From 7b03c06b13ec0f5184bd5ed21614a2f2baa3a015 Mon Sep 17 00:00:00 2001
From: David Michaels <david_michaels@hms.harvard.edu>
Date: Tue, 23 Apr 2024 16:32:23 -0400
Subject: [PATCH 1/6] Fix calls to get_es_metadata in checks/audit_checks.py to
 work when ES_HOST_LOCAL is set.

---
 CHANGELOG.rst                               |  5 +++
 chalicelib_fourfront/checks/audit_checks.py | 45 +++++++++++++--------
 pyproject.toml                              |  2 +-
 3 files changed, 35 insertions(+), 17 deletions(-)

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 71542749..499adcd6 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -7,6 +7,11 @@ foursight
 Change Log
 ----------
 
+4.4.7
+=====
+* Fix calls to get_es_metadata in checks/audit_checks.py to work when ES_HOST_LOCAL is set.
+
+
 4.4.6
 =====
 * Add organism when ATAC-seq check calls stepper helper
diff --git a/chalicelib_fourfront/checks/audit_checks.py b/chalicelib_fourfront/checks/audit_checks.py
index 715e7e47..1931f096 100644
--- a/chalicelib_fourfront/checks/audit_checks.py
+++ b/chalicelib_fourfront/checks/audit_checks.py
@@ -1,14 +1,16 @@
-from dcicutils import ff_utils
+import datetime
+import os
 import re
 import requests
-import datetime
-from .helpers import wrangler_utils
-
+from typing import Optional
+from dcicutils.es_utils import create_es_client
+from dcicutils import ff_utils
+from chalicelib_fourfront.checks.helpers import wrangler_utils
 # Use confchecks to import decorators object and its methods for each check module
 # rather than importing check_function, action_function, CheckResult, ActionResult
 # individually - they're now part of class Decorators in foursight-core::decorators
 # that requires initialization with foursight prefix.
-from .helpers.confchecks import *
+from chalicelib_fourfront.checks.helpers.confchecks import *
 
 
 STATUS_LEVEL = {
@@ -598,7 +600,7 @@ def check_status_mismatch(connection, **kwargs):
     else:
         itemres = ff_utils.search_metadata(item_search, key=connection.ff_keys, page_limit=500)
         itemids = [item.get('uuid') for item in itemres]
-    es_items = ff_utils.get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
+    es_items = _get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
     for es_item in es_items:
         label = es_item.get('embedded').get('display_title')
         desc = es_item.get('object').get('description')
@@ -629,8 +631,8 @@ def check_status_mismatch(connection, **kwargs):
                     mismatches.setdefault(iid, []).append(lid)
 
         if len(linked2get) > MIN_CHUNK_SIZE or i + 1 == len(itemids):  # only query es when we have more than a set number of ids (500)
-            linked2chk = ff_utils.get_es_metadata(list(linked2get.keys()), key=connection.ff_keys,
-                                                  chunk_size=200, is_generator=True)
+            linked2chk = _get_es_metadata(list(linked2get.keys()), key=connection.ff_keys,
+                                          chunk_size=200, is_generator=True)
             for litem in linked2chk:
                 luuid = litem.get('uuid')
                 listatus = litem.get('properties').get('status', 'in review by lab')
@@ -704,17 +706,17 @@ def check_opf_status_mismatch(connection, **kwargs):
                 for case in exp['other_processed_files']:
                     files.extend([i['uuid'] for i in case['files']])
     # get metadata for files, to collect status
-    resp = ff_utils.get_es_metadata(list(set(files)),
-                                    sources=['links.quality_metric', 'object.status', 'uuid'],
-                                    key=connection.ff_keys)
+    resp = _get_es_metadata(list(set(files)),
+                            sources=['links.quality_metric', 'object.status', 'uuid'],
+                            key=connection.ff_keys)
     opf_status_dict = {item['uuid']: item['object']['status'] for item in resp if item['uuid'] in files}
     opf_linked_dict = {
         item['uuid']: item.get('links', {}).get('quality_metric', []) for item in resp if item['uuid'] in files
     }
     quality_metrics = [uuid for item in resp for uuid in item.get('links', {}).get('quality_metric', [])]
-    qm_resp = ff_utils.get_es_metadata(list(set(quality_metrics)),
-                                       sources=['uuid', 'object.status'],
-                                       key=connection.ff_keys)
+    qm_resp = _get_es_metadata(list(set(quality_metrics)),
+                               sources=['uuid', 'object.status'],
+                               key=connection.ff_keys)
     opf_other_dict = {item['uuid']: item['object']['status'] for item in qm_resp if item not in files}
     check.full_output = {}
     for result in results:
@@ -885,8 +887,8 @@ def check_bio_feature_organism_name(connection, **kwargs):
                             assembly_in_dt = True
                             break
                     if not assembly_in_dt:
-                        gr_res = ff_utils.get_es_metadata([genreg.get('uuid')],
-                                                          key=connection.ff_keys, sources=['properties.genome_assembly'])
+                        gr_res = _get_es_metadata([genreg.get('uuid')],
+                                                  key=connection.ff_keys, sources=['properties.genome_assembly'])
                         try:
                             gr_ass = gr_res[0].get('properties').get('genome_assembly')
                         except AttributeError:
@@ -1248,3 +1250,14 @@ def chipseq_target_missing_tag(connection, **kwargs):
         check.description = 'All BioFeatures that are targets of ChIP-seq have appropriate tags'
 
     return check
+
+
+def _get_es_host_local() -> Optional[str]:
+    return os.environ.get("ES_HOST_LOCAL", None)
+
+
+def _get_es_metadata(*args, **kwargs):
+    if (kwargs.get("es_client", None) is None) and ((es_host_local := _get_es_host_local()) is not None):
+        es_client = create_es_client(es_host_local, use_aws_auth=True)
+        return ff_utils.get_es_metadata(*args, **kwargs, es_client=es_client)
+    return ff_utils.get_es_metadata(*args, **kwargs)
diff --git a/pyproject.toml b/pyproject.toml
index 2e374a01..01956d2f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "foursight"
-version = "4.4.6"
+version = "4.4.7"
 description = "Serverless Chalice Application for Monitoring"
 authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
 license = "MIT"

From 34d8a4984afa43d917a5068f3d7908a04f518479 Mon Sep 17 00:00:00 2001
From: David Michaels <david_michaels@hms.harvard.edu>
Date: Tue, 23 Apr 2024 17:10:38 -0400
Subject: [PATCH 2/6] Fix calls to get_es_metadata in checks/audit_checks.py to
 work when ES_HOST_LOCAL is set.

---
 chalicelib_fourfront/checks/audit_checks.py   |   34 +-
 .../checks/helpers/es_utils.py                |   13 +
 chalicelib_fourfront/checks/system_checks.py  |    4 +-
 .../checks/wrangler_checks.py                 |    3 +-
 poetry.lock                                   | 1157 +++++++++++------
 pyproject.toml                                |    4 +-
 6 files changed, 780 insertions(+), 435 deletions(-)
 create mode 100644 chalicelib_fourfront/checks/helpers/es_utils.py

diff --git a/chalicelib_fourfront/checks/audit_checks.py b/chalicelib_fourfront/checks/audit_checks.py
index 1931f096..1fd6e7d0 100644
--- a/chalicelib_fourfront/checks/audit_checks.py
+++ b/chalicelib_fourfront/checks/audit_checks.py
@@ -6,6 +6,7 @@
 from dcicutils.es_utils import create_es_client
 from dcicutils import ff_utils
 from chalicelib_fourfront.checks.helpers import wrangler_utils
+from chalicelib_fourfront.checks.helpers.es_utils import get_es_metadata
 # Use confchecks to import decorators object and its methods for each check module
 # rather than importing check_function, action_function, CheckResult, ActionResult
 # individually - they're now part of class Decorators in foursight-core::decorators
@@ -600,7 +601,7 @@ def check_status_mismatch(connection, **kwargs):
     else:
         itemres = ff_utils.search_metadata(item_search, key=connection.ff_keys, page_limit=500)
         itemids = [item.get('uuid') for item in itemres]
-    es_items = _get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
+    es_items = get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
     for es_item in es_items:
         label = es_item.get('embedded').get('display_title')
         desc = es_item.get('object').get('description')
@@ -631,8 +632,8 @@ def check_status_mismatch(connection, **kwargs):
                     mismatches.setdefault(iid, []).append(lid)
 
         if len(linked2get) > MIN_CHUNK_SIZE or i + 1 == len(itemids):  # only query es when we have more than a set number of ids (500)
-            linked2chk = _get_es_metadata(list(linked2get.keys()), key=connection.ff_keys,
-                                          chunk_size=200, is_generator=True)
+            linked2chk = get_es_metadata(list(linked2get.keys()), key=connection.ff_keys,
+                                         chunk_size=200, is_generator=True)
             for litem in linked2chk:
                 luuid = litem.get('uuid')
                 listatus = litem.get('properties').get('status', 'in review by lab')
@@ -706,17 +707,17 @@ def check_opf_status_mismatch(connection, **kwargs):
                 for case in exp['other_processed_files']:
                     files.extend([i['uuid'] for i in case['files']])
     # get metadata for files, to collect status
-    resp = _get_es_metadata(list(set(files)),
-                            sources=['links.quality_metric', 'object.status', 'uuid'],
-                            key=connection.ff_keys)
+    resp = get_es_metadata(list(set(files)),
+                           sources=['links.quality_metric', 'object.status', 'uuid'],
+                           key=connection.ff_keys)
     opf_status_dict = {item['uuid']: item['object']['status'] for item in resp if item['uuid'] in files}
     opf_linked_dict = {
         item['uuid']: item.get('links', {}).get('quality_metric', []) for item in resp if item['uuid'] in files
     }
     quality_metrics = [uuid for item in resp for uuid in item.get('links', {}).get('quality_metric', [])]
-    qm_resp = _get_es_metadata(list(set(quality_metrics)),
-                               sources=['uuid', 'object.status'],
-                               key=connection.ff_keys)
+    qm_resp = get_es_metadata(list(set(quality_metrics)),
+                              sources=['uuid', 'object.status'],
+                              key=connection.ff_keys)
     opf_other_dict = {item['uuid']: item['object']['status'] for item in qm_resp if item not in files}
     check.full_output = {}
     for result in results:
@@ -887,8 +888,8 @@ def check_bio_feature_organism_name(connection, **kwargs):
                             assembly_in_dt = True
                             break
                     if not assembly_in_dt:
-                        gr_res = _get_es_metadata([genreg.get('uuid')],
-                                                  key=connection.ff_keys, sources=['properties.genome_assembly'])
+                        gr_res = get_es_metadata([genreg.get('uuid')],
+                                                 key=connection.ff_keys, sources=['properties.genome_assembly'])
                         try:
                             gr_ass = gr_res[0].get('properties').get('genome_assembly')
                         except AttributeError:
@@ -1250,14 +1251,3 @@ def chipseq_target_missing_tag(connection, **kwargs):
         check.description = 'All BioFeatures that are targets of ChIP-seq have appropriate tags'
 
