaagattt gctgatgggc tctgcttatt\n",
        "    19141 ttggaactgt aatgtaccaa aatatcctaa taatgcaatt gtatgcaggt ttgacacacg\n",
        "    19201 tgtgcattct gagttcaatt tgccaggttg tgatggcggt agtttgtatg ttaacaagca\n",
        "    19261 cgcttttcat acaccagcat atgatgtgag tgcattccgt gatctgaaac ctttaccatt\n",
        "    19321 cttttattat tctactacac catgtgaagt gcatggtaat ggtagtatga tagaggatat\n",
        "    19381 tgattatgta cccctaaaat ctgcagtctg tattacagct tgtaatttag ggggcgctgt\n",
        "    19441 ttgtaggaag catgctacag agtacagaga gtatatggaa gcatataatc ttgtctctgc\n",
        "    19501 atcaggtttc cgcctttggt gttataagac ctttgatatt tataatctct ggtctacttt\n",
        "    19561 tacaaaagtt caaggtttgg aaaacattgc ttttaatgtt gttaaacaag gccattttat\n",
        "    19621 tggtgttgag ggtgaactac ctgtagctgt agtcaatgat aagatcttca ccaagagtgg\n",
        "    19681 cgttaatgac atttgtatgt ttgagaataa aaccactttg cctactaata tagcttttga\n",
        "    19741 actctatgct aagcgtgctg tacgctcgca tcccgatttc aaattgctac acaatttaca\n",
        "    19801 agcagacatt tgctacaagt tcgtcctttg ggattatgaa cgtagcaata tttatggtac\n",
        "    19861 tgctactatt ggtgtatgta agtacactga tattgatgtt aattcagctt tgaatatatg\n",
        "    19921 ttttgacata cgcgataatg gttcattgga gaagttcatg tctactccca atgccatctt\n",
        "    19981 tatttctgat agaaaaatta agaaataccc ttgtatggta ggtcctgatt atgcttactt\n",
        "    20041 caatggtgct atcatccgtg atagtgatgt tgttaaacaa ccagtgaagt tctacttgta\n",
        "    20101 taagaaagtc aataatgagt ttattgatcc tactgagtgt atttacactc agagtcgctc\n",
        "    20161 ttgtagtgac ttcctacccc tgtctgacat ggagaaagac tttctatctt ttgatagtga\n",
        "    20221 tgttttcatt aagaagtatg gcttggaaaa ctatgctttt gagcacgtag tctatggaga\n",
        "    20281 cttctctcat actacgttag gcggtcttca cttgcttatt ggtttataca agaagcaaca\n",
        "    20341 ggaaggtcat attattatgg aagaaatgct aaaaggtagc tcaactattc ataactattt\n",
        "    20401 tattactgag actaacacag cggcttttaa ggcggtgtgt tctgttatag atttaaagct\n",
        "    20461 tgacgacttt gttatgattt taaagagtca agaccttggc gtagtatcca aggttgtcaa\n",
        "    20521 ggttcctatt gacttaacaa tgattgagtt tatgttatgg tgtaaggatg gacaggttca\n",
        "    20581 aaccttctac cctcgactcc aggcttctgc agattggaaa cctggtcatg caatgccatc\n",
        "    20641 cctctttaaa gttcaaaatg taaaccttga acgttgtgag cttgctaatt acaagcaatc\n",
        "    20701 tattcctatg cctcgcggtg tgcacatgaa catcgctaaa tatatgcaat tgtgccagta\n",
        "    20761 tttaaatact tgcacattag ccgtgcctgc caatatgcgt gttatacatt ttggcgctgg\n",
        "    20821 ttctgataaa ggtatcgctc ctggtacatc agttttacga cagtggcttc ctacagatgc\n",
        "    20881 cattattata gataatgatt taaatgagtt cgtgtcagat gctgacataa ctttatttgg\n",
        "    20941 agattgtgta actgtacgtg tcggccaaca agtggatctt gttatttccg acatgtatga\n",
        "    21001 tcctactact aagaatgtaa caggtagtaa tgagtcaaag gctttattct ttacttacct\n",
        "    21061 gtgtaacctc attaataata atcttgctct tggtgggtct gttgctatta aaataacaga\n",
        "    21121 acactcttgg agcgttgaac tttatgaact tatgggaaaa tttgcttggt ggactgtttt\n",
        "    21181 ctgcaccaat gcaaatgcat cctcatctga aggattcctc ttaggtatta attacttggg\n",
