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NEWS.md

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wallace 1.0.3

  • Added error checks for when the coordinate reference system (CRS) of an input user raster is NA, and updated guidance text in the User-specified Environmental Data module with a guide on configuring the CRS of rasters in R.
  • Fixed a bug that prevented downloads of 30 arcsec Worldclim rasters.
  • Updated the intro screen tab module names.

wallace 1.0.2

  • There is now an option to download all the response curves at once in the same png.
  • Local path to dismo's maxent.jar is now printed inside the log window to avoid failure to word wrap in some browsers.
  • Component 2 module "Select Occs" now informs user of the occIDs of points removed, not of the ones retained.

wallace 1.0.1

  • Removed button used for development.

wallace 1.0.0

  • Biggest change: reprogrammed most of the software to integrate shiny modules. Now each module is a separate script in /inst/shiny/modules that contains both UI and server logic. This should make authorship and integration of new modules much easier.
  • Second biggest change: integrated leaflet draw toolbar functionality from leaflet.extras package, which replaces the previous code to draw and internally record polygons in comps 2 and 7. The code is much cleaner now and easier to make edits to.
  • By popular demand, added user-input environmental variables module. This is a work in progress, so please report bugs to Issues on Github.
  • Added buffer by points feature for background extent module (comp4).
  • Added cloglog output option for Maxent (updated for Maxent version 3.4x) in map prediction module (comp7).
  • Partition occurrences modules (comp5) now plot on the map with a legend showing the partition group per color.
  • Maxent models now show the evaluation statistics for all partition groups (ENMevaluate() option bin.output=TRUE) -- the partition group numbers correspond to the comp5 legend.
  • Unit tests are now available for all modules in two flavors: 1) control tests run automatically via Travis with each Github push, which test that the UI buttons, forms, etc. are functioning properly; and 2) function tests which run Wallace as a user would by pushing buttons and entering fields, and as these tests take more than 5 minutes to complete, they are not automatically run for now. Unit tests will be a signature part of module contribution.
  • Updated guidance text.

wallace 0.6.4

  • Added explicit package references to writeRaster() calls. Should work now without loading raster package first.
  • Fixed reference to required field names in component 1 User Occurrences module guidance text. Now reads "names" instead of "species" as first field.
  • Added checks for appropriate fields for VertNet and BISON, as not all downloads include all fields. Should avoid erroring due to missing fields now.

wallace 0.6.3

  • Added repmis and rgdal to package dependencies.
  • Turned off evaluation of chunk that loads packages in userReport.Rmd.
  • Added error catches to component 5 and 6 if rJava cannot load.

wallace 0.6.2

  • Turned off evaluation of code chunks in userReport.Rmd. Now the building of user session code is much, much faster.
  • Made code compatible with leaflet version 1.0.1. There was a mysterious problem with zooming to points before clearing markers and/or plotting points, which resulted in crashing as soon as points are plotted unless the user had the Github master version of leaflet installed. Thus the code was rearranged and cleaned to accomodate the current leaflet version on CRAN.
  • Fixed some errors in userReport.Rmd relating to the user .csv path and printing of a couple of headings.