     return check
-
-
-def _get_es_host_local() -> Optional[str]:
-    return os.environ.get("ES_HOST_LOCAL", None)
-
-
-def _get_es_metadata(*args, **kwargs):
-    if (kwargs.get("es_client", None) is None) and ((es_host_local := _get_es_host_local()) is not None):
-        es_client = create_es_client(es_host_local, use_aws_auth=True)
-        return ff_utils.get_es_metadata(*args, **kwargs, es_client=es_client)
-    return ff_utils.get_es_metadata(*args, **kwargs)
diff --git a/chalicelib_fourfront/checks/helpers/es_utils.py b/chalicelib_fourfront/checks/helpers/es_utils.py
new file mode 100644
index 00000000..6ce730d9
--- /dev/null
+++ b/chalicelib_fourfront/checks/helpers/es_utils.py
@@ -0,0 +1,13 @@
+import os
+from dcicutils.es_utils import create_es_client
+from dcicutils import ff_utils
+
+def get_es_metadata(*args, **kwargs):
+    if (kwargs.get("es_client", None) is None) and ((es_host_local := _get_es_host_local()) is not None):
+        es_client = create_es_client(es_host_local, use_aws_auth=True)
+        return ff_utils.get_es_metadata(*args, **kwargs, es_client=es_client)
+    return ff_utils.get_es_metadata(*args, **kwargs)
+
+
+def _get_es_host_local() -> Optional[str]:
+    return os.environ.get("ES_HOST_LOCAL", None)
diff --git a/chalicelib_fourfront/checks/system_checks.py b/chalicelib_fourfront/checks/system_checks.py
index ba70e1d4..20594a8c 100644
--- a/chalicelib_fourfront/checks/system_checks.py
+++ b/chalicelib_fourfront/checks/system_checks.py
@@ -15,6 +15,7 @@
     beanstalk_utils,
     env_utils
 )
+from chalicelib_fourfront.checks.helpers.es_utils import get_es_metadata
 
 # Use confchecks to import decorators object and its methods for each check module
 # rather than importing check_function, action_function, CheckResult, ActionResult
@@ -833,8 +834,7 @@ def purge_download_tracking_items(connection, **kwargs):
     client = es_utils.create_es_client(connection.ff_es, True)
     # a bit convoluted, but we want the frame=raw, which does not include uuid
     # use get_es_metadata to handle this. Use it as a generator
-    for to_purge in ff_utils.get_es_metadata(search_uuids, es_client=client, is_generator=True,
-                                             key=connection.ff_keys):
+    for to_purge in get_es_metadata(search_uuids, es_client=client, is_generator=True, key=connection.ff_keys):
         if round(time.time() - t0, 2) > time_limit:
             break
         purge_properties = to_purge['properties']
diff --git a/chalicelib_fourfront/checks/wrangler_checks.py b/chalicelib_fourfront/checks/wrangler_checks.py
index ff4a4eaa..4967ad4b 100644
--- a/chalicelib_fourfront/checks/wrangler_checks.py
+++ b/chalicelib_fourfront/checks/wrangler_checks.py
@@ -16,6 +16,7 @@
 from .check_utils import convert_table_to_ordered_dict
 from collections import OrderedDict
 import uuid
+from chalicelib_fourfront.checks.helpers.es_utils import get_es_metadata
 
 # Use confchecks to import decorators object and its methods for each check module
 # rather than importing check_function, action_function, CheckResult, ActionResult
@@ -2123,7 +2124,7 @@ def check_opf_lab_different_than_experiment(connection, **kwargs):
         exp_set_uuids_to_check.extend([uuid for uuid in opf['exp_set_uuids'] if uuid not in exp_set_uuids_to_check])
 
     # get lab of Exp/ExpSet
-    result_exp_set = ff_utils.get_es_metadata(exp_set_uuids_to_check, sources=['uuid', 'properties.lab'], key=connection.ff_keys)
+    result_exp_set = get_es_metadata(exp_set_uuids_to_check, sources=['uuid', 'properties.lab'], key=connection.ff_keys)
     es_uuid_2_lab = {}  # map Exp/Set uuid to Exp/Set lab
     for es in result_exp_set:
         es_uuid_2_lab[es['uuid']] = es['properties']['lab']
diff --git a/poetry.lock b/poetry.lock
index 9db15e74..2b3dcd39 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
 
 [[package]]
 name = "annotated-types"
 version = "0.6.0"
 description = "Reusable constraint types to use with typing.Annotated"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -19,7 +18,6 @@ typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.9\""}
 name = "ansicon"
 version = "1.89.0"
 description = "Python wrapper for loading Jason Hood's ANSICON"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -31,7 +29,6 @@ files = [
 name = "async-timeout"
 version = "4.0.3"
 description = "Timeout context manager for asyncio programs"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -39,11 +36,29 @@ files = [
     {file = "async_timeout-4.0.3-py3-none-any.whl", hash = "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"},
 ]
 
+[[package]]
+name = "attrs"
+version = "23.2.0"
+description = "Classes Without Boilerplate"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
+    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
+]
+
+[package.extras]
+cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
+dev = ["attrs[tests]", "pre-commit"]
+docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
+tests = ["attrs[tests-no-zope]", "zope-interface"]
+tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
+tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
+
 [[package]]
 name = "aws-requests-auth"
 version = "0.4.3"
 description = "AWS signature version 4 signing process for the python requests module"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -58,7 +73,6 @@ requests = ">=0.14.0"
 name = "backports-zoneinfo"
 version = "0.2.1"
 description = "Backport of the standard library zoneinfo module"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -87,7 +101,6 @@ tzdata = ["tzdata"]
 name = "beautifulsoup4"
 version = "4.12.3"
 description = "Screen-scraping library"
-category = "main"
 optional = false
 python-versions = ">=3.6.0"
 files = [
@@ -109,7 +122,6 @@ lxml = ["lxml"]
 name = "benchmark-4dn"
 version = "0.5.23"
 description = "Benchmark functions that returns total space, mem, cpu given input size and parameters for the CWL workflows"
-category = "main"
 optional = false
 python-versions = ">=3.5,<4.0"
 files = [
@@ -121,7 +133,6 @@ files = [
 name = "blessed"
 version = "1.20.0"
 description = "Easy, practical library for making terminal apps, by providing an elegant, well-documented interface to Colors, Keyboard input, and screen Positioning capabilities."
-category = "dev"
 optional = false
 python-versions = ">=2.7"
 files = [
@@ -136,18 +147,17 @@ wcwidth = ">=0.1.4"
 
 [[package]]
 name = "boto3"
-version = "1.34.64"
+version = "1.34.90"
 description = "The AWS SDK for Python"
-category = "main"
 optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
-    {file = "boto3-1.34.64-py3-none-any.whl", hash = "sha256:8c6fbd3d45399a4e4685010117fb2dc52fc6afdab5a9460957d463ae0c2cc55d"},
-    {file = "boto3-1.34.64.tar.gz", hash = "sha256:e5d681f443645e6953ed0727bf756bf16d85efefcb69cf051d04a070ce65e545"},
+    {file = "boto3-1.34.90-py3-none-any.whl", hash = "sha256:b2e5cb5b95efcc881e25a3bc872d7a24e75ff4e76f368138e4baf7b9d6ee3422"},
+    {file = "boto3-1.34.90.tar.gz", hash = "sha256:2824e3dd18743ca50e5b10439d20e74647b1416e8a94509cb30beac92d27a18d"},
 ]
 
 [package.dependencies]
-botocore = ">=1.34.64,<1.35.0"
+botocore = ">=1.34.90,<1.35.0"
 jmespath = ">=0.7.1,<2.0.0"
 s3transfer = ">=0.10.0,<0.11.0"
 
@@ -156,14 +166,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 
 [[package]]
 name = "botocore"
-version = "1.34.64"
+version = "1.34.90"
 description = "Low-level, data-driven core of boto 3."
-category = "main"
 optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
-    {file = "botocore-1.34.64-py3-none-any.whl", hash = "sha256:0ab760908749fe82325698591c49755a5bb20307d85a419aca9cc74e783b9407"},
-    {file = "botocore-1.34.64.tar.gz", hash = "sha256:084f8c45216d62dc1add2350e236a2d5283526aacd0681e9818b37a6a5e5438b"},
+    {file = "botocore-1.34.90-py3-none-any.whl", hash = "sha256:d48f152498e2c60b43ce25b579d26642346a327b6fb2c632d57219e0a4f63392"},
+    {file = "botocore-1.34.90.tar.gz", hash = "sha256:113cd4c0cb63e13163ccbc2bb13d551be314ba7f8ba5bfab1c51a19ca01aa133"},
 ]
 