        "    21241 tactattaaa gaaaatatag atggtggtgc tatgcacgcc aactatatat tttggagaaa\n",
        "    21301 ttccactcct atgaatctga gtacttactc actttttgat ttatccaagt ttcaattaaa\n",
        "    21361 attaaaagga acaccagttc ttcaattaaa ggagagtcaa attaacgaac tcgtaatatc\n",
        "    21421 tctcctgtcg cagggtaagt tacttatccg tgacaatgat acactcagtg tttctactga\n",
        "    21481 tgttcttgtt aacacctaca gaaagttacg ttgatgtagg gccagattct gttaagtctg\n",
        "    21541 cttgtattga ggttgatata caacagactt tctttgataa aacttggcct aggccaattg\n",
        "    21601 atgtttctaa ggctgacggt attatatacc ctcaaggccg tacatattct aacataacta\n",
        "    21661 tcacttatca aggtcttttt ccctatcagg gagaccatgg tgatatgtat gtttactctg\n",
        "    21721 caggacatgc tacaggcaca actccacaaa agttgtttgt agctaactat tctcaggacg\n",
        "    21781 tcaaacagtt tgctaatggg tttgtcgtcc gtataggagc agctgccaat tccactggca\n",
        "    21841 ctgttattat tagcccatct accagcgcta ctatacgaaa aatttaccct gcttttatgc\n",
        "    21901 tgggttcttc agttggtaat ttctcagatg gtaaaatggg ccgcttcttc aatcatactc\n",
        "    21961 tagttctttt gcccgatgga tgtggcactt tacttagagc tttttattgt attctagagc\n",
        "    22021 ctcgctctgg aaatcattgt cctgctggca attcctatac ttcttttgcc acttatcaca\n",
        "    22081 ctcctgcaac agattgttct gatggcaatt acaatcgtaa tgccagtctg aactctttta\n",
        "    22141 aggagtattt taatttacgt aactgcacct ttatgtacac ttataacatt accgaagatg\n",
        "    22201 agattttaga gtggtttggc attacacaaa ctgctcaagg tgttcacctc ttctcatctc\n",
        "    22261 ggtatgttga tttgtacggc ggcaatatgt ttcaatttgc caccttgcct gtttatgata\n",
        "    22321 ctattaagta ttattctatc attcctcaca gtattcgttc tatccaaagt gatagaaaag\n",
        "    22381 cttgggctgc cttctacgta tataaacttc aaccgttaac tttcctgttg gatttttctg\n",
        "    22441 ttgatggtta tatacgcaga gctatagact gtggttttaa tgatttgtca caactccact\n",
        "    22501 gctcatatga atccttcgat gttgaatctg gagtttattc agtttcgtct ttcgaagcaa\n",
        "    22561 aaccttctgg ctcagttgtg gaacaggctg aaggtgttga atgtgatttt tcacctcttc\n",
        "    22621 tgtctggcac acctcctcag gtttataatt tcaagcgttt ggtttttacc aattgcaatt\n",
        "    22681 ataatcttac caaattgctt tcactttttt ctgtgaatga ttttacttgt agtcaaatat\n",
        "    22741 ctccagcagc aattgctagc aactgttatt cttcactgat tttggattat ttttcatacc\n",
        "    22801 cacttagtat gaaatccgat ctcagtgtta gttctgctgg tccaatatcc cagtttaatt\n",
        "    22861 ataaacagtc cttttctaat cccacatgtt tgattttagc gactgttcct cataacctta\n",
        "    22921 ctactattac taagcctctt aagtacagct atattaacaa gtgctctcgt cttctttctg\n",
        "    22981 atgatcgtac tgaagtacct cagttagtga acgctaatca atactcaccc tgtgtatcca\n",
        "    23041 ttgtcccatc cactgtgtgg gaagacggtg attattatag gaaacaacta tctccacttg\n",
        "    23101 aaggtggtgg ctggcttgtt gctagtggct caactgttgc catgactgag caattacaga\n",
        "    23161 tgggctttgg tattacagtt caatatggta cagacaccaa tagtgtttgc cccaagcttg\n",
        "    23221 aatttgctaa tgacacaaaa attgcctctc aattaggcaa ttgcgtggaa tattccctct\n",
        "    23281 atggtgtttc gggccgtggt gtttttcaga attgcacagc tgtaggtgtt cgacagcagc\n",
        "    23341 gctttgttta tgatgcgtac cagaatttag ttggctatta ttctgatgat ggcaactact\n",
