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setup.py
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setup.py
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import setuptools
setuptools.setup(
name="tbprofiler",
version="2.8.12",
packages=["tbprofiler","pathogenprofiler"],
license="MIT",
long_description="TBProfiler command line tool",
scripts= [
'tb-profiler',
'scripts/tbprofiler_performance.py',
'scripts/tbprofiler_variant_matrix.py',
'scripts/tbprofiler_library_summary.py',
'scripts/tbprofiler_get_mutation.py',
'scripts/tbprofiler_utils.py',
'scripts/tbprofiler_get_dr_freq.py',
'scripts/tbprofiler_get_library_freq.py',
'scripts/tbprofiler_get_heteroresistant_calls.py',
'scripts/tbprofiler_odds_ratios.py',
'scripts/tbprofiler_generate_haplotypes.py',
'scripts/tbprofiler_summarise_mutations.py',
'scripts/tbprofiler_generate_sequences.py',
'scripts/tbprofiler_rank_mutations.py',
'scripts/tbprofiler_analyse_variants.py',
'scripts/tbprofiler_mutation_stats.py',
'scripts/tbprofiler_gene_profiler.py'
],
data_files=[('share/tbprofiler',["db/tbdb.ann.txt","db/tbdb.barcode.bed","db/tbdb.bed","db/tbdb.dr.json","db/tbdb.fasta","db/tbdb.gff","db/tbdb.version.json","example_data/tbprofiler.test.fq.gz"])]
)