 [package.dependencies]
@@ -175,13 +184,12 @@ urllib3 = [
 ]
 
 [package.extras]
-crt = ["awscrt (==0.19.19)"]
+crt = ["awscrt (==0.20.9)"]
 
 [[package]]
 name = "cachetools"
 version = "5.3.3"
 description = "Extensible memoizing collections and decorators"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -193,7 +201,6 @@ files = [
 name = "certifi"
 version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -205,7 +212,6 @@ files = [
 name = "cffi"
 version = "1.16.0"
 description = "Foreign Function Interface for Python calling C code."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -270,7 +276,6 @@ pycparser = "*"
 name = "chalice"
 version = "1.31.0"
 description = "Microframework"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -294,11 +299,21 @@ cdk = ["aws-cdk.aws-iam (>=1.85.0,<2.0)", "aws-cdk.aws-s3-assets (>=1.85.0,<2.0)
 cdkv2 = ["aws-cdk-lib (>2.0,<3.0)"]
 event-file-poller = ["watchdog (==2.3.1)"]
 
+[[package]]
+name = "chardet"
+version = "5.2.0"
+description = "Universal encoding detector for Python 3"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
+    {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
+]
+
 [[package]]
 name = "charset-normalizer"
 version = "2.0.12"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
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+    {file = "coverage-7.5.0-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:ced268e82af993d7801a9db2dbc1d2322e786c5dc76295d8e89473d46c6b84d4"},
+    {file = "coverage-7.5.0-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:e7c211f25777746d468d76f11719e64acb40eed410d81c26cefac641975beb88"},
+    {file = "coverage-7.5.0-cp38-cp38-win32.whl", hash = "sha256:262fffc1f6c1a26125d5d573e1ec379285a3723363f3bd9c83923c9593a2ac25"},
+    {file = "coverage-7.5.0-cp38-cp38-win_amd64.whl", hash = "sha256:eed462b4541c540d63ab57b3fc69e7d8c84d5957668854ee4e408b50e92ce26a"},
+    {file = "coverage-7.5.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:d0194d654e360b3e6cc9b774e83235bae6b9b2cac3be09040880bb0e8a88f4a1"},
+    {file = "coverage-7.5.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:33c020d3322662e74bc507fb11488773a96894aa82a622c35a5a28673c0c26f5"},
+    {file = "coverage-7.5.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0cbdf2cae14a06827bec50bd58e49249452d211d9caddd8bd80e35b53cb04631"},
+    {file = "coverage-7.5.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:3235d7c781232e525b0761730e052388a01548bd7f67d0067a253887c6e8df46"},
+    {file = "coverage-7.5.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:db2de4e546f0ec4b2787d625e0b16b78e99c3e21bc1722b4977c0dddf11ca84e"},
+    {file = "coverage-7.5.0-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:4d0e206259b73af35c4ec1319fd04003776e11e859936658cb6ceffdeba0f5be"},
+    {file = "coverage-7.5.0-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:2055c4fb9a6ff624253d432aa471a37202cd8f458c033d6d989be4499aed037b"},
+    {file = "coverage-7.5.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:075299460948cd12722a970c7eae43d25d37989da682997687b34ae6b87c0ef0"},
+    {file = "coverage-7.5.0-cp39-cp39-win32.whl", hash = "sha256:280132aada3bc2f0fac939a5771db4fbb84f245cb35b94fae4994d4c1f80dae7"},
+    {file = "coverage-7.5.0-cp39-cp39-win_amd64.whl", hash = "sha256:c58536f6892559e030e6924896a44098bc1290663ea12532c78cef71d0df8493"},
+    {file = "coverage-7.5.0-pp38.pp39.pp310-none-any.whl", hash = "sha256:2b57780b51084d5223eee7b59f0d4911c31c16ee5aa12737c7a02455829ff067"},
+    {file = "coverage-7.5.0.tar.gz", hash = "sha256:cf62d17310f34084c59c01e027259076479128d11e4661bb6c9acb38c5e19bb8"},
 ]
 
 [package.dependencies]
@@ -405,7 +417,6 @@ toml = ["tomli"]
 name = "cron-descriptor"
 version = "1.4.3"
 description = "A Python library that converts cron expressions into human readable strings."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -420,7 +431,6 @@ dev = ["polib"]
 name = "cryptography"
 version = "39.0.2"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -464,27 +474,31 @@ tox = ["tox"]
 
 [[package]]
 name = "dcicutils"
-version = "8.0.0"
+version = "8.8.4"
 description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
-category = "main"
 optional = false
-python-versions = ">=3.8,<3.12"
+python-versions = "<3.12,>=3.8"
 files = [
-    {file = "dcicutils-8.0.0-py3-none-any.whl", hash = "sha256:339834dd93a70fdc26d1c552273c1390275ba637583bbec41a4a8035270b0c72"},
-    {file = "dcicutils-8.0.0.tar.gz", hash = "sha256:50aafbe2dce173bb6779184be0db8497d818a41b62bd686851cf64de507c5b76"},
+    {file = "dcicutils-8.8.4-py3-none-any.whl", hash = "sha256:c1c60e93f1a2bc9fadd3da040964f068f535659f3e8158a1175844a68dc459bc"},
+    {file = "dcicutils-8.8.4.tar.gz", hash = "sha256:8a86768a3aeaa1f43d5ed40053aa5e5d2ef58561a1db201d342f4ea9d19df9e9"},
 ]
 
 [package.dependencies]
 aws-requests-auth = ">=0.4.2,<1"
 boto3 = ">=1.28.57,<2.0.0"
 botocore = ">=1.31.57,<2.0.0"
+chardet = ">=5.2.0,<6.0.0"
 docker = ">=4.4.4,<5.0.0"
 elasticsearch = "7.13.4"
 gitpython = ">=3.1.2,<4.0.0"
 jsonc-parser = ">=1.1.5,<2.0.0"
+jsonschema = ">=4.19.0,<5.0.0"
+openpyxl = ">=3.1.2,<4.0.0"
 opensearch-py = ">=2.0.1,<3.0.0"
 PyJWT = ">=2.6.0,<3.0.0"
 pyOpenSSL = ">=23.1.1,<24.0.0"
+pyperclip = ">=1.8.2,<2.0.0"
+pyramid = "1.10.4"
 pytz = ">=2020.4"
 PyYAML = ">=6.0.1,<7.0.0"
 redis = ">=4.5.1,<5.0.0"
@@ -492,7 +506,7 @@ requests = ">=2.21.0,<3.0.0"
 rfc3986 = ">=1.4.0,<2.0.0"
 structlog = ">=19.2.0,<20.0.0"
 toml = ">=0.10.1,<1"
-tqdm = ">=4.65.0,<5.0.0"
+tqdm = ">=4.66.2,<5.0.0"
 typing-extensions = ">=3.8"
 urllib3 = ">=1.26.6,<2.0.0"
 webtest = ">=2.0.34,<3.0.0"
@@ -501,7 +515,6 @@ webtest = ">=2.0.34,<3.0.0"
 name = "decorator"
 version = "5.1.1"
 description = "Decorators for Humans"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -513,7 +526,6 @@ files = [
 name = "docker"
 version = "4.4.4"
 description = "A Python library for the Docker Engine API."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -535,19 +547,14 @@ tls = ["cryptography (>=1.3.4)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"]
 name = "docutils"
 version = "0.20.1"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"},
-    {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"},
-]
+python-versions = "*"
+files = []
 
 [[package]]
 name = "elasticsearch"
 version = "7.13.4"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
 files = [
@@ -569,7 +576,6 @@ requests = ["requests (>=2.4.0,<3.0.0)"]
 name = "elasticsearch-dsl"
 version = "7.4.1"
 description = "Python client for Elasticsearch"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -585,16 +591,26 @@ six = "*"
 [package.extras]
 develop = ["coverage (<5.0.0)", "mock", "pytest (>=3.0.0)", "pytest-cov", "pytest-mock (<3.0.0)", "pytz", "sphinx", "sphinx-rtd-theme"]
 
+[[package]]
+name = "et-xmlfile"
+version = "1.1.0"
+description = "An implementation of lxml.xmlfile for the standard library"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
+    {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
+]
+
 [[package]]
 name = "exceptiongroup"
-version = "1.2.0"
+version = "1.2.1"
 description = "Backport of PEP 654 (exception groups)"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "exceptiongroup-1.2.0-py3-none-any.whl", hash = "sha256:4bfd3996ac73b41e9b9628b04e079f193850720ea5945fc96a08633c66912f14"},
-    {file = "exceptiongroup-1.2.0.tar.gz", hash = "sha256:91f5c769735f051a4290d52edd0858999b57e5876e9f85937691bd4c9fa3ed68"},
+    {file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"},
+    {file = "exceptiongroup-1.2.1.tar.gz", hash = "sha256:a4785e48b045528f5bfe627b6ad554ff32def154f42372786903b7abcfe1aa16"},
 ]
 
 [package.extras]
@@ -604,7 +620,6 @@ test = ["pytest (>=6)"]
 name = "flaky"
 version = "3.6.1"
 description = "Plugin for nose or pytest that automatically reruns flaky tests."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -614,23 +629,22 @@ files = [
 