        "    23401 actgtttgcg tgcttgtgtt agtgttcctg tttctgtcat ctatgataaa gaaactaaaa\n",
        "    23461 cccacgctac tctatttggt agtgttgcat gtgaacacat tttctctacc atgtctcaat\n",
        "    23521 actcccgttc tacgcgatca atgcttaaac ggcgagattc tacatatggt ccccttcaga\n",
        "    23581 cacctgttgg ttgtgtccta ggacttgtta attcctcttt gttcgtagag gactgcaagt\n",
        "    23641 tgcctcttgg tcaatctctc tgtgctcttc ctgacacacc tagtactctc acacctcgca\n",
        "    23701 gtgtgcgctc tgttccaggt gaaatgcgct tggcatccat tgcttttaat catcctattc\n",
        "    23761 aggttgatca acttaatagt agttatttta aattaagtat acctactaat ttttcctttg\n",
        "    23821 gtgtgactca ggagtacatt cagacaacca ttcagaaagt tactgttgat tgtaaacagt\n",
        "    23881 acgtttgcaa tggtttccag aagtgtgagc aattactgcg cgagtatggc cagttttgtt\n",
        "    23941 ccaaaataaa ccgggctctc catggtgcca atttacgcca ggatgattct gtacgtaatt\n",
        "    24001 tgtttgcgag cgtgaaaagc tctcaatcat ctcctatcat accaggtttt ggaggtgact\n",
        "    24061 ttaatttgac acttctagaa cctgtttcta tatctactgg cagtcgtagt gcacgtagtg\n",
        "    24121 ctattgagga tttgctattt gacaaagtca ctatagctga tcctggttat atgcaaggtt\n",
        "    24181 acgatgattg catgcagcaa ggtccagcat cagctcgtga tcttatttgt gctcaatatg\n",
        "    24241 tggctggtta caaagtatta cctcctctta tggatgttaa tatggaagcc gcgtatacct\n",
        "    24301 catctttgct tggcagcata gcaggtgttg gctggactgc tggcttatcc tcctttgctg\n",
        "    24361 ctattccatt tgcacagagt atcttttata ggttaaacgg tgttggcatt actcaacagg\n",
        "    24421 ttctttcaga gaaccaaaag cttattgcca ataagtttaa tcaggctctg ggagctatgc\n",
        "    24481 aaacaggctt cactacaact aatgaagctt ttcggaaggt tcaggatgct gtgaacaaca\n",
        "    24541 atgcacaggc tctatccaaa ttagctagcg agctatctaa tacttttggt gctatttccg\n",
        "    24601 cctctattgg agacatcata caacgtcttg atgttctcga acaggacgcc caaatagaca\n",
        "    24661 gacttattaa tggccgtttg acaacactaa atgcttttgt tgcacagcag cttgttcgtt\n",
        "    24721 ccgaatcagc tgctctttcc gctcaattgg ctaaagataa agtcaatgag tgtgtcaagg\n",
        "    24781 cacaatccaa gcgttctgga ttttgcggtc aaggcacaca tatagtgtcc tttgttgtaa\n",
        "    24841 atgcccctaa tggcctttac ttcatgcatg ttggttatta ccctagcaac cacattgagg\n",
        "    24901 ttgtttctgc ttatggtctt tgcgatgcag ctaaccctac taattgtata gcccctgtta\n",
        "    24961 atggctactt tattaaaact aataacacta ggattgttga tgagtggtca tatactggct\n",
        "    25021 cgtccttcta tgcacctgag cccatcacct ctcttaatac taagtatgtt gcaccacagg\n",
        "    25081 tgacatacca aaacatttct actaacctcc ctcctcctct tctcggcaat tccaccggga\n",
        "    25141 ttgacttcca agatgagttg gatgagtttt tcaaaaatgt tagcaccagt atacctaatt\n",
        "    25201 ttggttctct aacacagatt aatactacat tactcgatct tacctacgag atgttgtctc\n",
        "    25261 ttcaacaagt tgttaaagcc cttaatgagt cttacataga ccttaaagag cttggcaatt\n",
        "    25321 atacttatta caacaaatgg ccgtggtaca tttggcttgg tttcattgct gggcttgttg\n",
        "    25381 ccttagctct atgcgtcttc ttcatactgt gctgcactgg ttgtggcaca aactgtatgg\n",
        "    25441 gaaaacttaa gtgtaatcgt tgttgtgata gatacgagga atacgacctc gagccgcata\n",
        "    25501 aggttcatgt tcactaatta acgaactatc aatgagagtt caaagaccac ccactctctt\n",
