Error1

[alisi1989]

hi, I'm trying to install the software after cloning the repository, both in .zip format and with git clone. I have already installed Cython, numpy and pandas but I always get the same error:
CondaValueError: no package names supplied,
try "conda remove -h" for more details

(base) alessandrolisi1989@alisi-2 phasedibd % make
pip install cython --user
Requirement already satisfied: cython in /Users/alessandrolisi1989/.local/lib/python3.12/site-packages (3.0.10)
python setup.py build_ext --inplace
Compiling phasedibd/template_pbwt_analysis.pyx because it changed.
Compiling phasedibd/vcf_haplotype_alignment.pyx because it changed.
[1/2] Cythonizing phasedibd/template_pbwt_analysis.pyx
/Users/alessandrolisi1989/.local/lib/python3.12/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /Users/alessandrolisi1989/Desktop/Cameroon_Project_final/PhasedIBD/phasedibd/phasedibd/templated_pbwt_analysis.pxd
tree = Parsing.p_module(s, pxd, full_module_name)

Error compiling Cython file:

---

...
free(self.segments_end_cm)
free(self.segments_start_bp)
free(self.segments_end_bp)
cdef uint32_t num_cols
if self.current_matches_start != NULL:
num_cols = sizeof(self.current_matches_start)/sizeof(self.current_matches_start[0])
^

---

phasedibd/template_pbwt_analysis.pyx:93:57: Cannot assign type 'double' to 'uint32_t' (alias of 'unsigned int')

Error compiling Cython file:

---

...
cdef uint32_t num_rows
cdef uint32_t num_cols

first free any already allocated memory

if self.current_matches_start != NULL:
num_rows = sizeof(self.current_matches_start)/sizeof(self.current_matches_start[0])
^

---

phasedibd/template_pbwt_analysis.pyx:165:57: Cannot assign type 'double' to 'uint32_t' (alias of 'unsigned int')
Traceback (most recent call last):
File "/Users/alessandrolisi1989/Desktop/Cameroon_Project_final/PhasedIBD/phasedibd/setup.py", line 29, in
ext_modules=cythonize([Extension('phasedibd.', ['phasedibd/.pyx'], include_dirs=[np.get_include()])]),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/alessandrolisi1989/.local/lib/python3.12/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
cythonize_one(*args)
File "/Users/alessandrolisi1989/.local/lib/python3.12/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: phasedibd/template_pbwt_analysis.pyx
make: *** [all] Error 1