 [[package]]
 name = "foursight-core"
-version = "5.4.1"
+version = "5.4.2"
 description = "Serverless Chalice Application for Monitoring"
-category = "main"
 optional = false
-python-versions = ">=3.8,<3.12"
+python-versions = "<3.12,>=3.8"
 files = [
-    {file = "foursight_core-5.4.1-py3-none-any.whl", hash = "sha256:e64005ca90193ac3c87473a2230d8a23354aa1c7f961238af50d101522e8c78d"},
-    {file = "foursight_core-5.4.1.tar.gz", hash = "sha256:d81eadd0bf16a19593fd2f5a2cb3e58abc64446b7214077c85ec8dd8c6322edd"},
+    {file = "foursight_core-5.4.2-py3-none-any.whl", hash = "sha256:9e3a450f4cf73cc2536a225d3294fcfba508e316ad7746e7d981b78fb40f72e3"},
+    {file = "foursight_core-5.4.2.tar.gz", hash = "sha256:3c241d5f4190e4c398e1bcb6bce5ade54d85eb4803757635ca24f55fbf6a1f44"},
 ]
 
 [package.dependencies]
-boto3 = ">=1.28.62,<2.0.0"
-botocore = ">=1.31.62,<2.0.0"
+boto3 = ">=1.34.89,<2.0.0"
+botocore = ">=1.34.89,<2.0.0"
 click = ">=7.1.2,<8.0.0"
 cron-descriptor = ">=1.2.31,<2.0.0"
 cryptography = "39.0.2"
-dcicutils = "8.0.0"
+dcicutils = ">=8.8.4,<9.0.0"
 elasticsearch = "7.13.4"
 elasticsearch-dsl = ">=7.0.0,<8.0.0"
 geocoder = "1.38.1"
@@ -641,7 +655,7 @@ google-auth-oauthlib = ">=0.7.0,<0.8.0"
 Jinja2 = ">=3.1.2,<4.0.0"
 MarkupSafe = ">=2.1.3,<3.0.0"
 pyDes = ">=2.0.1,<3.0.0"
-PyJWT = ">=2.5.0,<3.0.0"
+PyJWT = ">=2.8.0,<3.0.0"
 pytz = ">=2020.1"
 redis = ">=4.5.1,<5.0.0"
 toml = ">=0.10.2,<1"
@@ -651,7 +665,6 @@ tzlocal = ">=5.0.1,<6.0.0"
 name = "future"
 version = "1.0.0"
 description = "Clean single-source support for Python 3 and 2"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -663,7 +676,6 @@ files = [
 name = "geocoder"
 version = "1.38.1"
 description = "Geocoder is a simple and consistent geocoding library."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -682,7 +694,6 @@ six = "*"
 name = "gitdb"
 version = "4.0.11"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -695,27 +706,26 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.42"
+version = "3.1.43"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "GitPython-3.1.42-py3-none-any.whl", hash = "sha256:1bf9cd7c9e7255f77778ea54359e54ac22a72a5b51288c457c881057b7bb9ecd"},
-    {file = "GitPython-3.1.42.tar.gz", hash = "sha256:2d99869e0fef71a73cbd242528105af1d6c1b108c60dfabd994bf292f76c3ceb"},
+    {file = "GitPython-3.1.43-py3-none-any.whl", hash = "sha256:eec7ec56b92aad751f9912a73404bc02ba212a23adb2c7098ee668417051a1ff"},
+    {file = "GitPython-3.1.43.tar.gz", hash = "sha256:35f314a9f878467f5453cc1fee295c3e18e52f1b99f10f6cf5b1682e968a9e7c"},
 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
 
 [package.extras]
-test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar"]
+doc = ["sphinx (==4.3.2)", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "sphinxcontrib-applehelp (>=1.0.2,<=1.0.4)", "sphinxcontrib-devhelp (==1.0.2)", "sphinxcontrib-htmlhelp (>=2.0.0,<=2.0.1)", "sphinxcontrib-qthelp (==1.0.3)", "sphinxcontrib-serializinghtml (==1.1.5)"]
+test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "typing-extensions"]
 
 [[package]]
 name = "google"
 version = "3.0.0"
 description = "Python bindings to the Google search engine."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -730,7 +740,6 @@ beautifulsoup4 = "*"
 name = "google-analytics-data"
 version = "0.17.2"
 description = "Google Analytics Data API client library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -739,7 +748,7 @@ files = [
 ]
 
 [package.dependencies]
-google-api-core = {version = ">=1.34.0,<2.0.0 || >=2.11.0,<3.0.0dev", extras = ["grpc"]}
+google-api-core = {version = ">=1.34.0,<2.0.dev0 || >=2.11.dev0,<3.0.0dev", extras = ["grpc"]}
 proto-plus = [
     {version = ">=1.22.0,<2.0.0dev", markers = "python_version < \"3.11\""},
     {version = ">=1.22.2,<2.0.0dev", markers = "python_version >= \"3.11\""},
@@ -748,14 +757,13 @@ protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4
 
 [[package]]
 name = "google-api-core"
-version = "2.17.1"
+version = "2.18.0"
 description = "Google API client core library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-api-core-2.17.1.tar.gz", hash = "sha256:9df18a1f87ee0df0bc4eea2770ebc4228392d8cc4066655b320e2cfccb15db95"},
-    {file = "google_api_core-2.17.1-py3-none-any.whl", hash = "sha256:610c5b90092c360736baccf17bd3efbcb30dd380e7a6dc28a71059edb8bd0d8e"},
+    {file = "google-api-core-2.18.0.tar.gz", hash = "sha256:62d97417bfc674d6cef251e5c4d639a9655e00c45528c4364fbfebb478ce72a9"},
+    {file = "google_api_core-2.18.0-py3-none-any.whl", hash = "sha256:5a63aa102e0049abe85b5b88cb9409234c1f70afcda21ce1e40b285b9629c1d6"},
 ]
 
 [package.dependencies]
@@ -769,6 +777,7 @@ grpcio-status = [
     {version = ">=1.33.2,<2.0.dev0", optional = true, markers = "extra == \"grpc\""},
     {version = ">=1.49.1,<2.0.dev0", optional = true, markers = "python_version >= \"3.11\" and extra == \"grpc\""},
 ]
+proto-plus = ">=1.22.3,<2.0.0dev"
 protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0.dev0"
 requests = ">=2.18.0,<3.0.0.dev0"
 
@@ -781,7 +790,6 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
 name = "google-api-python-client"
 version = "1.12.11"
 description = "Google API Client Library for Python"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
 files = [
@@ -799,14 +807,13 @@ uritemplate = ">=3.0.0,<4dev"
 
 [[package]]
 name = "google-auth"
-version = "2.28.2"
+version = "2.29.0"
 description = "Google Authentication Library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-auth-2.28.2.tar.gz", hash = "sha256:80b8b4969aa9ed5938c7828308f20f035bc79f9d8fb8120bf9dc8db20b41ba30"},
-    {file = "google_auth-2.28.2-py2.py3-none-any.whl", hash = "sha256:9fd67bbcd40f16d9d42f950228e9cf02a2ded4ae49198b27432d0cded5a74c38"},
+    {file = "google-auth-2.29.0.tar.gz", hash = "sha256:672dff332d073227550ffc7457868ac4218d6c500b155fe6cc17d2b13602c360"},
+    {file = "google_auth-2.29.0-py2.py3-none-any.whl", hash = "sha256:d452ad095688cd52bae0ad6fafe027f6a6d6f560e810fec20914e17a09526415"},
 ]
 
 [package.dependencies]
@@ -825,7 +832,6 @@ requests = ["requests (>=2.20.0,<3.0.0.dev0)"]
 name = "google-auth-httplib2"
 version = "0.2.0"
 description = "Google Authentication Library: httplib2 transport"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -841,7 +847,6 @@ httplib2 = ">=0.19.0"
 name = "google-auth-oauthlib"
 version = "0.7.1"
 description = "Google Authentication Library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -860,7 +865,6 @@ tool = ["click (>=6.0.0)"]
 name = "googleapis-common-protos"
 version = "1.63.0"
 description = "Common protobufs used in Google APIs"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -876,98 +880,95 @@ grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 
 [[package]]
 name = "grpcio"
-version = "1.62.1"
+version = "1.62.2"
 description = "HTTP/2-based RPC framework"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "grpcio-1.62.2-cp38-cp38-win_amd64.whl", hash = "sha256:3c3ed41f4d7a3aabf0f01ecc70d6b5d00ce1800d4af652a549de3f7cf35c4abd"},
+    {file = "grpcio-1.62.2-cp39-cp39-linux_armv7l.whl", hash = "sha256:162ccf61499c893831b8437120600290a99c0bc1ce7b51f2c8d21ec87ff6af8b"},
+    {file = "grpcio-1.62.2-cp39-cp39-macosx_10_10_universal2.whl", hash = "sha256:f27246d7da7d7e3bd8612f63785a7b0c39a244cf14b8dd9dd2f2fab939f2d7f1"},
+    {file = "grpcio-1.62.2-cp39-cp39-manylinux_2_17_aarch64.whl", hash = "sha256:2507006c8a478f19e99b6fe36a2464696b89d40d88f34e4b709abe57e1337467"},
+    {file = "grpcio-1.62.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:a90ac47a8ce934e2c8d71e317d2f9e7e6aaceb2d199de940ce2c2eb611b8c0f4"},
+    {file = "grpcio-1.62.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:99701979bcaaa7de8d5f60476487c5df8f27483624f1f7e300ff4669ee44d1f2"},
+    {file = "grpcio-1.62.2-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:af7dc3f7a44f10863b1b0ecab4078f0a00f561aae1edbd01fd03ad4dcf61c9e9"},
+    {file = "grpcio-1.62.2-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:fa63245271920786f4cb44dcada4983a3516be8f470924528cf658731864c14b"},
+    {file = "grpcio-1.62.2-cp39-cp39-win32.whl", hash = "sha256:c6ad9c39704256ed91a1cffc1379d63f7d0278d6a0bad06b0330f5d30291e3a3"},
+    {file = "grpcio-1.62.2-cp39-cp39-win_amd64.whl", hash = "sha256:16da954692fd61aa4941fbeda405a756cd96b97b5d95ca58a92547bba2c1624f"},
+    {file = "grpcio-1.62.2.tar.gz", hash = "sha256:c77618071d96b7a8be2c10701a98537823b9c65ba256c0b9067e0594cdbd954d"},
 ]
 