        "    25561 gttagtgttc tcactctctc ttttggtcac tgcattttca aaacctctct atgtacctga\n",
        "    25621 gcattgtcag aattattctg gttgcatgct tagggcttgt attaaaactg cccaagctga\n",
        "    25681 tacagctggt ctttatacaa attttcgaat tgacgtccca tctgcagaat caactggtac\n",
        "    25741 tcaatcagtt tctgtcgatc gtgagtcaac ttcaactcat gatggtccta ccgaacatgt\n",
        "    25801 tactagtgtg aatctttttg acgttggtta ctcagttaat taacgaactc tatggattac\n",
        "    25861 gtgtctctgc ttaatcaaat ttggcagaag taccttaatt caccgtatac tacttgtttg\n",
        "    25921 tatatcccta aacccacagc taagtataca cctttagttg gcacttcatt gcaccctgtg\n",
        "    25981 ctgtggaact gtcagctatc ctttgctggt tatactgaat ctgctgttaa ttctacaaaa\n",
        "    26041 gctttggcca aacaggacgc agctcagcga atcgcttggt tgctacataa ggatggagga\n",
        "    26101 atccctgatg gatgttccct ctacctccgg cactcaagtt tattcgcgca aagcgaggaa\n",
        "    26161 gaggagtcat tctccaacta agaaactgcg ctacgttaag cgtagatttt ctcttctgcg\n",
        "    26221 ccctgaagac cttagtgtta ttgtccaacc aacacactat gtcagggtta cattttcaga\n",
        "    26281 ccccaacatg tggtatctac gttcgggtca tcatttacac tcagttcaca attggcttaa\n",
        "    26341 accttatggc ggccaacctg tttctgagta ccatattact ctagctttgc taaatctcac\n",
        "    26401 tgatgaagat ttagctagag atttttcacc cattgcgctc tttttgcgca atgtcagatt\n",
        "    26461 tgagctacat gagttcgcct tgctgcgcaa aactcttgtt cttaatgcat cagagatcta\n",
        "    26521 ctgtgctaac atacatagat ttaagcctgt gtatagagtt aacacggcaa tccctactat\n",
        "    26581 taaggattgg cttctcgttc agggattttc cctttaccat agtggcctcc ctttacatat\n",
        "    26641 gtcaatctct aaattgcatg cactggatga tgttactcgc aattacatca ttacaatgcc\n",
        "    26701 atgctttaga acttatcctc aacaaatgtt tgttactcct ttggccgtag atgttgtctc\n",
        "    26761 catacggtct tccaatcagg gtaataaaca aattgttcat tcttacccca ttttacatca\n",
        "    26821 tccaggattt taacgaacta tggctttctc ggcgtcttta tttaaacccg tccagctagt\n",
        "    26881 cccagtttct cctgcatttc atcgcattga gtctactgac tctattgttt tcacatacat\n",
        "    26941 tcctgctagc ggctatgtag ctgctttagc tgtcaatgtg tgtctcattc ccctattatt\n",
        "    27001 actgctacgt caagatactt gtcgtcgcag cattatcaga actatggttc tctatttcct\n",
        "    27061 tgttctgtat aactttttat tagccattgt actagtcaat ggtgtacatt atccaactgg\n",
        "    27121 aagttgcctg atagccttct tagttatcct cataatactt tggtttgtag atagaattcg\n",
        "    27181 tttctgtctc atgctgaatt cctacattcc actgtttgac atgcgttctc actttattcg\n",
        "    27241 tgttagtaca gtttcttctc atggtatggt ccctgtcata cacaccaaac cattatttat\n",
        "    27301 tagaaacttc gatcagcgtt gcagctgttc tcgttgtttt tatttgcact cttccactta\n",
        "    27361 tatagagtgc acttatatta gccgttttag taagattagc ctagtttctg taactgactt\n",
        "    27421 ctccttaaac ggcaatgttt ccactgtttt cgtgcctgca acgcgcgatt cagttcctct\n",
        "    27481 tcacataatc gccccgagct cgcttatcgt ttaagcagct ctgcgctact atgggtcccg\n",
        "    27541 tgtagaggct aatccattag tctctctttg gacatatgga aaacgaacta tgttaccctt\n",
        "    27601 tgtccaagaa cgaatagggt tgttcatagt aaactttttc atttttaccg tagtatgtgc\n",