 [package.extras]
-protobuf = ["grpcio-tools (>=1.62.1)"]
+protobuf = ["grpcio-tools (>=1.62.2)"]
 
 [[package]]
 name = "grpcio-status"
-version = "1.62.1"
+version = "1.62.2"
 description = "Status proto mapping for gRPC"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "grpcio-status-1.62.1.tar.gz", hash = "sha256:3431c8abbab0054912c41df5c72f03ddf3b7a67be8a287bb3c18a3456f96ff77"},
-    {file = "grpcio_status-1.62.1-py3-none-any.whl", hash = "sha256:af0c3ab85da31669f21749e8d53d669c061ebc6ce5637be49a46edcb7aa8ab17"},
+    {file = "grpcio-status-1.62.2.tar.gz", hash = "sha256:62e1bfcb02025a1cd73732a2d33672d3e9d0df4d21c12c51e0bbcaf09bab742a"},
+    {file = "grpcio_status-1.62.2-py3-none-any.whl", hash = "sha256:206ddf0eb36bc99b033f03b2c8e95d319f0044defae9b41ae21408e7e0cda48f"},
 ]
 
 [package.dependencies]
 googleapis-common-protos = ">=1.5.5"
-grpcio = ">=1.62.1"
+grpcio = ">=1.62.2"
 protobuf = ">=4.21.6"
 
 [[package]]
 name = "gspread"
-version = "6.0.2"
+version = "6.1.0"
 description = "Google Spreadsheets Python API"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "gspread-6.0.2-py3-none-any.whl", hash = "sha256:0238ba43f3bd45e7fa96fd206e9ceb73b03c2896eb143d7f4373c6d0cfe6fddf"},
-    {file = "gspread-6.0.2.tar.gz", hash = "sha256:0982beeb07fa3ec4482a3aaa96ca13a1e6b427a0aca4058beab4cdc33c0cbb64"},
+    {file = "gspread-6.1.0-py3-none-any.whl", hash = "sha256:67aa3335cfcbb2625e41b53129433ba779f2890244a4c532624362ce5e022342"},
+    {file = "gspread-6.1.0.tar.gz", hash = "sha256:576b72b628b251d2ee41e02b982d3c714d511d2a5aa3a88e587ed9efc4d6e752"},
 ]
 
 [package.dependencies]
@@ -979,7 +980,6 @@ StrEnum = "0.4.15"
 name = "httplib2"
 version = "0.22.0"
 description = "A comprehensive HTTP client library."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -990,23 +990,54 @@ files = [
 [package.dependencies]
 pyparsing = {version = ">=2.4.2,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.0.2 || >3.0.2,<3.0.3 || >3.0.3,<4", markers = "python_version > \"3.0\""}
 
+[[package]]
+name = "hupper"
+version = "1.12.1"
+description = "Integrated process monitor for developing and reloading daemons."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "hupper-1.12.1-py3-none-any.whl", hash = "sha256:e872b959f09d90be5fb615bd2e62de89a0b57efc037bdf9637fb09cdf8552b19"},
+    {file = "hupper-1.12.1.tar.gz", hash = "sha256:06bf54170ff4ecf4c84ad5f188dee3901173ab449c2608ad05b9bfd6b13e32eb"},
+]
+
+[package.extras]
+docs = ["Sphinx", "pylons-sphinx-themes", "setuptools", "watchdog"]
+testing = ["mock", "pytest", "pytest-cov", "watchdog"]
+
 [[package]]
 name = "idna"
-version = "3.6"
+version = "3.7"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
-    {file = "idna-3.6-py3-none-any.whl", hash = "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"},
-    {file = "idna-3.6.tar.gz", hash = "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca"},
+    {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
+    {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
+]
+
+[[package]]
+name = "importlib-resources"
+version = "6.4.0"
+description = "Read resources from Python packages"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
+    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
 ]
 
+[package.dependencies]
+zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
+
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1018,7 +1049,6 @@ files = [
 name = "inquirer"
 version = "2.10.1"
 description = "Collection of common interactive command line user interfaces, based on Inquirer.js"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1035,7 +1065,6 @@ readchar = ">=3.0.6"
 name = "jinja2"
 version = "3.1.3"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1053,7 +1082,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jinxed"
 version = "1.2.1"
 description = "Jinxed Terminal Library"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1068,7 +1096,6 @@ ansicon = {version = "*", markers = "platform_system == \"Windows\""}
 name = "jmespath"
 version = "1.0.1"
 description = "JSON Matching Expressions"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1080,7 +1107,6 @@ files = [
 name = "jsonc-parser"
 version = "1.1.5"
 description = "A lightweight, native tool for parsing .jsonc files"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1088,11 +1114,48 @@ files = [
     {file = "jsonc_parser-1.1.5-py3-none-any.whl", hash = "sha256:abd1db76a4c6d1733ec7bb5340a89c49cbc878a181a1e7947ee6719eedf2c6cc"},
 ]
 
+[[package]]
+name = "jsonschema"
+version = "4.21.1"
+description = "An implementation of JSON Schema validation for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema-4.21.1-py3-none-any.whl", hash = "sha256:7996507afae316306f9e2290407761157c6f78002dcf7419acb99822143d1c6f"},
+    {file = "jsonschema-4.21.1.tar.gz", hash = "sha256:85727c00279f5fa6bedbe6238d2aa6403bedd8b4864ab11207d07df3cc1b2ee5"},
+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+jsonschema-specifications = ">=2023.03.6"
+pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
+referencing = ">=0.28.4"
+rpds-py = ">=0.7.1"
+
+[package.extras]
+format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+
+[[package]]
+name = "jsonschema-specifications"
+version = "2023.12.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"},
+    {file = "jsonschema_specifications-2023.12.1.tar.gz", hash = "sha256:48a76787b3e70f5ed53f1160d2b81f586e4ca6d1548c5de7085d1682674764cc"},
+]
+
+[package.dependencies]
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+referencing = ">=0.31.0"
+
 [[package]]
 name = "markupsafe"
 version = "2.1.5"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1162,7 +1225,6 @@ files = [
 name = "mirakuru"
 version = "2.5.2"
 description = "Process executor (not only) for tests."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1177,7 +1239,6 @@ psutil = {version = ">=4.0.0", markers = "sys_platform != \"cygwin\""}
 name = "oauth2client"
 version = "4.1.3"
 description = "OAuth 2.0 client library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1196,7 +1257,6 @@ six = ">=1.6.1"
 name = "oauthlib"
 version = "3.2.2"
 description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1209,16 +1269,29 @@ rsa = ["cryptography (>=3.0.0)"]
 signals = ["blinker (>=1.4.0)"]
 signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"]
 
+[[package]]
+name = "openpyxl"
+version = "3.1.2"
+description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "openpyxl-3.1.2-py2.py3-none-any.whl", hash = "sha256:f91456ead12ab3c6c2e9491cf33ba6d08357d802192379bb482f1033ade496f5"},
+    {file = "openpyxl-3.1.2.tar.gz", hash = "sha256:a6f5977418eff3b2d5500d54d9db50c8277a368436f4e4f8ddb1be3422870184"},
+]
+
+[package.dependencies]
+et-xmlfile = "*"
+
 [[package]]
 name = "opensearch-py"
-version = "2.4.2"
+version = "2.5.0"
 description = "Python client for OpenSearch"
-category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,<4,>=2.7"
 files = [
-    {file = "opensearch-py-2.4.2.tar.gz", hash = "sha256:564f175af134aa885f4ced6846eb4532e08b414fff0a7976f76b276fe0e69158"},
-    {file = "opensearch_py-2.4.2-py2.py3-none-any.whl", hash = "sha256:7867319132133e2974c09f76a54eb1d502b989229be52da583d93ddc743ea111"},
+    {file = "opensearch-py-2.5.0.tar.gz", hash = "sha256:0dde4ac7158a717d92a8cd81964cb99705a4b80bcf9258ba195b9a9f23f5226d"},
+    {file = "opensearch_py-2.5.0-py2.py3-none-any.whl", hash = "sha256:cf093a40e272b60663f20417fc1264ac724dcf1e03c1a4542a6b44835b1e6c49"},
 ]
 
 [package.dependencies]
@@ -1226,7 +1299,7 @@ certifi = ">=2022.12.07"
 python-dateutil = "*"
 requests = ">=2.4.0,<3.0.0"
 six = "*"
-urllib3 = ">=1.26.18"
+urllib3 = ">=1.26.18,<2"
 
 [package.extras]
 async = ["aiohttp (>=3,<4)"]
@@ -1238,7 +1311,6 @@ kerberos = ["requests-kerberos"]
 name = "packaging"
 version = "24.0"
 description = "Core utilities for Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1246,11 +1318,26 @@ files = [
     {file = "packaging-24.0.tar.gz", hash = "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"},
 ]
 
+[[package]]
+name = "pastedeploy"
+version = "3.1.0"
+description = "Load, configure, and compose WSGI applications and servers"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "PasteDeploy-3.1.0-py3-none-any.whl", hash = "sha256:76388ad53a661448d436df28c798063108f70e994ddc749540d733cdbd1b38cf"},
+    {file = "PasteDeploy-3.1.0.tar.gz", hash = "sha256:9ddbaf152f8095438a9fe81f82c78a6714b92ae8e066bed418b6a7ff6a095a95"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=1.7.5)", "pylons-sphinx-themes"]
+paste = ["Paste"]
+testing = ["Paste", "pytest", "pytest-cov"]
+
 [[package]]
 name = "pip"
 version = "23.3.2"
 description = "The PyPA recommended tool for installing Python packages."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1258,16 +1345,59 @@ files = [
     {file = "pip-23.3.2.tar.gz", hash = "sha256:7fd9972f96db22c8077a1ee2691b172c8089b17a5652a44494a9ecb0d78f9149"},
 ]
 
+[[package]]
+name = "pkgutil-resolve-name"
+version = "1.3.10"
+description = "Resolve a name to an object."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "pkgutil_resolve_name-1.3.10-py3-none-any.whl", hash = "sha256:ca27cc078d25c5ad71a9de0a7a330146c4e014c2462d9af19c6b828280649c5e"},
+    {file = "pkgutil_resolve_name-1.3.10.tar.gz", hash = "sha256:357d6c9e6a755653cfd78893817c0853af365dd51ec97f3d358a819373bbd174"},
+]
+
+[[package]]
+name = "plaster"
+version = "1.1.2"
+description = "A loader interface around multiple config file formats."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "plaster-1.1.2-py2.py3-none-any.whl", hash = "sha256:42992ab1f4865f1278e2ad740e8ad145683bb4022e03534265528f0c23c0df2d"},
+    {file = "plaster-1.1.2.tar.gz", hash = "sha256:f8befc54bf8c1147c10ab40297ec84c2676fa2d4ea5d6f524d9436a80074ef98"},
+]
+
+[package.extras]
+docs = ["Sphinx", "pylons-sphinx-themes"]
+testing = ["pytest", "pytest-cov"]
+
+[[package]]
+name = "plaster-pastedeploy"
+version = "1.0.1"
+description = "A loader implementing the PasteDeploy syntax to be used by plaster."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "plaster_pastedeploy-1.0.1-py2.py3-none-any.whl", hash = "sha256:ad3550cc744648969ed3b810f33c9344f515ee8d8a8cec18e8f2c4a643c2181f"},
+    {file = "plaster_pastedeploy-1.0.1.tar.gz", hash = "sha256:be262e6d2e41a7264875daa2fe2850cbb0615728bcdc92828fdc72736e381412"},
+]
+
+[package.dependencies]
+PasteDeploy = ">=2.0"
+plaster = ">=0.5"
+
+[package.extras]
+testing = ["pytest", "pytest-cov"]
+
 [[package]]
 name = "pluggy"
-version = "1.4.0"
+version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pluggy-1.4.0-py3-none-any.whl", hash = "sha256:7db9f7b503d67d1c5b95f59773ebb58a8c1c288129a88665838012cfb07b8981"},
-    {file = "pluggy-1.4.0.tar.gz", hash = "sha256:8c85c2876142a764e5b7548e7d9a0e0ddb46f5185161049a79b7e974454223be"},
+    {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
+    {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
 ]
 
 [package.extras]
@@ -1278,7 +1408,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "port-for"
 version = "0.7.2"
 description = "Utility that helps with local TCP ports management. It can find an unused TCP localhost port and remember the association."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1290,7 +1419,6 @@ files = [
 name = "proto-plus"
 version = "1.23.0"
 description = "Beautiful, Pythonic protocol buffers."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1308,7 +1436,6 @@ testing = ["google-api-core[grpc] (>=1.31.5)"]
 name = "protobuf"
 version = "4.25.3"
 description = ""
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1329,7 +1456,6 @@ files = [
 name = "psutil"
 version = "5.9.8"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -1356,58 +1482,54 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
 
 [[package]]
 name = "pyasn1"
-version = "0.5.1"
+version = "0.6.0"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
-category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
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 [package.dependencies]
@@ -1509,7 +1630,6 @@ typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
 name = "pydes"
 version = "2.0.1"
 description = "Pure python implementation of DES and TRIPLE DES encryption algorithm"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1520,7 +1640,6 @@ files = [
 name = "pyjwt"
 version = "2.8.0"
 description = "JSON Web Token implementation in Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1538,7 +1657,6 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"]
 name = "pyopenssl"
 version = "23.2.0"
 description = "Python wrapper module around the OpenSSL library"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1557,7 +1675,6 @@ test = ["flaky", "pretend", "pytest (>=3.0.1)"]
 name = "pyparsing"
 version = "3.1.2"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
-category = "main"
 optional = false
 python-versions = ">=3.6.8"
 files = [
@@ -1568,11 +1685,46 @@ files = [
 [package.extras]
 diagrams = ["jinja2", "railroad-diagrams"]
 
+[[package]]
+name = "pyperclip"
+version = "1.8.2"
+description = "A cross-platform clipboard module for Python. (Only handles plain text for now.)"
+optional = false
+python-versions = "*"
+files = [
+    {file = "pyperclip-1.8.2.tar.gz", hash = "sha256:105254a8b04934f0bc84e9c24eb360a591aaf6535c9def5f29d92af107a9bf57"},
+]
+
+[[package]]
+name = "pyramid"
+version = "1.10.4"
+description = "The Pyramid Web Framework, a Pylons project"
+optional = false
+python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
+files = [
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+    {file = "pyramid-1.10.4.tar.gz", hash = "sha256:d80ccb8cfa550139b50801591d4ca8a5575334adb493c402fce2312f55d07d66"},
+]
+
+[package.dependencies]
+hupper = ">=1.5"
+plaster = "*"
+plaster-pastedeploy = "*"
+setuptools = "*"
+translationstring = ">=0.4"
+venusian = ">=1.0"
+webob = ">=1.8.3"
+"zope.deprecation" = ">=3.5.0"
+"zope.interface" = ">=3.8.0"
+
+[package.extras]
+docs = ["Sphinx (>=1.8.1)", "docutils", "pylons-sphinx-latesturl", "pylons-sphinx-themes (>=1.0.8)", "repoze.sphinx.autointerface", "sphinxcontrib-autoprogram"]
+testing = ["coverage", "nose", "virtualenv", "webtest (>=1.3.1)", "zope.component (>=4.0)"]
+
 [[package]]
 name = "pytest"
 version = "7.4.4"
 description = "pytest: simple powerful testing with Python"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1595,7 +1747,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no
 name = "pytest-cov"
 version = "4.1.0"
 description = "Pytest plugin for measuring coverage."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1614,7 +1765,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale
 name = "pytest-redis"
 version = "3.0.2"
 description = "Redis fixtures and fixture factories for Pytest."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1632,7 +1782,6 @@ redis = ">=3"
 name = "python-dateutil"
 version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 files = [
@@ -1647,7 +1796,6 @@ six = ">=1.5"
 name = "python-editor"
 version = "1.0.4"
 description = "Programmatically open an editor, capture the result."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1660,7 +1808,6 @@ files = [
 name = "python-lambda-4dn"
 version = "0.12.3"
 description = "FORKED for 4dn-dcic. Use to package and deploy lambda functions."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1677,7 +1824,6 @@ docutils = ">=0.14"
 name = "pytz"
 version = "2020.5"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1689,7 +1835,6 @@ files = [
 name = "pywin32"
 version = "227"
 description = "Python for Window Extensions"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1711,7 +1856,6 @@ files = [
 name = "pyyaml"
 version = "6.0.1"
 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1720,7 +1864,6 @@ files = [
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@@ -1728,15 +1871,8 @@ files = [
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-    {file = "PyYAML-6.0.1-cp312-cp312-win_amd64.whl", hash = "sha256:0d3304d8c0adc42be59c5f8a4d9e3d7379e6955ad754aa9d6ab7a398b59dd1df"},
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@@ -1753,7 +1889,6 @@ files = [
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@@ -1761,7 +1896,6 @@ files = [
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@@ -1771,7 +1905,6 @@ files = [
 name = "ratelim"
 version = "0.1.6"
 description = "Makes it easy to respect rate limits."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1786,7 +1919,6 @@ decorator = "*"
 name = "readchar"
 version = "4.0.6"
 description = "Library to easily read single chars and key strokes"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1801,7 +1933,6 @@ setuptools = ">=41.0"
 name = "redis"
 version = "4.6.0"
 description = "Python client for Redis database and key-value store"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1816,11 +1947,25 @@ async-timeout = {version = ">=4.0.2", markers = "python_full_version <= \"3.11.2
 hiredis = ["hiredis (>=1.0.0)"]
 ocsp = ["cryptography (>=36.0.1)", "pyopenssl (==20.0.1)", "requests (>=2.26.0)"]
 
+[[package]]
+name = "referencing"
+version = "0.34.0"
+description = "JSON Referencing + Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "referencing-0.34.0-py3-none-any.whl", hash = "sha256:d53ae300ceddd3169f1ffa9caf2cb7b769e92657e4fafb23d34b93679116dfd4"},
+    {file = "referencing-0.34.0.tar.gz", hash = "sha256:5773bd84ef41799a5a8ca72dc34590c041eb01bf9aa02632b4a973fb0181a844"},
+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+rpds-py = ">=0.7.0"
+
 [[package]]
 name = "requests"
 version = "2.27.1"
 description = "Python HTTP for Humans."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -1840,14 +1985,13 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<5)"]
 
 [[package]]
 name = "requests-oauthlib"
-version = "1.4.0"
+version = "2.0.0"
 description = "OAuthlib authentication support for Requests."
-category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.4"
 files = [
-    {file = "requests-oauthlib-1.4.0.tar.gz", hash = "sha256:acee623221e4a39abcbb919312c8ff04bd44e7e417087fb4bd5e2a2f53d5e79a"},
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+    {file = "requests-oauthlib-2.0.0.tar.gz", hash = "sha256:b3dffaebd884d8cd778494369603a9e7b58d29111bf6b41bdc2dcd87203af4e9"},
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 ]
 