        "    27661 tataacactc ttggtgtgta tggctttcct tacggctact agattatgtg tgcaatgtat\n",
        "    27721 gacaggcttc aataccctgt tagttcagcc cgcattatac ttgtataata ctggacgttc\n",
        "    27781 agtctatgta aaattccagg atagtaaacc ccctctacca cctgacgagt gggtttaacg\n",
        "    27841 aactccttca taatgtctaa tatgacgcaa ctcactgagg cgcagattat tgccattatt\n",
        "    27901 aaagactgga actttgcatg gtccctgatc tttctcttaa ttactatcgt actacagtat\n",
        "    27961 ggatacccat cccgtagtat gactgtctat gtctttaaaa tgtttgtttt atggctccta\n",
        "    28021 tggccatctt ccatggcgct atcaatattt agcgccattt atccaattga tctagcttcc\n",
        "    28081 cagataatct ctggcattgt agcagctgtt tcagctatga tgtggatttc ctactttgtg\n",
        "    28141 cagagtatcc ggctgtttat gagaactgga tcatggtggt cattcaatcc tgagactaat\n",
        "    28201 tgccttttga acgttccatt tggtggtaca actgtcgtac gtccactcgt agaggactct\n",
        "    28261 accagtgtaa ctgctgttgt aaccaatggc cacctcaaaa tggctggcat gcatttcggt\n",
        "    28321 gcttgtgact acgacagact tcctaatgaa gtcaccgtgg ccaaacccaa tgtgctgatt\n",
        "    28381 gctttaaaaa tggtgaagcg gcaaagctac ggaactaatt ccggcgttgc catttaccat\n",
        "    28441 agatataagg caggtaatta caggagtccg cctattacgg cggatattga acttgcattg\n",
        "    28501 cttcgagctt aggctcttta gtaagagtat cttaattgat tttaacgaat ctcaatttca\n",
        "    28561 ttgttatggc atcccctgct gcacctcgtg ctgtttcctt tgccgataac aatgatataa\n",
        "    28621 caaatacaaa cctgtctcga ggtagaggac gtaatccaaa accacgagct gcaccaaata\n",
        "    28681 acactgtctc ttggtacact gggcttaccc aacacgggaa agtccctctt acctttccac\n",
        "    28741 ctgggcaggg tgtacctctt aatgccaatt ccaccccagc gcaaaatgct gggtattggc\n",
        "    28801 ggagacagga cagaaaaatt aataccggga atggaattaa gcaactggct cccaggtggt\n",
        "    28861 acttctacta cactggaacc ggacccgaag cagcactccc attccgggct gttaaggatg\n",
        "    28921 gcatcgtttg ggtccatgaa catggcgcca ctgatgctcc ttcaactttt gggacgcgga\n",
        "    28981 accctaacaa tgattcagct attgttacac aattcgcgcc cggtactaag cttcctaaaa\n",
        "    29041 acttccacat tgaggggact ggaggcaata gtcaatcatc ttcaagagcc tctagcgtaa\n",
        "    29101 gcagaaactc ttccagatct agttcacaag gttcaagatc aggaaactct acccgcggca\n",
        "    29161 cttctccagg tccatctgga atcggagcag taggaggtga tctactttac cttgatcttc\n",
        "    29221 tgaacagact acaagccctt gagtctggca aagtaaagca atcgcagcca aaagtaatca\n",
        "    29281 ctaagaaaga tgctgctgct gctaaaaata agatgcgcca caagcgcact tccaccaaaa\n",
        "    29341 gtttcaacat ggtgcaagct tttggtcttc gcggaccagg agacctccag ggaaactttg\n",
        "    29401 gtgatcttca attgaataaa ctcggcactg aggacccacg ttggccccaa attgctgagc\n",
        "    29461 ttgctcctac agccagtgct tttatgggta tgtcgcaatt taaacttacc catcagaaca\n",
        "    29521 atgatgatca tggcaaccct gtgtacttcc ttcggtacag tggagccatt aaacttgacc\n",
        "    29581 caaagaatcc caactacaat aagtggttgg agcttcttga gcaaaatatt gatgcctaca\n",
        "    29641 aaaccttccc taagaaggaa aagaaacaaa aggcaccaaa agaagaatca acagaccaaa\n",
        "    29701 tgtctgaacc tcctaaggag cagcgtgtgc aaggtagcat cactcagcgc actcgcaccc\n",
        "    29761 gtccaagtgt tcagcctggt ccaatgattg atgttaacac tgattagtgt cactcaaagt\n",