 [package.dependencies]
@@ -1861,7 +2005,6 @@ rsa = ["oauthlib[signedtoken] (>=3.0.0)"]
 name = "rfc3986"
 version = "1.5.0"
 description = "Validating URI References per RFC 3986"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1872,11 +2015,118 @@ files = [
 [package.extras]
 idna2008 = ["idna"]
 
+[[package]]
+name = "rpds-py"
+version = "0.18.0"
+description = "Python bindings to Rust's persistent data structures (rpds)"
+optional = false
+python-versions = ">=3.8"
+files = [
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 name = "rsa"
 version = "4.9"
 description = "Pure-Python RSA implementation"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4"
 files = [
@@ -1891,7 +2141,6 @@ pyasn1 = ">=0.1.3"
 name = "s3transfer"
 version = "0.10.1"
 description = "An Amazon S3 Transfer Manager"
-category = "main"
 optional = false
 python-versions = ">= 3.8"
 files = [
@@ -1907,26 +2156,24 @@ crt = ["botocore[crt] (>=1.33.2,<2.0a.0)"]
 
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-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6,!=8.1.1)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -1938,7 +2185,6 @@ files = [
 name = "smmap"
 version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1950,7 +2196,6 @@ files = [
 name = "soupsieve"
 version = "2.5"
 description = "A modern CSS selector implementation for Beautiful Soup."
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1962,7 +2207,6 @@ files = [
 name = "strenum"
 version = "0.4.15"
 description = "An Enum that inherits from str."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1979,7 +2223,6 @@ test = ["pylint", "pytest", "pytest-black", "pytest-cov", "pytest-pylint"]
 name = "structlog"
 version = "19.2.0"
 description = "Structured Logging for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2000,7 +2243,6 @@ tests = ["coverage", "freezegun (>=0.2.8)", "pretend", "pytest (>=3.3.0)", "pyth
 name = "tibanna"
 version = "5.2.0"
 description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud."
-category = "main"
 optional = false
 python-versions = ">=3.8,<3.12"
 files = [
@@ -2017,14 +2259,13 @@ tomlkit = ">=0.11.0,<0.12.0"
 
 [[package]]
 name = "tibanna-ff"
-version = "3.3.2"
+version = "3.4.0"
 description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud."
-category = "main"
 optional = false
-python-versions = ">=3.8,<3.12"
+python-versions = "<3.12,>=3.8"
 files = [
-    {file = "tibanna_ff-3.3.2-py3-none-any.whl", hash = "sha256:e49bd07c73663a9368da798860568700ee79145eb11e9cd898eb4ce1407c012c"},
-    {file = "tibanna_ff-3.3.2.tar.gz", hash = "sha256:df54d077647640e658be530231aa46f83a6b0183bd6e34c098f9b9e774e550ed"},
+    {file = "tibanna_ff-3.4.0-py3-none-any.whl", hash = "sha256:a460fdb3325e47853a03b48a638b81be8881b92062040358bac29f06f0314cbd"},
+    {file = "tibanna_ff-3.4.0.tar.gz", hash = "sha256:0de476914a8bcfef36d2a0f0f7ce2edd805550e24329565f5b0d6238eec7319e"},
 ]
 
 [package.dependencies]
@@ -2040,7 +2281,6 @@ tomlkit = ">=0.11.0,<0.12.0"
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2052,7 +2292,6 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2064,7 +2303,6 @@ files = [
 name = "tomlkit"
 version = "0.11.8"
 description = "Style preserving TOML library"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2076,7 +2314,6 @@ files = [
 name = "tqdm"
 version = "4.66.2"
 description = "Fast, Extensible Progress Meter"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2093,23 +2330,35 @@ notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
 
+[[package]]
+name = "translationstring"
+version = "1.4"
+description = "Utility library for i18n relied on by various Repoze and Pyramid packages"
+optional = false
+python-versions = "*"
+files = [
+    {file = "translationstring-1.4-py2.py3-none-any.whl", hash = "sha256:5f4dc4d939573db851c8d840551e1a0fb27b946afe3b95aafc22577eed2d6262"},
+    {file = "translationstring-1.4.tar.gz", hash = "sha256:bf947538d76e69ba12ab17283b10355a9ecfbc078e6123443f43f2107f6376f3"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=1.3.1)", "docutils", "pylons-sphinx-themes"]
+
 [[package]]
 name = "typing-extensions"
-version = "4.10.0"
+version = "4.11.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"},
-    {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"},
+    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
+    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
 ]
 
 [[package]]
 name = "tzdata"
 version = "2024.1"
 description = "Provider of IANA time zone data"
-category = "main"
 optional = false
 python-versions = ">=2"
 files = [
@@ -2121,7 +2370,6 @@ files = [
 name = "tzlocal"
 version = "5.2"
 description = "tzinfo object for the local timezone"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2140,7 +2388,6 @@ devenv = ["check-manifest", "pytest (>=4.3)", "pytest-cov", "pytest-mock (>=3.3)
 name = "uritemplate"
 version = "3.0.1"
 description = "URI templates"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -2152,7 +2399,6 @@ files = [
 name = "urllib3"
 version = "1.26.18"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
@@ -2165,11 +2411,25 @@ brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotl
 secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
 socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
+[[package]]
+name = "venusian"
+version = "3.1.0"
+description = "A library for deferring decorator actions"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "venusian-3.1.0-py3-none-any.whl", hash = "sha256:d1fb1e49927f42573f6c9b7c4fcf61c892af8fdcaa2314daa01d9a560b23488d"},
+    {file = "venusian-3.1.0.tar.gz", hash = "sha256:eb72cdca6f3139a15dc80f9c95d3c10f8a54a0ba881eeef8e2ec5b42d3ee3a95"},
+]
+
+[package.extras]
+docs = ["Sphinx (>=4.3.2)", "pylons-sphinx-themes", "repoze.sphinx.autointerface", "sphinx-copybutton"]
+testing = ["coverage", "pytest", "pytest-cov"]
+
 [[package]]
 name = "waitress"
 version = "3.0.0"
 description = "Waitress WSGI server"
-category = "main"
 optional = false
 python-versions = ">=3.8.0"
 files = [
@@ -2185,7 +2445,6 @@ testing = ["coverage (>=5.0)", "pytest", "pytest-cov"]
 name = "wcwidth"
 version = "0.2.13"
 description = "Measures the displayed width of unicode strings in a terminal"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -2197,7 +2456,6 @@ files = [
 name = "webob"
 version = "1.8.7"
 description = "WSGI request and response object"
-category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*"
 files = [
@@ -2213,7 +2471,6 @@ testing = ["coverage", "pytest (>=3.1.0)", "pytest-cov", "pytest-xdist"]
 name = "websocket-client"
 version = "1.7.0"
 description = "WebSocket client for Python with low level API options"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2230,7 +2487,6 @@ test = ["websockets"]
 name = "webtest"
 version = "2.0.35"
 description = "Helper to test WSGI applications"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2252,7 +2508,6 @@ tests = ["PasteDeploy", "WSGIProxy2", "coverage", "mock", "nose (<1.3.0)", "pyqu
 name = "wheel"
 version = "0.43.0"
 description = "A built-package format for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -2263,7 +2518,93 @@ files = [
 [package.extras]
 test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
 
+[[package]]
+name = "zipp"
+version = "3.18.1"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+optional = false
+python-versions = ">=3.8"
+files = [
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+    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
+]
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+
+[[package]]
+name = "zope-deprecation"
+version = "5.0"
+description = "Zope Deprecation Infrastructure"
+optional = false
+python-versions = ">= 3.7"
+files = [
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+[package.dependencies]
+setuptools = "*"
+
+[package.extras]
+docs = ["Sphinx"]
+test = ["zope.testrunner"]
+
+[[package]]
+name = "zope-interface"
+version = "6.3"
+description = "Interfaces for Python"
+optional = false
+python-versions = ">=3.7"
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+    {file = "zope.interface-6.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4137025731e824eee8d263b20682b28a0bdc0508de9c11d6c6be54163e5b7c83"},
+    {file = "zope.interface-6.3-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:3c8731596198198746f7ce2a4487a0edcbc9ea5e5918f0ab23c4859bce56055c"},
+    {file = "zope.interface-6.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bf34840e102d1d0b2d39b1465918d90b312b1119552cebb61a242c42079817b9"},
+    {file = "zope.interface-6.3-cp39-cp39-win_amd64.whl", hash = "sha256:a1adc14a2a9d5e95f76df625a9b39f4709267a483962a572e3f3001ef90ea6e6"},
+    {file = "zope.interface-6.3.tar.gz", hash = "sha256:f83d6b4b22262d9a826c3bd4b2fbfafe1d0000f085ef8e44cd1328eea274ae6a"},
+]
+
+[package.dependencies]
+setuptools = "*"
+
+[package.extras]
+docs = ["Sphinx", "repoze.sphinx.autointerface", "sphinx-rtd-theme"]
+test = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
+testing = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
+
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<3.12"
-content-hash = "5666509fb6e119d715fe6b4ac09550706e354807c7dabd3edcbf78e565b0361a"
+content-hash = "94a07425c4079cc50f4af571c26d0041d9de6fe4179567e4fc3547a5ac9d8447"
diff --git a/pyproject.toml b/pyproject.toml
index 01956d2f..2a772988 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,7 +12,7 @@ packages = [
 python = ">=3.8,<3.12"
 cron-descriptor = "^1.4.0"
 click = "^7.1.2"
-dcicutils = "^8.0.0"
+dcicutils = "^8.8.4"
 PyJWT = "^2.5.0"
 Jinja2 = "^3.1.2"
 MarkupSafe = "^2.1.3"
@@ -27,7 +27,7 @@ pytz = "^2020.1"
 tibanna-ff = "^3.2.0"
 ## adding foursight-core
 # use below for deployment
-foursight-core = "^5.4.1"
+foursight-core = "^5.4.2"
 # use below for tests but not for deployment
 # foursight-core = { git = "https://github.com/4dn-dcic/foursight-core.git", branch="master" }
 # Need pytest-redis 3.0.2 or higher for pytest 7.4.2 (or higher).