        "    29821 aacaagatcg cggcaatcgt ttgtgtttgg taaccccatc tcaccatcgc ttgtccactc\n",
        "    29881 ttgcacagaa tggaatcatg ttgtaattac agtgcaataa ggtaattata acccatttaa\n",
        "    29941 ttgatagcta tgctttatta aagtgtgtag ctgtagagag aatgttaaag actgtcacct\n",
        "    30001 ctgcctgatt gcaagtgaac agtgcccccc gggaagagct ctacagtgtg aaatgtaaat\n",
        "    30061 aaaaatagct attattcaat tagattaggc taattagatg atttgcaaaa aaaaaaaaaa\n",
        "    30121 aaa\n",
        "\"\"\"\n"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "zXFbwcFru1OL"
      },
      "source": [
        "for s in \" \\n0123456789\":\n",
        "    corona = corona.replace(s, \"\")\n",
        "    corona\n"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "tYGdMfZmu4xi",
        "colab": {
          "base_uri": "https://localhost:8080/",
          "height": 1000
        },
        "outputId": "ac94dfd8-9a47-48d5-d606-12a8b28e8050"
      },
      "source": [
        "corona"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "execute_result",
          "data": {
            "application/vnd.google.colaboratory.intrinsic+json": {
              "type": "string"
            },
            "text/plain": [
              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ctctgcctgattgcaagtgaacagtgccccccgggaagagctctacagtgtgaaatgtaaataaaaatagctattattcaattagattaggctaattagatgatttgcaaaaaaaaaaaaaaaaa'"
            ]
          },
          "metadata": {
            "tags": []
          },
          "execution_count": 12
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "Z2sGou1Ru6Pi",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "e50410fb-3525-4317-96fb-baec05d4e5e4"
      },
      "source": [
        "!unzip /content/SARS2-all.zip"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Archive:  /content/SARS2-all.zip\n",
            "  inflating: README.md               \n",
            "  inflating: ncbi_dataset/data/cds.fna  \n",
            "  inflating: ncbi_dataset/data/genomic.fna  \n",
            "  inflating: ncbi_dataset/data/protein.faa  \n",
            "  inflating: ncbi_dataset/data/protein.gpff  \n",
            "  inflating: ncbi_dataset/data/data_report.jsonl  \n",
            "  inflating: ncbi_dataset/data/virus_dataset.md  \n",
            "  inflating: ncbi_dataset/data/pdb/6VYB.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6VYO.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6W37.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6W4H.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6W9C.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6W9Q.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6WEY.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6WJI.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/6WLC.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/7BQY.pdb  \n",
            "  inflating: ncbi_dataset/data/pdb/7BV2.pdb  \n",
            "  inflating: ncbi_dataset/data/dataset_catalog.json  \n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "QLimQKU_vFxp"
      },
      "source": [
        ""
      ],
      "execution_count": null,
      "outputs": []
    }
  ]
}