From 251d2ba7d3ba7a5c18ddf7c567bb4580897c8e47 Mon Sep 17 00:00:00 2001
From: David Michaels <david_michaels@hms.harvard.edu>
Date: Tue, 23 Apr 2024 17:12:16 -0400
Subject: [PATCH 3/6] typo

---
 chalicelib_fourfront/checks/helpers/es_utils.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/chalicelib_fourfront/checks/helpers/es_utils.py b/chalicelib_fourfront/checks/helpers/es_utils.py
index 6ce730d9..8b825cd6 100644
--- a/chalicelib_fourfront/checks/helpers/es_utils.py
+++ b/chalicelib_fourfront/checks/helpers/es_utils.py
@@ -1,4 +1,5 @@
 import os
+from typing import Optional
 from dcicutils.es_utils import create_es_client
 from dcicutils import ff_utils
 

From 9aeabf8bbc347e8028abe0b5e690ad3d902cdab6 Mon Sep 17 00:00:00 2001
From: aschroed <andrew_schroeder@hms.harvard.edu>
Date: Wed, 24 Apr 2024 18:09:22 -0400
Subject: [PATCH 4/6] refactor status_mismatch check so it doesn't run as long

---
 chalicelib_fourfront/checks/audit_checks.py | 46 +++++++++++++++++++--
 1 file changed, 42 insertions(+), 4 deletions(-)

diff --git a/chalicelib_fourfront/checks/audit_checks.py b/chalicelib_fourfront/checks/audit_checks.py
index 715e7e47..7d58143a 100644
--- a/chalicelib_fourfront/checks/audit_checks.py
+++ b/chalicelib_fourfront/checks/audit_checks.py
@@ -573,14 +573,43 @@ def check_search_urls(connection, **kwargs):
     return check
 
 
-@check_function(id_list=None)
+def get_items_with_ignore_tags(key):
+    query = 'type=Item&tags=ignore_status_mismatch'
+    res = ff_utils.search_metadata(query, key=key)
+    return [item.get('uuid') for item in res]
+
+
+@check_function(id_list=None, last_mod_date=None)
 def check_status_mismatch(connection, **kwargs):
+    # embedded sub items should have an equal or greater level
+    # than that of the item in which they are embedded
     check = CheckResult(connection, 'check_status_mismatch')
     id_list = kwargs['id_list']
+    # if provided as a param will look for items modified more recently than
+    last_mod_date = kwargs['last_mod_date']
+
+    # limit the number of top level items to query (ExperimentSets) if id_list is not 
+    # provided - if a passing result cannot be found will do what?
+    if not (id_list or last_mod_date):
+        last_result = check.get_primary_result()
+        days = 0
+        while last_result['status'] != 'PASS' or not last_result['kwargs'].get('primary'):
+            days += 1
+            try:
+                last_result = check.get_closest_result(diff_hours=days*24)
+            except Exception:
+                pass
+            if days > 20:
+                # no passing primary check in the past 20 days so use date from 
+                # 'oldest' last_result
+                break
+        chk_uuid = last_result.get('uuid')
+        chk_uuid = chk_uuid.replace('T', ' ')
+        last_colon_idx = chk_uuid.rfind(':')
+        last_mod_date = chk_uuid[:last_colon_idx]
+
 
     MIN_CHUNK_SIZE = 200
-    # embedded sub items should have an equal or greater level
-    # than that of the item in which they are embedded
     id2links = {}
     id2status = {}
     id2item = {}
@@ -596,10 +625,19 @@ def check_status_mismatch(connection, **kwargs):
         itemids = re.split(',|\s+', id_list)
         itemids = [id for id in itemids if id]
     else:
+        if last_mod_date:
+            item_search += '&last_modified.date_modified.from={}'.format(last_mod_date)
         itemres = ff_utils.search_metadata(item_search, key=connection.ff_keys, page_limit=500)
         itemids = [item.get('uuid') for item in itemres]
+
+    tagged2ignore = []
+    checked_tags = False
     es_items = ff_utils.get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
+    import pdb; pdb.set_trace()
     for es_item in es_items:
+        if not checked_tags:
+            tagged2ignore = get_items_with_ignore_tags(connection.ff_keys)
+            checked_tags = True  # only do this once if at all
         label = es_item.get('embedded').get('display_title')
         desc = es_item.get('object').get('description')
         lab = es_item.get('embedded').get('lab').get('display_title')
@@ -608,7 +646,7 @@ def check_status_mismatch(connection, **kwargs):
         id2links[es_item.get('uuid')] = [li.get('uuid') for li in es_item.get('linked_uuids_embedded')]
         id2status[es_item.get('uuid')] = STATUS_LEVEL.get(status)
         id2item[es_item.get('uuid')] = {'label': label, 'status': status, 'lab': lab,
-                                        'description': desc, 'to_ignore': list(set(opfs))}
+                                        'description': desc, 'to_ignore': list(set(opfs)) + tagged2ignore}
 
     mismatches = {}
     linked2get = {}

From 7ab2723692b975b24de01f7e472d9c79c4b8e54c Mon Sep 17 00:00:00 2001
From: aschroed <andrew_schroeder@hms.harvard.edu>
Date: Wed, 24 Apr 2024 18:46:12 -0400
Subject: [PATCH 5/6] merge in David's get_es_metadata changes

---
 chalicelib_fourfront/checks/audit_checks.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/chalicelib_fourfront/checks/audit_checks.py b/chalicelib_fourfront/checks/audit_checks.py
index 170886ce..b7e81c3c 100644
--- a/chalicelib_fourfront/checks/audit_checks.py
+++ b/chalicelib_fourfront/checks/audit_checks.py
@@ -619,6 +619,7 @@ def check_status_mismatch(connection, **kwargs):
     stati2search = ['released', 'released_to_project']
     items2search = ['ExperimentSet']
     item_search = 'search/?frame=object'
+    import pdb; pdb.set_trace()
     for item in items2search:
         item_search += '&type={}'.format(item)
     for status in stati2search:
@@ -636,7 +637,7 @@ def check_status_mismatch(connection, **kwargs):
     tagged2ignore = []
     checked_tags = False
     es_items = get_es_metadata(itemids, key=connection.ff_keys, chunk_size=200, is_generator=True)
-    import pdb; pdb.set_trace()
+
     for es_item in es_items:
         if not checked_tags:
             tagged2ignore = get_items_with_ignore_tags(connection.ff_keys)

From 96884d0f2cfe99e86fb650c866b1066e725456b4 Mon Sep 17 00:00:00 2001
From: aschroed <andrew_schroeder@hms.harvard.edu>
Date: Thu, 25 Apr 2024 13:57:50 -0400
Subject: [PATCH 6/6] Added another kwarg to force run on all items; added
 additional query to get deleted but tagged items

---
 chalicelib_fourfront/checks/audit_checks.py | 19 ++++++++++++++-----
 1 file changed, 14 insertions(+), 5 deletions(-)

diff --git a/chalicelib_fourfront/checks/audit_checks.py b/chalicelib_fourfront/checks/audit_checks.py
index b7e81c3c..b0dd1916 100644
--- a/chalicelib_fourfront/checks/audit_checks.py
+++ b/chalicelib_fourfront/checks/audit_checks.py
@@ -576,24 +576,34 @@ def check_search_urls(connection, **kwargs):
     return check
 
 
+# value of the tag on items where mismatch status should be ignored
+TAG_TO_IGNORE = 'ignore_status_mismatch'
+
+
 def get_items_with_ignore_tags(key):
-    query = 'type=Item&tags=ignore_status_mismatch'
+    query = 'search/?type=Item&tags={}'.format(TAG_TO_IGNORE)
+    delquery = query + '&status=deleted&status=replaced&status=obsolete'
+
     res = ff_utils.search_metadata(query, key=key)
+    res.extend(ff_utils.search_metadata(delquery, key=key))
     return [item.get('uuid') for item in res]
 
 
-@check_function(id_list=None, last_mod_date=None)
+@check_function(id_list=None, last_mod_date=None, run_for_all=False)
 def check_status_mismatch(connection, **kwargs):
     # embedded sub items should have an equal or greater level
     # than that of the item in which they are embedded
     check = CheckResult(connection, 'check_status_mismatch')
+    # if true will run on all replicate sets
+    run_for_all = kwargs['run_for_all']
+    # if values will run only on these ids
     id_list = kwargs['id_list']
     # if provided as a param will look for items modified more recently than
     last_mod_date = kwargs['last_mod_date']
 
     # limit the number of top level items to query (ExperimentSets) if id_list is not 
     # provided - if a passing result cannot be found will do what?
-    if not (id_list or last_mod_date):
+    if not (run_for_all or id_list or last_mod_date):
         last_result = check.get_primary_result()
         days = 0
         while last_result['status'] != 'PASS' or not last_result['kwargs'].get('primary'):
@@ -603,7 +613,7 @@ def check_status_mismatch(connection, **kwargs):
             except Exception:
                 pass
             if days > 20:
-                # no passing primary check in the past 20 days so use date from 
+                # no passing primary check in the past 20 days so use date from
                 # 'oldest' last_result
                 break
         chk_uuid = last_result.get('uuid')
@@ -619,7 +629,6 @@ def check_status_mismatch(connection, **kwargs):
     stati2search = ['released', 'released_to_project']
     items2search = ['ExperimentSet']
     item_search = 'search/?frame=object'
-    import pdb; pdb.set_trace()
     for item in items2search:
         item_search += '&type={}'.format(item)
     for status in stati2search: